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Lag0006389 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006389
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:41948512..41949467
RNA-Seq ExpressionLag0006389
SyntenyLag0006389
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]3.3e-1535.77Show/hide
Query:  LGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLR---ED
        +G  IGE ++V+ DED +   + LRVK+K+NI +PL RG+ +++  +  ++W    YE LP FCY+CG I HV ++C + + +K+ + Q+G WLR   E 
Subjt:  LGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLR---ED

Query:  PLFSPKQKGSREGEKQEGGSQLV
             + + S  G    GG +++
Subjt:  PLFSPKQKGSREGEKQEGGSQLV

KAF0892003.1 hypothetical protein E2562_012483 [Oryza meyeriana var. granulata]9.6e-1533.53Show/hide
Query:  DNIDQQLSKLKLTEKEKGKKAKIEDEELEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKIN
        ++++  + ++KL   E+     +  EE+++     ++  + K+LS K   P+       ++ N      LG  IGEF +VD+D++     R LRVK++I+
Subjt:  DNIDQQLSKLKLTEKEKGKKAKIEDEELEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKIN

Query:  IHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDP
        I +PL  G T+ VG   E+ W  + YE LP+FCY CG IGH  K C  +   + Y  QYG  LR  P
Subjt:  IHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDP

KAG2663507.1 hypothetical protein I3760_16G033000 [Carya illinoinensis]4.3e-1541.8Show/hide
Query:  LGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEV-GSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDPL
        LG+ IGE E+V++DED     RSLRVKI +++ +PLARG T+ + G KV   WS V YE++P FC++CGRI H    C   + +K+  +Q+GSWLR +  
Subjt:  LGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEV-GSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDPL

Query:  FSPKQKGSREGEKQEGGSQLVG
           + +  +E    +G S   G
Subjt:  FSPKQKGSREGEKQEGGSQLVG

XP_021303063.1 uncharacterized protein LOC8083790 [Sorghum bicolor]5.6e-1541.73Show/hide
Query:  PDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEE
        P GF+T           R LGN IG+F KVDLD+ +      LR+++K+++ +PL R   + +G    E + RV YE+LP FC  CG +GHV  +C D  
Subjt:  PDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEE

Query:  AEKNYELQYGSWLREDPLFSPKQKGSR
         EK  ELQYG WL   P    K K SR
Subjt:  AEKNYELQYGSWLREDPLFSPKQKGSR

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.6e-1436.09Show/hide
Query:  IWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDE----EAEKNYE
        + N K   ++GN +G+F  +D ++      R++R+++ +++ +PL RG  L + S  E  W    YERLP +CY CGR+GH  ++CDD+    +  +   
Subjt:  IWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDE----EAEKNYE

Query:  LQYGSWLREDPLFSPKQKGSREG---EKQEGGS
        LQYG+WLR D +   K KGSR     +K  GG+
Subjt:  LQYGSWLREDPLFSPKQKGSREG---EKQEGGS

TrEMBL top hitse value%identityAlignment
A0A1Q3BJG7 DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein6.7e-1436.11Show/hide
Query:  KWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDC----DDEEAEKNYELQYG
        K  +++GN IGE E +++    R+  + +RV++ I+  QPL RG    +G+  +  W    YE+LP FC++CG +GH++ DC      +E  K  + QYG
Subjt:  KWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDC----DDEEAEKNYELQYG

Query:  SWLREDPL
         WLR + L
Subjt:  SWLREDPL

A0A5C7IV40 CCHC-type domain-containing protein3.9e-1428.88Show/hide
Query:  MEEDNIDQQLSKLKLTEKEKGKKAKIEDEELEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWN----------------------------------
        M  D++ +    L L EKE G    ++    E+ ++ L    V KI++ K ++ D F   IPK W                                   
Subjt:  MEEDNIDQQLSKLKLTEKEKGKKAKIEDEELEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWN----------------------------------

Query:  ------LKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDC---DDEEAEKN
              ++W   LGN+IGE  ++D D       + +RV++ IN+ QPL R   ++V    +ET   + YERL + C+ CGR+ HVI+DC    D++  +N
Subjt:  ------LKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDC---DDEEAEKN

Query:  YELQYGSWLREDPLFSPKQKGSREGEKQEGGS
        Y L Y SWLR     +   K  +  +K+EG S
Subjt:  YELQYGSWLREDPLFSPKQKGSREGEKQEGGS

A0A6G1BXB4 zf-CCHC_4 domain-containing protein4.6e-1533.53Show/hide
Query:  DNIDQQLSKLKLTEKEKGKKAKIEDEELEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKIN
        ++++  + ++KL   E+     +  EE+++     ++  + K+LS K   P+       ++ N      LG  IGEF +VD+D++     R LRVK++I+
Subjt:  DNIDQQLSKLKLTEKEKGKKAKIEDEELEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKIN

Query:  IHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDP
        I +PL  G T+ VG   E+ W  + YE LP+FCY CG IGH  K C  +   + Y  QYG  LR  P
Subjt:  IHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDP

