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Lag0006312 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006312
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:41071409..41071948
RNA-Seq ExpressionLag0006312
SyntenyLag0006312
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.3e-1630.65Show/hide
Query:  MWSAW--------NKARLQGADRPSGLVEWTKGYVLAFREAGRRSSEGGRETI-----------CRERIVWRAPRNGWYKVNFDASFLSHLSRVNLG-II
        +WS W        NK R++  D    L  W   Y+  F+      +   ++              +   +W     G +K+  DASF S      LG II
Subjt:  MWSAW--------NKARLQGADRPSGLVEWTKGYVLAFREAGRRSSEGGRETI-----------CRERIVWRAPRNGWYKVNFDASFLSHLSRVNLG-II

Query:  VRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
        +RD  GQV+ SAT   ++V  VD AE  AAV+ L +  + G+ P +LETDS R++ L  R++E + + G II        + LQV + F    GN   H
Subjt:  VRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]2.1e-2744.1Show/hide
Query:  LVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT
        LVEW   YV+ FREA       GR T   E ++W  P    YK+N DASFL+      LGII+R+  GQVM SAT   +N++ VDMAE   AV+ L+L +
Subjt:  LVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT

Query:  DMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
         +G+ P ILETDS R+F L ++  ED+ E G I+  A   +   L   F+F+  EGN+A H
Subjt:  DMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.9e-2034.76Show/hide
Query:  MWSAWNKARLQGADRPS--------GLVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSA
        +W  WN+   +  +  +         LVEW   Y + FREA + +   GR T   E I+W+ P  G YK+N DASFL+      LGII+ +  GQVM +A
Subjt:  MWSAWNKARLQGADRPS--------GLVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSA

Query:  TFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
        T   +N++ VDMAE  AAV+ L+L +++G+ P +                ED+ E G I+  A   +   L   F+F+  EGN+A H
Subjt:  TFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

XP_028115288.1 uncharacterized protein LOC114313136 isoform X3 [Camellia sinensis]7.1e-1535.17Show/hide
Query:  RRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRV
        RR+SE G          W AP NGW K+NFD +    L  V +G+++R+ LG+VM + +       D D AE YAA K++EL  D+GL    LE DS R+
Subjt:  RRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRV

Query:  FQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
         ++L  E E + E G I+   +    S  +     +  +GN   H
Subjt:  FQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

XP_028115297.1 uncharacterized protein LOC114313136 isoform X6 [Camellia sinensis]7.1e-1535.17Show/hide
Query:  RRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRV
        RR+SE G          W AP NGW K+NFD +    L  V +G+++R+ LG+VM + +       D D AE YAA K++EL  D+GL    LE DS R+
Subjt:  RRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRV

Query:  FQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
         ++L  E E + E G I+   +    S  +     +  +GN   H
Subjt:  FQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

TrEMBL top hitse value%identityAlignment
A0A6J1CDQ4 uncharacterized protein LOC1110105336.3e-1730.65Show/hide
Query:  MWSAW--------NKARLQGADRPSGLVEWTKGYVLAFREAGRRSSEGGRETI-----------CRERIVWRAPRNGWYKVNFDASFLSHLSRVNLG-II
        +WS W        NK R++  D    L  W   Y+  F+      +   ++              +   +W     G +K+  DASF S      LG II
Subjt:  MWSAW--------NKARLQGADRPSGLVEWTKGYVLAFREAGRRSSEGGRETI-----------CRERIVWRAPRNGWYKVNFDASFLSHLSRVNLG-II

Query:  VRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
        +RD  GQV+ SAT   ++V  VD AE  AAV+ L +  + G+ P +LETDS R++ L  R++E + + G II        + LQV + F    GN   H
Subjt:  VRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

A0A6J1CIF1 uncharacterized protein LOC1110112371.0e-2744.1Show/hide
Query:  LVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT
        LVEW   YV+ FREA       GR T   E ++W  P    YK+N DASFL+      LGII+R+  GQVM SAT   +N++ VDMAE   AV+ L+L +
Subjt:  LVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVT

Query:  DMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
         +G+ P ILETDS R+F L ++  ED+ E G I+  A   +   L   F+F+  EGN+A H
Subjt:  DMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

A0A6J1DAR4 uncharacterized protein LOC1110189549.3e-2134.76Show/hide
Query:  MWSAWNKARLQGADRPS--------GLVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSA
        +W  WN+   +  +  +         LVEW   Y + FREA + +   GR T   E I+W+ P  G YK+N DASFL+      LGII+ +  GQVM +A
Subjt:  MWSAWNKARLQGADRPS--------GLVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSA

Query:  TFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
        T   +N++ VDMAE  AAV+ L+L +++G+ P +                ED+ E G I+  A   +   L   F+F+  EGN+A H
Subjt:  TFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

A0A6J1DBJ7 uncharacterized protein LOC1110189733.4e-1531.91Show/hide
Query:  MWSAWNKARLQGADR------PSGLVEWTKGYVLAFREAGRRSSEGGRETICR--ERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSA
        +W+ WN AR Q           S LV W++ Y+  ++ A R  S      +CR     +WR P     KVN DA+F        +G+I+RD  G V L+A
Subjt:  MWSAWNKARLQGADR------PSGLVEWTKGYVLAFREAGRRSSEGGRETICR--ERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSA

Query:  TFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQ-VLFDFIHHEGNQATH
                DVD  EG+A  + + L  + G     +ETDS R+F LL  +  D  E+G++ +   +   S  + V F F H  GN   H
Subjt:  TFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQ-VLFDFIHHEGNQATH

A0A7J7GYW5 Uncharacterized protein5.9e-1535.17Show/hide
Query:  RRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRV
        RR+SE G          W AP NGW K+NFD +    L  V +G+++R+ LG+VM + +       D D AE YAA K++EL  D+G     LE DS R+
Subjt:  RRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAAVKSLELVTDMGLGPTILETDSCRV

Query:  FQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH
         + L  E E + E G I+   + A  S  +     +  +GN   H
Subjt:  FQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCGGCCTGGAATAAAGCTCGTCTTCAAGGGGCTGATAGGCCGAGTGGGCTAGTGGAATGGACTAAGGGGTATGTACTGGCTTTTCGTGAGGCTGGGAGGAGAAG
TAGTGAAGGGGGTCGAGAGACGATTTGTCGTGAGAGGATAGTGTGGCGGGCCCCGAGGAATGGCTGGTATAAGGTGAATTTTGATGCCTCTTTCCTGTCTCATTTATCCA
GGGTCAACCTAGGGATAATTGTGCGAGATCCTTTGGGCCAAGTGATGCTTTCGGCGACCTTCACTAAGGACAATGTGAGAGATGTCGACATGGCTGAAGGATATGCAGCC
GTGAAAAGTCTGGAGTTGGTGACAGATATGGGTTTGGGCCCAACCATTCTTGAGACGGACTCGTGTAGAGTTTTCCAACTTCTCAATCGAGAGCGTGAAGATGTCTTCGA
GCTGGGTATGATTATTGCAAATGCACTGATGGCTTTTCCTTCTGATTTGCAGGTACTGTTTGATTTCATTCACCATGAAGGGAACCAGGCGACGCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCGGCCTGGAATAAAGCTCGTCTTCAAGGGGCTGATAGGCCGAGTGGGCTAGTGGAATGGACTAAGGGGTATGTACTGGCTTTTCGTGAGGCTGGGAGGAGAAG
TAGTGAAGGGGGTCGAGAGACGATTTGTCGTGAGAGGATAGTGTGGCGGGCCCCGAGGAATGGCTGGTATAAGGTGAATTTTGATGCCTCTTTCCTGTCTCATTTATCCA
GGGTCAACCTAGGGATAATTGTGCGAGATCCTTTGGGCCAAGTGATGCTTTCGGCGACCTTCACTAAGGACAATGTGAGAGATGTCGACATGGCTGAAGGATATGCAGCC
GTGAAAAGTCTGGAGTTGGTGACAGATATGGGTTTGGGCCCAACCATTCTTGAGACGGACTCGTGTAGAGTTTTCCAACTTCTCAATCGAGAGCGTGAAGATGTCTTCGA
GCTGGGTATGATTATTGCAAATGCACTGATGGCTTTTCCTTCTGATTTGCAGGTACTGTTTGATTTCATTCACCATGAAGGGAACCAGGCGACGCACTGA
Protein sequenceShow/hide protein sequence
MWSAWNKARLQGADRPSGLVEWTKGYVLAFREAGRRSSEGGRETICRERIVWRAPRNGWYKVNFDASFLSHLSRVNLGIIVRDPLGQVMLSATFTKDNVRDVDMAEGYAA
VKSLELVTDMGLGPTILETDSCRVFQLLNREREDVFELGMIIANALMAFPSDLQVLFDFIHHEGNQATH