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Lag0006597 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006597
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr6:44057000..44059767
RNA-Seq ExpressionLag0006597
SyntenyLag0006597
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN75440.1 hypothetical protein VITISV_007304 [Vitis vinifera]7.4e-0562.5Show/hide
Query:  VFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        + L  D ++ +C     RNVSRID L+KQLSKSFAMKDLGP K+ILGI
Subjt:  VFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
RVW31737.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.3e-0584.85Show/hide
Query:  PTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        P +NVSRID L+KQLSKSFAMKDLGPAK+ILGI
Subjt:  PTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
RVW74036.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]7.4e-0562.5Show/hide
Query:  VFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        + L  D ++ +C     RNVSRID L+KQLSKSFAMKDLGP K+ILGI
Subjt:  VFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
RVW83457.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.3e-0584.85Show/hide
Query:  PTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        P +NVSRID L+KQLSKSFAMKDLGPAK+ILGI
Subjt:  PTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
TYK14965.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.3e-0590.32Show/hide
Query:  RNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        RNVSRID L+KQLSKSFAMKDLGPAKK+LGI
Subjt:  RNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
TrEMBL top hitse value%identityAlignment
A0A438D8F1 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-0584.85Show/hide
Query:  PTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        P +NVSRID L+KQLSKSFAMKDLGPAK+ILGI
Subjt:  PTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
A0A438GP95 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-0562.5Show/hide
Query:  VFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        + L  D ++ +C     RNVSRID L+KQLSKSFAMKDLGP K+ILGI
Subjt:  VFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
A0A438HG65 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-0584.85Show/hide
Query:  PTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        P +NVSRID L+KQLSKSFAMKDLGPAK+ILGI
Subjt:  PTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
A0A5D3CTW0 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-0590.32Show/hide
Query:  RNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        RNVSRID L+KQLSKSFAMKDLGPAKK+LGI
Subjt:  RNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
A5C9D7 Integrase catalytic domain-containing protein3.6e-0562.5Show/hide
Query:  VFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
        + L  D ++ +C     RNVSRID L+KQLSKSFAMKDLGP K+ILGI
Subjt:  VFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPAKKILGI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATACGTGTTCGTCGGCGTACCGGATGAAGGTCGCGGGGATGGCAGGGGGGGCGTCGACGTGATGCGAGAGGTGCAGGTAGTAAATATGCAGATGGACAGGAATGT
TGTTCCTGATCAATGGAGTTCAGAGAGGTTCTTAGGTGCAGGTAGTAAATATGCAGATGGACAGGAATGTTGTTCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTG
ACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGGAATGTTTCGAGAATTGACATGTTGAGGAAACAGTTGAGCAAATCCTTTGCCATGAAGGATTTGGGGCCAGCA
AAGAAAATTCTTGGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATACGTGTTCGTCGGCGTACCGGATGAAGGTCGCGGGGATGGCAGGGGGGGCGTCGACGTGATGCGAGAGGTGCAGGTAGTAAATATGCAGATGGACAGGAATGT
TGTTCCTGATCAATGGAGTTCAGAGAGGTTCTTAGGTGCAGGTAGTAAATATGCAGATGGACAGGAATGTTGTTCTGATCAATGGAGTTCAGAGGTGTTTCTCTCTACTG
ACGGGGTGGTTGAACTTTGTACTCATTGTCCGACAAGGAATGTTTCGAGAATTGACATGTTGAGGAAACAGTTGAGCAAATCCTTTGCCATGAAGGATTTGGGGCCAGCA
AAGAAAATTCTTGGAATTTGA
Protein sequenceShow/hide protein sequence
MQYVFVGVPDEGRGDGRGGVDVMREVQVVNMQMDRNVVPDQWSSERFLGAGSKYADGQECCSDQWSSEVFLSTDGVVELCTHCPTRNVSRIDMLRKQLSKSFAMKDLGPA
KKILGI