A0A803P119 Uncharacterized protein1.0e-1437.74Show/hide
Query:  ARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDC----DDEEAEKNYELQYGSW
        A ++G+I+GEF KVD D         +R++I +++ QPL RG  L++   V++ W  + YE+LP+ CY CGR+GH    C    + E+   +  L YG W
Subjt:  ARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDC----DDEEAEKNYELQYGSW

Query:  LREDPL
        ++ DPL
Subjt:  LREDPL

B8AYU1 zf-CCHC_4 domain-containing protein1.8e-1438.3Show/hide
Query:  LEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYE
        LEE D   +   V K+ S +     G       + N+   R++GN IG+  +VD DED       LRVK+ ++  + L RG  +E  +  +E W  V YE
Subjt:  LEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLARGATLEVGSKVEETWSRVTYE

Query:  RLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDPL
         LP FCYSCG +GHV ++CDD +  K  E Q+G WLR  P+
Subjt:  RLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGACAACATTGATCAGCAGTTGAGCAAGTTAAAGCTTACAGAAAAAGAAAAAGGGAAAAAGGCCAAAATCGAGGATGAGGAGTTGGAAGAATCAGACAAAAA
TCTGTTAAACTCCACTGTTTGCAAGATTCTATCCATGAAAACGATAAGCCCAGATGGTTTCAAAACTACGATTCCAAAGATCTGGAACCTGAAATGGGCAAGAGTGTTGG
GTAACATCATTGGAGAGTTTGAGAAAGTTGACCTGGATGAAGACAGTAGGAAGGAGGAGAGATCTTTGAGGGTCAAGATCAAAATCAACATTCACCAGCCGCTAGCAAGA
GGAGCAACACTCGAAGTTGGCTCAAAAGTTGAAGAAACATGGAGTAGGGTGACGTATGAGAGATTACCAGAATTCTGTTATAGCTGTGGGAGAATAGGCCACGTTATTAA
AGACTGCGATGATGAAGAAGCTGAGAAAAATTATGAACTCCAGTATGGTTCTTGGTTGAGAGAGGACCCTCTCTTCTCTCCCAAGCAAAAAGGATCAAGAGAAGGGGAAA
AGCAAGAAGGAGGCAGCCAGCTGGTGGGTGCGAGAAAGGAAAGAAATCCTAAGAAAAACGAAGAGCCGGAAGGCGAGGAAGAAGAAGAGCAAGTCGGGAATGAGATGTCT
ACGGCGGTGCGGCAAGCGACGGAGCTGCGGTCGGAGGGCGCTGCTGAAGTTGAAAAAGAGCCGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGACAACATTGATCAGCAGTTGAGCAAGTTAAAGCTTACAGAAAAAGAAAAAGGGAAAAAGGCCAAAATCGAGGATGAGGAGTTGGAAGAATCAGACAAAAA
TCTGTTAAACTCCACTGTTTGCAAGATTCTATCCATGAAAACGATAAGCCCAGATGGTTTCAAAACTACGATTCCAAAGATCTGGAACCTGAAATGGGCAAGAGTGTTGG
GTAACATCATTGGAGAGTTTGAGAAAGTTGACCTGGATGAAGACAGTAGGAAGGAGGAGAGATCTTTGAGGGTCAAGATCAAAATCAACATTCACCAGCCGCTAGCAAGA
GGAGCAACACTCGAAGTTGGCTCAAAAGTTGAAGAAACATGGAGTAGGGTGACGTATGAGAGATTACCAGAATTCTGTTATAGCTGTGGGAGAATAGGCCACGTTATTAA
AGACTGCGATGATGAAGAAGCTGAGAAAAATTATGAACTCCAGTATGGTTCTTGGTTGAGAGAGGACCCTCTCTTCTCTCCCAAGCAAAAAGGATCAAGAGAAGGGGAAA
AGCAAGAAGGAGGCAGCCAGCTGGTGGGTGCGAGAAAGGAAAGAAATCCTAAGAAAAACGAAGAGCCGGAAGGCGAGGAAGAAGAAGAGCAAGTCGGGAATGAGATGTCT
ACGGCGGTGCGGCAAGCGACGGAGCTGCGGTCGGAGGGCGCTGCTGAAGTTGAAAAAGAGCCGTTGTAG
Protein sequenceShow/hide protein sequence
MEEDNIDQQLSKLKLTEKEKGKKAKIEDEELEESDKNLLNSTVCKILSMKTISPDGFKTTIPKIWNLKWARVLGNIIGEFEKVDLDEDSRKEERSLRVKIKINIHQPLAR
GATLEVGSKVEETWSRVTYERLPEFCYSCGRIGHVIKDCDDEEAEKNYELQYGSWLREDPLFSPKQKGSREGEKQEGGSQLVGARKERNPKKNEEPEGEEEEEQVGNEMS
TAVRQATELRSEGAAEVEKEPL