CuGenDBv2

Gene ID	Lag0006470
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	40S ribosomal protein S23-1
Genome location	chr6:42831986..42833284
RNA-Seq Expression	Lag0006470
Synteny	Lag0006470
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022156333.1 uncharacterized protein LOC111023254 [Momordica charantia]

3.0e-43

81.74

Show/hide

Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRR LGFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHY                GPRITVPRSLRWAACGA SMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKVVR
        EPQNIAAYDKRKVVR
Subjt:  EPQNIAAYDKRKVVR

XP_022937466.1 uncharacterized protein LOC111443868 [Cucurbita moschata]

2.3e-43

81.74

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Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHY                GPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKVVR
        EPQNIAAYDK +  R
Subjt:  EPQNIAAYDKRKVVR

XP_022969628.1 uncharacterized protein LOC111468599 [Cucurbita maxima]

8.0e-44

82.61

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Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHY                GPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKVVR
        EPQNIAAYDK K  R
Subjt:  EPQNIAAYDKRKVVR

XP_023538321.1 uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo]

1.8e-43

81.74

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Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRRF GFSDG+LMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHY                GPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKVVR
        EPQNIAAYDK K  R
Subjt:  EPQNIAAYDKRKVVR

XP_038889141.1 uncharacterized protein LOC120079031 [Benincasa hispida]

2.5e-45

84.35

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Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRRFLGFSDGE+MRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHY                GPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKVVR
        EPQNIAAYDKRKVV+
Subjt:  EPQNIAAYDKRKVVR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BWM4 uncharacterized protein LOC103493937

3.4e-40

76.99

Show/hide

Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHY                GPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKV
        EPQNIAAYD+ K+
Subjt:  EPQNIAAYDKRKV

A0A5D3BBN9 40S ribosomal protein S23-1

3.4e-40

76.99

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Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRR LGFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHY                GPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKV
        EPQNIAAYD+ K+
Subjt:  EPQNIAAYDKRKV

A0A6J1DQC3 uncharacterized protein LOC111023254

1.5e-43

81.74

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Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRR LGFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHY                GPRITVPRSLRWAACGA SMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKVVR
        EPQNIAAYDKRKVVR
Subjt:  EPQNIAAYDKRKVVR

A0A6J1FAF1 uncharacterized protein LOC111443868

1.1e-43

81.74

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Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHY                GPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKVVR
        EPQNIAAYDK +  R
Subjt:  EPQNIAAYDKRKVVR

A0A6J1I1J3 uncharacterized protein LOC111468599

3.9e-44

82.61

Show/hide

Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALRRF GFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHY                GPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRKVVR
        EPQNIAAYDK K  R
Subjt:  EPQNIAAYDKRKVVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G57540.1 unknown protein

3.5e-37

66.96

Show/hide

Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHY                GPRITVPRSLRWA CGA S+S ++A+LVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRK
        EPQNIAAYD  K
Subjt:  EPQNIAAYDKRK

AT1G57540.2 unknown protein

3.5e-37

66.96

Show/hide

Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHY                GPRITVPRSLRWA CGA S+S ++A+LVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRK
        EPQNIAAYD  K
Subjt:  EPQNIAAYDKRK

AT1G57540.3 unknown protein

3.5e-37

66.96

Show/hide

Query:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC
        MALR+ LG+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHY                GPRITVPRSLRWA CGA S+S ++A+LVRLFSPEC
Subjt:  MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPEC

Query:  EPQNIAAYDKRK
        EPQNIAAYD  K
Subjt:  EPQNIAAYDKRK

Sequences

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CDS sequence

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ATGGCACTTAGACGATTCTTAGGCTTTTCAGATGGTGAGCTAATGAGATCAGATGCTAAACCCTGTTCACAGTTGATGAAACAGACTGCTGGGTTATGTACTGTTGGAGG
AGGACTTGCATTCTGGATTCTCTGTAGATTACATTATGCTAGGTCTTATTCTTTTGGATTGGGACCCGTTCCAGTAGTTTTGGCAGGTCCAAGAATTACAGTACCTAGGA
GCCTTCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGTGCAACCTCGGCTTTGCTTGTCCGCTTGTTTAGTCCAGAATGTGAACCCCAGAATATTGCTGCTTATGACAAA
AGGAAAGTTGTGAGGTAA

mRNA sequence

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Protein sequence

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MALRRFLGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYARSYSFGLGPVPVVLAGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDK
RKVVR

Lag0006470 (gene) of Sponge gourd (AG-4) v1 genome