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Lag0006469 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006469
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:42805917..42806450
RNA-Seq ExpressionLag0006469
SyntenyLag0006469
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4279811.1 unnamed protein product [Prunus armeniaca]4.1e-0727.53Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN
        +N DAAW   T   GV W++RDS G +V AGC    +  +   +EAKAI E +    +            + VESD+ ++IR++ GE   +  +  ++ +
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN

Query:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFNGDCSFINFDPSQPLRMDSAH---DQCKGWLFSILEKTVDVPLVL
        I ++V       F++ PR  N  AH +          +F++       R+   H   D    W+F IL   V++ + L
Subjt:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFNGDCSFINFDPSQPLRMDSAH---DQCKGWLFSILEKTVDVPLVL

XP_021808158.1 uncharacterized protein LOC110751913 [Prunus avium]3.2e-0731.85Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN
        +N D AWF      GV W+IRDS G L+ AG     +  +  ++E  AI   +   +         L H+M VESD    I ++NG+   +S++  ++ +
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN

Query:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFNG
        I ++V   +  SFVF P++ N +AH+VA   + +G
Subjt:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFNG

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]4.7e-1137.31Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN
        +NT+AAW   TN+ G+ WI+RD  G ++ A C  I  + NI  LE  AI EG+    R IR+      HL   ESD+ E I L++ + +D +EI  L++ 
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN

Query:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFN
        I +M+    + S     R  N +AH +AR A  N
Subjt:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.7e-0831.82Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN
        +N DA+W DST+  G+ WIIR   G +V AG   +   +N+K+LEA AI EG++  +       L +   + +E+D++E+  L+N + ED ++   +++ 
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN

Query:  IGRMVGLANVTSFVFCPRAGNILAHSVARAAT
        I  +     + +F    R  N  AHS+A+ A+
Subjt:  IGRMVGLANVTSFVFCPRAGNILAHSVARAAT

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.8e-1136.03Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVV--ESDASEIIRLINGEVEDNSEISLLI
        +NTDAAW   TN+ G+ WI+RD  G ++ A C  I  + NI  LE  AI EG++   R+    P+   H   +  ESD+ E I L++ + +D +EI  L+
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVV--ESDASEIIRLINGEVEDNSEISLLI

Query:  DNIGRMVGLANVTSFVFCPRAGNILAHSVARAATFN
        + I +M+    + S     R  N +AH +AR A  N
Subjt:  DNIGRMVGLANVTSFVFCPRAGNILAHSVARAATFN

TrEMBL top hitse value%identityAlignment
A0A2N9GM07 Reverse transcriptase domain-containing protein5.3e-0836.36Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGS-LVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLID
        +NTD A F     +G+  +IRD IGS L G  C  I    + +++EA AI+EG       +    L L H+ VVESDA  I+  IN E  D   I  +I 
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGS-LVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLID

Query:  NIGRMVGLANVTSFVFCPRAGNILAHSVARAA
        NIG ++   +     + PR  N++AH +A+ A
Subjt:  NIGRMVGLANVTSFVFCPRAGNILAHSVARAA

A0A6J1CP26 uncharacterized protein LOC1110134122.3e-1137.31Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN
        +NT+AAW   TN+ G+ WI+RD  G ++ A C  I  + NI  LE  AI EG+    R IR+      HL   ESD+ E I L++ + +D +EI  L++ 
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN

Query:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFN
        I +M+    + S     R  N +AH +AR A  N
Subjt:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFN

A0A6J1DNV9 uncharacterized protein LOC1110224031.8e-0831.82Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN
        +N DA+W DST+  G+ WIIR   G +V AG   +   +N+K+LEA AI EG++  +       L +   + +E+D++E+  L+N + ED ++   +++ 
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN

Query:  IGRMVGLANVTSFVFCPRAGNILAHSVARAAT
        I  +     + +F    R  N  AHS+A+ A+
Subjt:  IGRMVGLANVTSFVFCPRAGNILAHSVARAAT

