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Lag0006319 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006319
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionsquamosa promoter-binding-like protein 13A
Genome locationchr6:41225256..41225891
RNA-Seq ExpressionLag0006319
SyntenyLag0006319
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042930.1 squamosa promoter-binding-like protein 13A [Cucumis melo var. makuwa]6.0e-2595.08Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLFMSSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

KAG7022658.1 Squamosa promoter-binding-like protein 13B, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2493.44Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLF+SSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

XP_008450118.1 PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo]6.0e-2595.08Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLFMSSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

XP_022928509.1 squamosa promoter-binding-like protein 13A [Cucurbita moschata]1.8e-2493.44Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLF+SSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

XP_022989683.1 squamosa promoter-binding-like protein 13A [Cucurbita maxima]1.8e-2493.44Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLF+SSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

TrEMBL top hitse value%identityAlignment
A0A1S3BNK6 squamosa promoter-binding-like protein 13A2.9e-2595.08Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLFMSSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

A0A5D3C4M7 Squamosa promoter-binding-like protein 13A2.9e-2595.08Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLFMSSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

A0A6J1EL17 squamosa promoter-binding-like protein 13A8.5e-2593.44Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLF+SSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

A0A6J1J818 squamosa promoter-binding-like protein 13A1.1e-2493.44Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFH LGEFDEVK SCRKRL+GHNRRRRKPQPESLFMSSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

A0A6J1JR21 squamosa promoter-binding-like protein 13A8.5e-2593.44Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        MV GEEKRFCQQCSRFHSLGEFDEVK SCRKRL+GHNRRRRKPQPESLF+SSRDFLSNCKG
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

SwissProt top hitse value%identityAlignment
Q0J0K1 Squamosa promoter-binding-like protein 182.4e-1668.85Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        +V G E RFCQQCSRFH LGEFDE K SCRKRL+GHNRRRRKPQ +S  MSS  F+++ +G
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

Q0JGI1 Squamosa promoter-binding-like protein 24.5e-1576.6Show/hide
Query:  VWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL
        V G+++RFCQQCSRFH LGEFDE K SCRKRL+GHN+RRRKPQP+ L
Subjt:  VWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL

Q49I55 Teosinte glume architecture 15.9e-1563.93Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        +V G E RFCQQCSRFH L EFD  K SCRKRL+GHNRRRRKPQP++  M+S  F+++ +G
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

Q49I57 Teosinte glume architecture 15.9e-1563.93Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        +V G E RFCQQCSRFH L EFD  K SCRKRL+GHNRRRRKPQP++  M+S  F+++ +G
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

Q6YZE8 Squamosa promoter-binding-like protein 162.0e-1565.57Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG
        +V G E RFCQQCSRFH L EFDE K SCRKRL+GHNRRRRKPQP+   M+S  +L++ +G
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKG

Arabidopsis top hitse value%identityAlignment
AT1G76580.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein3.0e-1454.41Show/hide
Query:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL-----FMSSRDFLSNCKGME
        +V  + +RFCQQCSRFH L EFDE K SCR+RL+GHNRRRRK QP+++      + +RD  SN   M+
Subjt:  MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL-----FMSSRDFLSNCKGME

AT2G42200.1 squamosa promoter binding protein-like 91.1e-1374.47Show/hide
Query:  VWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL
        V G E+RFCQQCSRFH L EFD  K SCR+RL GHN RRRKPQP SL
Subjt:  VWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL

AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.6e-1577.78Show/hide
Query:  GEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL
        G ++RFCQQCSRFH+L EFDE K SCRKRL+GHNRRRRKPQPE +
Subjt:  GEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL

AT5G50570.2 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.6e-1577.78Show/hide
Query:  GEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL
        G ++RFCQQCSRFH+L EFDE K SCRKRL+GHNRRRRKPQPE +
Subjt:  GEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL

AT5G50670.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.6e-1577.78Show/hide
Query:  GEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL
        G ++RFCQQCSRFH+L EFDE K SCRKRL+GHNRRRRKPQPE +
Subjt:  GEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGGGGCGAGGAGAAGCGATTCTGTCAACAGTGCAGCAGGTTCCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGTAGCTGTAGAAAGAGGCTTAATGGGCACAA
TCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTCTCAAATTGCAAAGGTATGGAGCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGGGGCGAGGAGAAGCGATTCTGTCAACAGTGCAGCAGGTTCCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGTAGCTGTAGAAAGAGGCTTAATGGGCACAA
TCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTCTCAAATTGCAAAGGTATGGAGCACTAA
Protein sequenceShow/hide protein sequence
MVWGEEKRFCQQCSRFHSLGEFDEVKSSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCKGMEH