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Lag0006429 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006429
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGeranylgeranyl pyrophosphate synthase 4
Genome locationchr6:42395500..42397414
RNA-Seq ExpressionLag0006429
SyntenyLag0006429
Gene Ontology termsGO:0008299 - isoprenoid biosynthetic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021976342.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Helianthus annuus]2.9e-0778.38Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V+YPA+IYE+MRYSVLAEGAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
XP_021988672.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic isoform X2 [Helianthus annuus]2.9e-0778.38Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V+YPA+IYE+MRYSVLAEGAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
XP_022140742.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Momordica charantia]1.5e-0889.19Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        +INR+LDEAVSV+YPA+IYEAMRYSVLAEGAKRAPPI
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
XP_030461357.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Syzygium oleosum]2.9e-0781.08Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V+YPA IYEAMRYSVLAEGAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
XP_035834415.1 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic isoform X1 [Helianthus annuus]2.9e-0778.38Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V+YPA+IYE+MRYSVLAEGAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
TrEMBL top hitse value%identityAlignment
A0A251TJJ9 Putative geranylgeranyl reductase1.4e-0778.38Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V+YPA+IYE+MRYSVLAEGAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
A0A251U2J5 Putative polyprenyl synthetase-related protein1.4e-0778.38Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V+YPA+IYE+MRYSVLAEGAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
A0A251U507 Putative polyprenyl synthetase-related protein1.4e-0778.38Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V+YPA+IYE+MRYSVLAEGAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
A0A2P2J6D8 Uncharacterized protein1.4e-0775.68Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN NLD+A+++RYP +IYEAMRYSVLA+GAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
A0A6J1CHX6 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic7.5e-0989.19Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        +INR+LDEAVSV+YPA+IYEAMRYSVLAEGAKRAPPI
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
SwissProt top hitse value%identityAlignment
Q39108 Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic4.2e-0975.68Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V++PA IYEAMRYSVLA+GAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
Arabidopsis top hitse value%identityAlignment
AT4G36810.1 geranylgeranyl pyrophosphate synthase 19.3e-0455.56Show/hide
Query:  INRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        +N+ LD AV +R P +I+EAMRYS+LA G KR  P+
Subjt:  INRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
AT4G38460.1 geranylgeranyl reductase3.0e-1075.68Show/hide
Query:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI
        EIN+ LDEA+ V++PA IYEAMRYSVLA+GAKRAPP+
Subjt:  EINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTTCCTCCTCACTTCACTTTCTGACTCACAATTCCACTATCCTTCTAAACCAAATATAGACAGTTCGATCAGCCACTTCTATTTCGAAATTAATCGGAATCTCGA
TGAAGCCGTTTCGGTTCGGTATCCGGCGGAGATCTACGAGGCTATGCGATACTCCGTCTTGGCCGAGGGGGCCAAGCGAGCCCCGCCGATTAGGGGAAATCAAATCGCCG
GAGAAATGGAAGCCAATAGAAAGGGCATTTTATGGAAGAGGAGTTTGGAGCTTCAGTTCGTAGGTGAGAAATCTCTCCCTTGCTTTCTGGAAACGCTTTTGTGTTTTGCT
TGGAGATTCTTGAGTGAATCGATGGATAATTTGATGTTCGGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTTCCTCCTCACTTCACTTTCTGACTCACAATTCCACTATCCTTCTAAACCAAATATAGACAGTTCGATCAGCCACTTCTATTTCGAAATTAATCGGAATCTCGA
TGAAGCCGTTTCGGTTCGGTATCCGGCGGAGATCTACGAGGCTATGCGATACTCCGTCTTGGCCGAGGGGGCCAAGCGAGCCCCGCCGATTAGGGGAAATCAAATCGCCG
GAGAAATGGAAGCCAATAGAAAGGGCATTTTATGGAAGAGGAGTTTGGAGCTTCAGTTCGTAGGTGAGAAATCTCTCCCTTGCTTTCTGGAAACGCTTTTGTGTTTTGCT
TGGAGATTCTTGAGTGAATCGATGGATAATTTGATGTTCGGTTGTTGA
Protein sequenceShow/hide protein sequence
MLFLLTSLSDSQFHYPSKPNIDSSISHFYFEINRNLDEAVSVRYPAEIYEAMRYSVLAEGAKRAPPIRGNQIAGEMEANRKGILWKRSLELQFVGEKSLPCFLETLLCFA
WRFLSESMDNLMFGC