A0A6J1DSV1 uncharacterized protein LOC1110236081.3e-1136.03Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVV--ESDASEIIRLINGEVEDNSEISLLI
        +NTDAAW   TN+ G+ WI+RD  G ++ A C  I  + NI  LE  AI EG++   R+    P+   H   +  ESD+ E I L++ + +D +EI  L+
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVV--ESDASEIIRLINGEVEDNSEISLLI

Query:  DNIGRMVGLANVTSFVFCPRAGNILAHSVARAATFN
        + I +M+    + S     R  N +AH +AR A  N
Subjt:  DNIGRMVGLANVTSFVFCPRAGNILAHSVARAATFN

A0A6P5S2T0 uncharacterized protein LOC1107519131.5e-0731.85Show/hide
Query:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN
        +N D AWF      GV W+IRDS G L+ AG     +  +  ++E  AI   +   +         L H+M VESD    I ++NG+   +S++  ++ +
Subjt:  MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDN

Query:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFNG
        I ++V   +  SFVF P++ N +AH+VA   + +G
Subjt:  IGRMVGLANVTSFVFCPRAGNILAHSVARAATFNG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATACCGACGCCGCTTGGTTTGACTCCACAAATTCTAGTGGAGTAAGCTGGATTATCCGTGACTCCATAGGTTCTTTGGTTGGAGCAGGGTGTGTGAAAATCAACAA
GAAAGACAACATTAAAATGTTGGAAGCTAAAGCGATAGAGGAAGGAATCAAATTTTTTTCAAGGAAAATCAGAGAGTATCCGTTACTGCTCAATCATCTGATGGTGGTTG
AGTCTGATGCCTCTGAGATTATTAGGCTCATCAATGGGGAAGTTGAAGACAATTCAGAGATTTCTCTGTTGATCGACAATATTGGAAGAATGGTGGGACTTGCGAATGTA
ACCTCTTTCGTTTTCTGCCCTAGGGCTGGTAATATTTTGGCGCATAGTGTAGCGCGCGCAGCAACCTTCAATGGTGATTGTAGTTTTATTAATTTTGATCCTTCTCAGCC
CTTGAGAATGGATTCCGCCCATGATCAGTGTAAGGGCTGGCTCTTCTCCATTTTGGAGAAAACTGTTGATGTTCCTCTTGTTCTGTTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATACCGACGCCGCTTGGTTTGACTCCACAAATTCTAGTGGAGTAAGCTGGATTATCCGTGACTCCATAGGTTCTTTGGTTGGAGCAGGGTGTGTGAAAATCAACAA
GAAAGACAACATTAAAATGTTGGAAGCTAAAGCGATAGAGGAAGGAATCAAATTTTTTTCAAGGAAAATCAGAGAGTATCCGTTACTGCTCAATCATCTGATGGTGGTTG
AGTCTGATGCCTCTGAGATTATTAGGCTCATCAATGGGGAAGTTGAAGACAATTCAGAGATTTCTCTGTTGATCGACAATATTGGAAGAATGGTGGGACTTGCGAATGTA
ACCTCTTTCGTTTTCTGCCCTAGGGCTGGTAATATTTTGGCGCATAGTGTAGCGCGCGCAGCAACCTTCAATGGTGATTGTAGTTTTATTAATTTTGATCCTTCTCAGCC
CTTGAGAATGGATTCCGCCCATGATCAGTGTAAGGGCTGGCTCTTCTCCATTTTGGAGAAAACTGTTGATGTTCCTCTTGTTCTGTTCTTTTAA
Protein sequenceShow/hide protein sequence
MNTDAAWFDSTNSSGVSWIIRDSIGSLVGAGCVKINKKDNIKMLEAKAIEEGIKFFSRKIREYPLLLNHLMVVESDASEIIRLINGEVEDNSEISLLIDNIGRMVGLANV
TSFVFCPRAGNILAHSVARAATFNGDCSFINFDPSQPLRMDSAHDQCKGWLFSILEKTVDVPLVLFF