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Lag0006551 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006551
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:43535055..43536229
RNA-Seq ExpressionLag0006551
SyntenyLag0006551
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019185981.1 PREDICTED: uncharacterized protein LOC109180726 [Ipomoea nil]2.4e-1428.72Show/hide
Query:  FITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKL----IADLCP----ISLESPKTSDHALFLY---PRARKVWE--
        F+    +W  + L     + DV +I  +P+S R  PD W W  +  GKYTVKS Y++    +AD  P      LE P   + AL L+      RK+W   
Subjt:  FITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKL----IADLCP----ISLESPKTSDHALFLY---PRARKVWE--

Query:  ----GVFPDVVDRWEGRMDINDRW---------IGLSNCKTID--LNLLCVGAI---------LNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQI
                 VV    G M +  +W         IG++    +       C GA+         LN D   DA N  +GMG ++RD  G  +AA       
Subjt:  ----GVFPDVVDRWEGRMDINDRW---------IGLSNCKTID--LNLLCVGAI---------LNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQI

Query:  GSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSLHFVPKCGK
               EAV V E L + +GLG   + V TDS  +  A+  N    S  G ++ D++ +      V F   RR  NR  H  A+ ++  +  CG+
Subjt:  GSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSLHFVPKCGK

XP_030479476.1 uncharacterized protein LOC115696730 [Cannabis sativa]1.2e-1628.14Show/hide
Query:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGVFP------
        V  FIT   +W++  LN Y    DV+ I  +P+S   + D+ IWH    G YTV SG+ L  +L   + E+  +++H  +     +  W    P      
Subjt:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGVFP------

Query:  --DVVDRWEGRMDINDRWIGLSNCKTIDLNLLC-VGAILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMK
          D+V     R  + +R     +C  +  +    +G  +N+DA  +  ++ +G+G ++RD  G ++AA S+  Q    S  +EA  +   L +A+ L ++
Subjt:  --DVVDRWEGRMDINDRWIGLSNCKTIDLNLLC-VGAILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMK

Query:  CVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSL
           V TD+L + SAI       S    ++ D+  L   F  V+ SHV+R  N+ A+G A+ +L
Subjt:  CVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSL

XP_030483769.1 uncharacterized protein LOC115700339 [Cannabis sativa]4.4e-1624.18Show/hide
Query:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADL------------------------------------
        V+D+ITP  +W++D L       DV+ I  +P+S     D+WIWH D  G Y+V +GY   + L                                    
Subjt:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADL------------------------------------

Query:  --------------------CPISLESPKTSDHALFLYPRARKVWEGVFPDVVDRWEGRMDINDRWI------GLSNCKTIDLNLLCVG-----------
                            C +   + +T  HALF    A++VW+        +   RM   D  I      G+     I  +   +G           
Subjt:  --------------------CPISLESPKTSDHALFLYPRARKVWEGVFPDVVDRWEGRMDINDRWI------GLSNCKTIDLNLLCVG-----------

Query:  --------AILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTI
                  +N+DA  D+   +IG+G+++R+  G +LAA S+ ++    S  +EA  +  GL +A  L +    V TD L L +A+       S    +
Subjt:  --------AILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTI

Query:  LSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSL
        +SD+ +    F  V  SH++R  N+ AHG A+ +L
Subjt:  LSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSL

XP_030503504.1 uncharacterized protein LOC115718825 [Cannabis sativa]4.9e-1526.51Show/hide
Query:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDH----------------ALFLYPR
        V D+ITP+  W V +L+      DV+ I ++P+S     D +IWH+   G YTV+SGY L   L   +  +   S                  AL +Y  
Subjt:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDH----------------ALFLYPR

Query:  ARKVWEGVFPDVVDR----------------WEGRMDINDRWIGLSNCKTIDLNLLCVG------------AILNIDATFDAINRRIGMGMVLRDRQGLL
         R     +   VV+                 + G M     +   S+  +I  N   V               LN+DA   +   ++G G V+RD +G++
Subjt:  ARKVWEGVFPDVVDR----------------WEGRMDINDRWIGLSNCKTIDLNLLCVG------------AILNIDATFDAINRRIGMGMVLRDRQGLL

