; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006406 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006406
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:42128659..42129555
RNA-Seq ExpressionLag0006406
SyntenyLag0006406
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]4.3e-2534.06Show/hide
Query:  VDWGDFEEMVVLMWALWNRRNGEIF---QGKTLVSDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQV-WWSAPVGLRNKVNIDASFLSSSMQGSVGIVI
        + W   EE+ V +WA+WN RN  +F    G  LV+ V  W+AD++Q +++ +     P  +     +V  W  P+    KVN+DA+F   +    + I+I
Subjt:  VDWGDFEEMVVLMWALWNRRNGEIF---QGKTLVSDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQV-WWSAPVGLRNKVNIDASFLSSSMQGSVGIVI

Query:  RDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSK-SLESSVCFTLRERNLVAHN
        RDS   V+ SA  F +  +   LAE LA +EG  LA E GL+P Q+E DS +V+ +L  + ED SE+G      R+  S   +     F  RE N  AH 
Subjt:  RDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSK-SLESSVCFTLRERNLVAHN

Query:  LALYARSRGSNEEWMEDWPAFVSSYVQAE
        LA       S   W+E+W + +S  + A+
Subjt:  LALYARSRGSNEEWMEDWPAFVSSYVQAE

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]4.3e-2533.48Show/hide
Query:  QSVVDWGDFEEMVVLMWALWNRRNGEIFQGKTLV-SDVGSWLADFIQNFRAVRSKSHPPRSVPLVRS-------------QVWWSAPVGLRNKVNIDASF
        + +++W DFEE+VV +W+LWNRRN  +F  + +   D+  W++ +I  F+A  + +H   +  + +S              +W  A  G+  K+  DASF
Subjt:  QSVVDWGDFEEMVVLMWALWNRRNGEIFQGKTLV-SDVGSWLADFIQNFRAVRSKSHPPRSVPLVRS-------------QVWWSAPVGLRNKVNIDASF

Query:  LSSSMQGSVG-IVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSV
         S      +G I+IRD  G+V+ SA ++     S D AE LA  EG R+A E G+ P+ LE DS R+Y + + + E +S+ GS ++  +   +  L+ S 
Subjt:  LSSSMQGSVG-IVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSV

Query:  CFTLRERNLVAHNLALYARSRGSN
         FT R  N +AH LA  A     N
Subjt:  CFTLRERNLVAHNLALYARSRGSN

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.6e-2737.5Show/hide
Query:  WLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELG
        W   ++  FR   S   P R      ++V W  P     K+N DASFL+S     +GI+IR+  G+VM SA ++     S D+AE +   EG +LA ++G
Subjt:  WLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELG

Query:  LLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLED
        + P+ LE DS R++ + S   ED+SE G  + + +NF+++SL +S  F  RE N  AH LA  A        WMEDWP  + S ++ ECLE+
Subjt:  LLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLED

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]2.1e-4034.01Show/hide
Query:  NLIHRGVDIPNFCPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNGEIFQGKT-----LV
        NL  RGV+I N C  C    ED +H  W+CKFA+ +WI+S+FG           F ++      +   DFEE+ V++W LWN+RN   F   T     + 
Subjt:  NLIHRGVDIPNFCPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNGEIFQGKT-----LV

Query:  SDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRL
         ++  W   +   FR   +KS+P        +++ W  P     K+N DASFL+S     +GI+I +  G+VM +A ++     S D+AE +A  EG +L
Subjt:  SDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRL

Query:  ARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLED
        A E+G+ P                 +ED+SE G  + + +NF+++SL +S  F  RE N  AH LA  A        WMEDWP  + S ++ ECLE+
Subjt:  ARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLED

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.6e-2734.5Show/hide
Query:  VVDWGDFEEMVVLMWALWNRRN--GEIFQGKTLVSDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIR
        +V W     +VVL+WA+WN RN   + F     +SD+ SW  +++Q ++A +  S     V        W  P     KVN+DA+F   S    VG++IR
Subjt:  VVDWGDFEEMVVLMWALWNRRN--GEIFQGKTLVSDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIR

Query:  DSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLES-SVCFTLRERNLVAHNL
        DS G V  +A R  +  +  D  EG A  EG  LA E G +  Q+E DS R++ +L+ +  D SE+G      + F S   E  S  FT R  N  AH L
Subjt:  DSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLES-SVCFTLRERNLVAHNL

Query:  ALYARSRGSNEEWMEDWPAFVSSYVQAEC
        A  A +    + W+E+WP  +SS +  +C
Subjt:  ALYARSRGSNEEWMEDWPAFVSSYVQAEC

TrEMBL top hitse value%identityAlignment
A0A2N9EZZ2 Uncharacterized protein9.1e-2930.25Show/hide
Query:  MNLIHRGVDIPNFCPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNG-EIFQGKTLVSDV
        +NL  R + + + C +C   +ED +H +W CK  Q   +   F S    DF+    DL+  +  V    D E  +V+ WALW RRN   I Q    ++ V
Subjt:  MNLIHRGVDIPNFCPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNG-EIFQGKTLVSDV

Query:  GSWLADFIQNFRAVRSKSHP-PRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLAR
        GS    +++ +      S+P P++ P  R    W  P  LR K+N D +    + +  +G+++RDS G VM S  +      S    E  A K   + A 
Subjt:  GSWLADFIQNFRAVRSKSHP-PRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLAR

Query:  ELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWP
        E+G+   + E DS+ +   L+ +   ++  G  L + +   SK    S     RE N +AH LA  A S  S E WME  P
Subjt:  ELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWP

A0A2N9I239 RNase H domain-containing protein7.2e-2629.75Show/hide
Query:  CPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNGEIFQGK-TLVSDVGSWLADFIQNFRA
        C  C + DED++H +W C     +W   +      R     + D+V +L          E   ++W +W RRN  ++Q + T + D+       ++ + A
Subjt:  CPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNGEIFQGK-TLVSDVGSWLADFIQNFRA

Query:  VRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSK
        V  +  P   VP V  +  W  P  L  K N DA+   +    SVG+VIRD  G  + + C+ F    + D AE LA +E  +LAR++GL+ +++E DS 
Subjt:  VRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSK

Query:  RVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRER-NLVAHNLALYARSRGSN-EEWMEDWPAFVSSYVQAE
         ++  L  + E  +  G  +Q D +  + SL+  V   +R   N VAH LA  A    S+   W+ED P F++  +Q+E
Subjt:  RVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRER-NLVAHNLALYARSRGSN-EEWMEDWPAFVSSYVQAE

A0A6J1CIF1 uncharacterized protein LOC1110112377.7e-2837.5Show/hide
Query:  WLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELG
        W   ++  FR   S   P R      ++V W  P     K+N DASFL+S     +GI+IR+  G+VM SA ++     S D+AE +   EG +LA ++G
Subjt:  WLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELG

Query:  LLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLED
        + P+ LE DS R++ + S   ED+SE G  + + +NF+++SL +S  F  RE N  AH LA  A        WMEDWP  + S ++ ECLE+
Subjt:  LLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLED

A0A6J1DAR4 uncharacterized protein LOC1110189541.0e-4034.01Show/hide
Query:  NLIHRGVDIPNFCPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNGEIFQGKT-----LV
        NL  RGV+I N C  C    ED +H  W+CKFA+ +WI+S+FG           F ++      +   DFEE+ V++W LWN+RN   F   T     + 
Subjt:  NLIHRGVDIPNFCPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNGEIFQGKT-----LV

Query:  SDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRL
         ++  W   +   FR   +KS+P        +++ W  P     K+N DASFL+S     +GI+I +  G+VM +A ++     S D+AE +A  EG +L
Subjt:  SDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRL

Query:  ARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLED
        A E+G+ P                 +ED+SE G  + + +NF+++SL +S  F  RE N  AH LA  A        WMEDWP  + S ++ ECLE+
Subjt:  ARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLED

A0A6J1DBJ7 uncharacterized protein LOC1110189737.7e-2834.5Show/hide
Query:  VVDWGDFEEMVVLMWALWNRRN--GEIFQGKTLVSDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIR
        +V W     +VVL+WA+WN RN   + F     +SD+ SW  +++Q ++A +  S     V        W  P     KVN+DA+F   S    VG++IR
Subjt:  VVDWGDFEEMVVLMWALWNRRN--GEIFQGKTLVSDVGSWLADFIQNFRAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIR

Query:  DSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLES-SVCFTLRERNLVAHNL
        DS G V  +A R  +  +  D  EG A  EG  LA E G +  Q+E DS R++ +L+ +  D SE+G      + F S   E  S  FT R  N  AH L
Subjt:  DSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSGEVEDISELGSFLQEDRNFFSKSLES-SVCFTLRERNLVAHNL

