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Lag0006522 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006522
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCleavage and polyadenylation specificity factor subunit 5
Genome locationchr6:43264158..43264544
RNA-Seq ExpressionLag0006522
SyntenyLag0006522
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU21522.1 hypothetical protein TSUD_34850 [Trifolium subterraneum]4.4e-1150.7Show/hide
Query:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAED
        M FD+G+E+ NVG++G+ ++  G+ +L++  A+GDEMGEDL+GLV+AMAEE+ VDL E+  GF  VK+ ++
Subjt:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAED

KAG6586228.1 hypothetical protein SDJN03_18961, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3073.53Show/hide
Query:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAHIIQNAKY-DTEIREELKK
        MGFDHGIE+ NVGILGLGK+AIGIGN V SSANGDEMGEDL+GLVK M EEVGVDLSEMG GFVA KEAEDSPLD+  VLAH+++  +Y +   R EL+ 
Subjt:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAHIIQNAKY-DTEIREELKK

Query:  MK
        MK
Subjt:  MK

PNX77350.1 hypothetical protein L195_g033314, partial [Trifolium pratense]3.1e-1254.93Show/hide
Query:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAED
        MGFD G+EE NVG++G+ +   G+ +L++  A+GDEMGE+L+GLV+AMAEE+GVDL E+  GF  VK+ E+
Subjt:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAED

RXI06115.1 hypothetical protein DVH24_018157 [Malus domestica]3.2e-0977.08Show/hide
Query:  DEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH
        DE+GEDLI L KAMAEEVGVDL+EMGSGFVA++EAEDSPL L    AH
Subjt:  DEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH

TQD85149.1 hypothetical protein C1H46_029323 [Malus baccata]9.0e-0477.14Show/hide
Query:  MAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH
        MAEEVGVDL+EMGSGFVA++EAEDSPL L    AH
Subjt:  MAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH

TrEMBL top hitse value%identityAlignment
A0A2K3LFP3 Uncharacterized protein (Fragment)1.5e-1254.93Show/hide
Query:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAED
        MGFD G+EE NVG++G+ +   G+ +L++  A+GDEMGE+L+GLV+AMAEE+GVDL E+  GF  VK+ E+
Subjt:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAED

A0A2Z6M7Y1 Uncharacterized protein2.2e-1150.7Show/hide
Query:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAED
        M FD+G+E+ NVG++G+ ++  G+ +L++  A+GDEMGEDL+GLV+AMAEE+ VDL E+  GF  VK+ ++
Subjt:  MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAED

A0A498HT63 Cleavage and polyadenylation specificity factor subunit 57.4e-0462.22Show/hide
Query:  GEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH
        G DL+ L KAM EE GVDL E GSGFVAV+EAE+ PL      AH
Subjt:  GEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH

A0A498KK20 Uncharacterized protein1.5e-0977.08Show/hide
Query:  DEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH
        DE+GEDLI L KAMAEEVGVDL+EMGSGFVA++EAEDSPL L    AH
Subjt:  DEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH

A0A540LFP2 Uncharacterized protein4.3e-0477.14Show/hide
Query:  MAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH
        MAEEVGVDL+EMGSGFVA++EAEDSPL L    AH
Subjt:  MAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTTGATCATGGAATTGAAGAGAATAATGTTGGGATTTTGGGATTGGGAAAAGAGGCGATTGGCATAGGCAACCTTGTTGAAAGCTCCGCAAATGGAGATGAAAT
GGGCGAGGATTTGATTGGATTGGTGAAGGCCATGGCGGAGGAAGTGGGCGTGGATTTGAGTGAGATGGGTTCGGGATTTGTGGCCGTGAAGGAGGCGGAGGATTCTCCGC
TCGATCTCGCGACAGTTCTTGCTCATATTATACAGAATGCTAAATACGATACAGAGATACGAGAAGAATTGAAGAAGATGAAGAAGAAGACACCACATATATTATTTGCT
TTTGATCCCATTTTGGTTGGAAATTTTGTAAGATCGTTCTATTCTATTTTAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTTGATCATGGAATTGAAGAGAATAATGTTGGGATTTTGGGATTGGGAAAAGAGGCGATTGGCATAGGCAACCTTGTTGAAAGCTCCGCAAATGGAGATGAAAT
GGGCGAGGATTTGATTGGATTGGTGAAGGCCATGGCGGAGGAAGTGGGCGTGGATTTGAGTGAGATGGGTTCGGGATTTGTGGCCGTGAAGGAGGCGGAGGATTCTCCGC
TCGATCTCGCGACAGTTCTTGCTCATATTATACAGAATGCTAAATACGATACAGAGATACGAGAAGAATTGAAGAAGATGAAGAAGAAGACACCACATATATTATTTGCT
TTTGATCCCATTTTGGTTGGAAATTTTGTAAGATCGTTCTATTCTATTTTAGTCTAA
Protein sequenceShow/hide protein sequence
MGFDHGIEENNVGILGLGKEAIGIGNLVESSANGDEMGEDLIGLVKAMAEEVGVDLSEMGSGFVAVKEAEDSPLDLATVLAHIIQNAKYDTEIREELKKMKKKTPHILFA
FDPILVGNFVRSFYSILV