Query:  LAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSL
        LAA S+       S  +EA  +   L ++  + ++   + TDSL L  AI +          ++ D+++L  +F  V  SHVRR  N+ AHG A+ +L
Subjt:  LAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSL

XP_031107819.1 uncharacterized protein LOC116012428 [Ipomoea triloba]8.3e-1529.17Show/hide
Query:  WHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARK-VWEGVFPDVVDRWEGRMDINDR
        W +D +       DV MI ++PIS R  PD+W+WH+D  G ++VKS YK +   C  + + P  S   L + P+ +   W+     +  R          
Subjt:  WHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARK-VWEGVFPDVVDRWEGRMDINDR

Query:  WIGLSNCKTIDLNLLC--------VGAI------------LNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLG
               + ++ +LLC         GA             LN DA+ D  N  +G G V+RD  G  LA+ +++     +    EA+ + E L + +  G
Subjt:  WIGLSNCKTIDLNLLC--------VGAI------------LNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLG

Query:  MKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSS
        +  V V TDS  L +AI+      S  G ++SDI+ L      V FS V+R  NR AH  A+ +
Subjt:  MKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSS

TrEMBL top hitse value%identityAlignment
A0A7N2KZZ0 RNase H domain-containing protein2.1e-1929.15Show/hide
Query:  WHVDKLNQYLCREDVEMITQLPISRT-TPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGVFPDVVDRWEGRMDIND-R
        W  D ++      +   I ++P+S   TPD   W  ++ G Y++KS   L    CP     P+T  HAL+L P+   VW   F  +          ND  
Subjt:  WHVDKLNQYLCREDVEMITQLPISRT-TPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGVFPDVVDRWEGRMDIND-R

Query:  WIGLSNCKTIDLNLLC--------------------------VGAI-LNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGL
         +   +   I+   L                           +G + +N D    +     G+ MV+RD+ GL+LA+ SQ   + +S   VE +     L
Subjt:  WIGLSNCKTIDLNLLC--------------------------VGAI-LNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGL

Query:  CFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSS
          AR LG + VMV  DS  +  AI++  L  S +G IL DIR L  SF+ +SF H++R  N +AH  A  S
Subjt:  CFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSS

A0A803P9C5 Uncharacterized protein1.9e-1726.37Show/hide
Query:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADL-------CPISLE----SPKTSDHALFLYPRARKVW
        V D+I+ + +W+++ LN +    DVE I  +P+S   T D+WIWH+D  G Y+V +GY   + L       C  + E    + ++  HALF    A+ VW
Subjt:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADL-------CPISLE----SPKTSDHALFLYPRARKVW

Query:  ----------------EGVFPDVVDRWEGRMDIND----RWIGLSNCKT-IDLNLLCVGAI-------------------LNIDATFDAINRRIGMGMVL
                        +G +   +     + D+       W   SN  + I      VG +                   LN+DA  D+   +IG+G+++
Subjt:  ----------------EGVFPDVVDRWEGRMDIND----RWIGLSNCKT-IDLNLLCVGAI-------------------LNIDATFDAINRRIGMGMVL

Query:  RDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGS
        R+  G ++ A S+ +     S  +EA  +  GL +A+   +    V TD L L +A+       S    ++SD+     SF  V  SHV+R  N+ AH  
Subjt:  RDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGS

Query:  AQSSLHFVPKC
        A+ +L     C
Subjt:  AQSSLHFVPKC

A0A803Q3C1 Uncharacterized protein9.6e-1726.03Show/hide
Query:  VQWHVDKLNQYLCREDVEMITQLPISRTT-PDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGV-FPDVVDRWEG-----
        + W ++ LN      D E+I Q+P++ TT  D  IW  +  G YT+KS YK + +L        ++  HAL   P A+  W+    P +  +        
Subjt:  VQWHVDKLNQYLCREDVEMITQLPISRTT-PDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGV-FPDVVDRWEG-----