Query:  ALYARSRGSNEEWMEDWPAFVSSYVQAEC
        A  A +    + W+E+WP  +SS +  +C
Subjt:  ALYARSRGSNEEWMEDWPAFVSSYVQAEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTGATCCACCGTGGAGTTGATATCCCAAATTTTTGCCCTCTATGTTACAGCTGCGATGAGGACGTGCTCCACTTTGTCTGGCTCTGCAAGTTTGCTCAAAGGGT
GTGGATTAGCTCGAGATTTGGATCTTGTTACCGCCGGGATTTTTCTGGGCATATTTTCGATTTGGTCTGCTATTTACAGTCGGTGGTTGATTGGGGTGATTTTGAAGAAA
TGGTTGTTCTGATGTGGGCTCTGTGGAATCGGCGCAACGGTGAAATTTTTCAGGGGAAGACGTTGGTGTCTGATGTGGGTTCTTGGTTAGCGGATTTTATCCAGAATTTC
AGAGCTGTGCGGTCCAAGAGCCATCCTCCCCGGTCGGTTCCCCTGGTTCGGTCGCAAGTGTGGTGGTCAGCGCCCGTGGGTCTGCGTAACAAAGTGAATATTGATGCCTC
TTTCTTGAGTTCTTCAATGCAAGGAAGCGTGGGTATTGTTATTAGGGATTCAGTGGGTCGTGTTATGTTCTCAGCTTGCCGTTTCTTTTCGCTGTGCACCTCCCCAGACT
TGGCCGAGGGTCTTGCAACTAAAGAAGGTTGTCGTTTGGCTCGAGAGCTTGGGCTTCTTCCTATGCAACTTGAGGTGGATTCCAAGAGGGTCTACCAGATTCTTAGTGGG
GAGGTTGAGGACATCTCTGAATTGGGTTCATTCCTCCAGGAGGATCGGAATTTCTTCTCTAAGTCGCTCGAGAGTTCGGTTTGCTTCACCCTGAGGGAAAGGAATCTTGT
AGCCCACAATCTTGCATTATATGCTCGGTCGAGGGGAAGCAATGAAGAGTGGATGGAAGATTGGCCTGCTTTCGTTTCTTCTTATGTTCAAGCTGAATGCCTAGAAGATT
GCTCCTTTTCTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTTGATCCACCGTGGAGTTGATATCCCAAATTTTTGCCCTCTATGTTACAGCTGCGATGAGGACGTGCTCCACTTTGTCTGGCTCTGCAAGTTTGCTCAAAGGGT
GTGGATTAGCTCGAGATTTGGATCTTGTTACCGCCGGGATTTTTCTGGGCATATTTTCGATTTGGTCTGCTATTTACAGTCGGTGGTTGATTGGGGTGATTTTGAAGAAA
TGGTTGTTCTGATGTGGGCTCTGTGGAATCGGCGCAACGGTGAAATTTTTCAGGGGAAGACGTTGGTGTCTGATGTGGGTTCTTGGTTAGCGGATTTTATCCAGAATTTC
AGAGCTGTGCGGTCCAAGAGCCATCCTCCCCGGTCGGTTCCCCTGGTTCGGTCGCAAGTGTGGTGGTCAGCGCCCGTGGGTCTGCGTAACAAAGTGAATATTGATGCCTC
TTTCTTGAGTTCTTCAATGCAAGGAAGCGTGGGTATTGTTATTAGGGATTCAGTGGGTCGTGTTATGTTCTCAGCTTGCCGTTTCTTTTCGCTGTGCACCTCCCCAGACT
TGGCCGAGGGTCTTGCAACTAAAGAAGGTTGTCGTTTGGCTCGAGAGCTTGGGCTTCTTCCTATGCAACTTGAGGTGGATTCCAAGAGGGTCTACCAGATTCTTAGTGGG
GAGGTTGAGGACATCTCTGAATTGGGTTCATTCCTCCAGGAGGATCGGAATTTCTTCTCTAAGTCGCTCGAGAGTTCGGTTTGCTTCACCCTGAGGGAAAGGAATCTTGT
AGCCCACAATCTTGCATTATATGCTCGGTCGAGGGGAAGCAATGAAGAGTGGATGGAAGATTGGCCTGCTTTCGTTTCTTCTTATGTTCAAGCTGAATGCCTAGAAGATT
GCTCCTTTTCTTTGTAG
Protein sequenceShow/hide protein sequence
MNLIHRGVDIPNFCPLCYSCDEDVLHFVWLCKFAQRVWISSRFGSCYRRDFSGHIFDLVCYLQSVVDWGDFEEMVVLMWALWNRRNGEIFQGKTLVSDVGSWLADFIQNF
RAVRSKSHPPRSVPLVRSQVWWSAPVGLRNKVNIDASFLSSSMQGSVGIVIRDSVGRVMFSACRFFSLCTSPDLAEGLATKEGCRLARELGLLPMQLEVDSKRVYQILSG
EVEDISELGSFLQEDRNFFSKSLESSVCFTLRERNLVAHNLALYARSRGSNEEWMEDWPAFVSSYVQAECLEDCSFSL