Query:  -----RMDINDRWIGLS------------NCKTIDLNLLCVG-----------------AILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGS
             RM+  DR + ++            N  +  L LL  G                   +N+DAT    +R  G+G V RD +GLL+   ++   + +
Subjt:  -----RMDINDRWIGLS------------NCKTIDLNLLCVG-----------------AILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGS

Query:  SSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSLHFVPKC
        +    EAV + E L + +  G++ V++ TD LS+  A++ + +  S  G ++++ ++L +    V    +RR  N +AH  A++S+ F P C
Subjt:  SSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSLHFVPKC

A0A803QED6 Uncharacterized protein5.6e-1728.14Show/hide
Query:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGVFP------
        V  FIT   +W++  LN Y    DV+ I  +P+S   + D+ IWH    G YTV SG+ L  +L   + E+  +++H  +     +  W    P      
Subjt:  VTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGVFP------

Query:  --DVVDRWEGRMDINDRWIGLSNCKTIDLNLLC-VGAILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMK
          D+V     R  + +R     +C  +  +    +G  +N+DA  +  ++ +G+G ++RD  G ++AA S+  Q    S  +EA  +   L +A+ L ++
Subjt:  --DVVDRWEGRMDINDRWIGLSNCKTIDLNLLC-VGAILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMK

Query:  CVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSL
           V TD+L + SAI       S    ++ D+  L   F  V+ SHV+R  N+ A+G A+ +L
Subjt:  CVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSL

A0A803QFF3 Uncharacterized protein6.6e-1827.18Show/hide
Query:  MWVTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYP-RARKV---------
        M V+ FI  +++W++D L+ Y  + D++ I  +P+S   + D+ IWH++  G+Y+VKSG+ L   +   + ES      + FL+  R+ K          
Subjt:  MWVTDFITPSVQWHVDKLNQYLCREDVEMITQLPIS-RTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYP-RARKV---------

Query:  ---WEGVFPDVVDRWEGRMDIN----DRWIG----------------LSNCKTIDLNLLC------------------VGAIL--NIDATFDAINRRIGM
            E V P         +D N    +R  G                  N   +  NL                    VG  L  N+DA  +  ++++G+
Subjt:  ---WEGVFPDVVDRWEGRMDIN----DRWIG----------------LSNCKTIDLNLLC------------------VGAIL--NIDATFDAINRRIGM

Query:  GMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRI
        G V+R+ QG ++AA S+ SQ    S  +EA  +   L +A    +   +V TD+L + SA+       S    ++ D+R L  SF  V+ +HVRR+ N+ 
Subjt:  GMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGESCIGTILSDIRSLWDSFDRVSFSHVRRRFNRI

Query:  AHGSAQSSL
        AHG A+ +L
Subjt:  AHGSAQSSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22440.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1)1.4e-0433.33Show/hide
Query:  MWVTDFITPSVQ-WHVDKLNQYLCREDVEMITQLPISRT-TPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESP
        ++V D I  +   W +D+L   +   D+ +I  +  SRT   D + W   K G YTVKSGY +  DL   + + P
Subjt:  MWVTDFITPSVQ-WHVDKLNQYLCREDVEMITQLPISRT-TPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESP

AT3G09510.1 Ribonuclease H-like superfamily protein4.1e-0435.29Show/hide
Query:  WHVDKLNQYLCREDVEMITQLPISRT-TPDKWIWHFDKYGKYTVKSGYKLI
        W   K++Q++ + D   I ++ ++++  PDK IW+++  G+YTV+SGY L+
Subjt:  WHVDKLNQYLCREDVEMITQLPISRT-TPDKWIWHFDKYGKYTVKSGYKLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATGAAGGCATGTGGGTCACAGATTTCATCACTCCGTCTGTTCAGTGGCATGTGGACAAGTTAAATCAATATTTGTGTAGGGAAGATGTAGAGATGATCACACA
ACTTCCTATAAGCAGGACGACTCCTGACAAGTGGATATGGCATTTTGATAAATATGGGAAGTATACAGTTAAGAGTGGATATAAATTAATTGCAGATCTTTGCCCTATTT
CTCTGGAGAGCCCGAAGACGTCAGATCATGCTCTATTTCTCTATCCTCGGGCTAGGAAAGTTTGGGAGGGTGTTTTCCCTGATGTTGTGGATAGGTGGGAAGGAAGAATG
GATATCAATGATCGATGGATTGGTTTAAGTAATTGTAAAACGATTGATTTGAACTTGTTATGTGTCGGGGCCATTCTGAATATTGATGCGACGTTTGATGCGATCAATCG
GAGGATTGGAATGGGGATGGTGTTACGTGATAGGCAGGGTCTTCTTTTGGCAGCATCTTCTCAAGCTTCACAAATTGGTTCTTCCTCGCTATATGTTGAGGCGGTTGTAG
TTCTAGAAGGTCTTTGTTTTGCCAGAGGTTTGGGTATGAAATGCGTAATGGTCCTAACAGATTCCCTCTCATTGCCTTCTGCCATTCAGGATAATCGCCTGGGTGAATCT
TGTATTGGCACAATTTTGTCAGATATTAGAAGTCTGTGGGATTCATTTGATAGGGTATCTTTTTCTCATGTACGAAGACGGTTCAATAGAATCGCGCATGGGTCGGCCCA
ATCGAGCCTTCATTTTGTTCCAAAGTGTGGAAAGATAATTATCCGAATTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAATGAAGGCATGTGGGTCACAGATTTCATCACTCCGTCTGTTCAGTGGCATGTGGACAAGTTAAATCAATATTTGTGTAGGGAAGATGTAGAGATGATCACACA
ACTTCCTATAAGCAGGACGACTCCTGACAAGTGGATATGGCATTTTGATAAATATGGGAAGTATACAGTTAAGAGTGGATATAAATTAATTGCAGATCTTTGCCCTATTT
CTCTGGAGAGCCCGAAGACGTCAGATCATGCTCTATTTCTCTATCCTCGGGCTAGGAAAGTTTGGGAGGGTGTTTTCCCTGATGTTGTGGATAGGTGGGAAGGAAGAATG
GATATCAATGATCGATGGATTGGTTTAAGTAATTGTAAAACGATTGATTTGAACTTGTTATGTGTCGGGGCCATTCTGAATATTGATGCGACGTTTGATGCGATCAATCG
GAGGATTGGAATGGGGATGGTGTTACGTGATAGGCAGGGTCTTCTTTTGGCAGCATCTTCTCAAGCTTCACAAATTGGTTCTTCCTCGCTATATGTTGAGGCGGTTGTAG
TTCTAGAAGGTCTTTGTTTTGCCAGAGGTTTGGGTATGAAATGCGTAATGGTCCTAACAGATTCCCTCTCATTGCCTTCTGCCATTCAGGATAATCGCCTGGGTGAATCT
TGTATTGGCACAATTTTGTCAGATATTAGAAGTCTGTGGGATTCATTTGATAGGGTATCTTTTTCTCATGTACGAAGACGGTTCAATAGAATCGCGCATGGGTCGGCCCA
ATCGAGCCTTCATTTTGTTCCAAAGTGTGGAAAGATAATTATCCGAATTGGATAA
Protein sequenceShow/hide protein sequence
MDNEGMWVTDFITPSVQWHVDKLNQYLCREDVEMITQLPISRTTPDKWIWHFDKYGKYTVKSGYKLIADLCPISLESPKTSDHALFLYPRARKVWEGVFPDVVDRWEGRM
DINDRWIGLSNCKTIDLNLLCVGAILNIDATFDAINRRIGMGMVLRDRQGLLLAASSQASQIGSSSLYVEAVVVLEGLCFARGLGMKCVMVLTDSLSLPSAIQDNRLGES
CIGTILSDIRSLWDSFDRVSFSHVRRRFNRIAHGSAQSSLHFVPKCGKIIIRIG