; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006672 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006672
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S ribosomal protein L18
Genome locationchr6:44786186..44786497
RNA-Seq ExpressionLag0006672
SyntenyLag0006672
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063646.1 putative manganese-transporting ATPase PDR2 [Cucumis melo var. makuwa]2.0e-4698.06Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

XP_004139203.1 uncharacterized protein LOC101215592 [Cucumis sativus]2.0e-4698.06Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

XP_008455473.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo]2.0e-4698.06Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

XP_022150717.1 uncharacterized protein LOC111018783 [Momordica charantia]1.8e-47100Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

XP_038890306.1 50S ribosomal protein L18 [Benincasa hispida]6.9e-4799.03Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

TrEMBL top hitse value%identityAlignment
A0A0A0LLI4 Uncharacterized protein9.7e-4798.06Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

A0A1S3C286 50S ribosomal protein L189.7e-4798.06Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

A0A5A7VB47 Putative manganese-transporting ATPase PDR29.7e-4798.06Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

A0A6J1DBH5 uncharacterized protein LOC1110187838.8e-48100Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

A0A6J1KIR9 uncharacterized protein LOC1114936111.7e-4697.09Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YLE
Subjt:  YLE

SwissProt top hitse value%identityAlignment
A9W4S4 50S ribosomal protein L185.7e-0431.52Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L VF S + +   +      + +A A +  KD+K+ LK+ +D  A  AVG ++AERA+ A V T     R    F G+++A+  +  + G+D
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

B1LWR0 50S ribosomal protein L183.4e-0431.52Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L VF S + +   +   V  K +A A +  K +K  LK+ +D+ A  AVG ++AERA+ A V T     R    + G+++AV ++  + G++
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

B1Z777 50S ribosomal protein L182.6e-0432.61Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L VF S + +   +      + +A A +  KD+KA LK+ +D  A  AVG ++AERA+ A V T     R    F G+++A+  +  + G+D
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

B7L0T4 50S ribosomal protein L185.7e-0431.52Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L VF S + +   +      + +A A +  KD+K+ LK+ +D  A  AVG ++AERA+ A V T     R    F G+++A+  +  + G+D
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

C3MAZ6 50S ribosomal protein L181.5e-0431.52Show/hide
Query:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID
        L V  S + + A +   V  K +A A T   D+K+ LK+ +D  A  AVG +LAERA +A V    +  R    + G+++A+ ++  + G++
Subjt:  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein5.6e-4787.38Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++G IL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YL+
Subjt:  YLE

AT1G08845.2 Ribosomal L18p/L5e family protein5.6e-4787.38Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI
        MEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++G IL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKI

Query:  YLE
        YL+
Subjt:  YLE

AT3G20230.1 Ribosomal L18p/L5e family protein5.0e-1943.75Show/hide
Query:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
        M PF L+VF S++F+ A + HR T K ++VA TN++DI+  + S  D  AC  +G ++AER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Subjt:  MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI

AT3G22450.1 Ribosomal L18p/L5e family protein8.8e-2452.48Show/hide
Query:  PFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYL
        PF LD++ISK  V A + HRVT K V VA + SKD+K  L SR ++ AC AVG++LA+R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L
Subjt:  PFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYL

Query:  E
        +
Subjt:  E


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCATTTACACTTGATGTGTTCATCTCAAAGCGGTTCGTTTCAGCATCACTTACGCACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGA
TATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGTTTGGCTGTTGGCAGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACAC
CAAGAGAGAGGGACAAATTTGAAGGGAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATAGATGTCAAAATTTATCTGGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCATTTACACTTGATGTGTTCATCTCAAAGCGGTTCGTTTCAGCATCACTTACGCACAGGGTGACTTGCAAACAAGTTGCAGTTGCAGGTACTAACTCAAAAGA
TATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGTTTGGCTGTTGGCAGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACAC
CAAGAGAGAGGGACAAATTTGAAGGGAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATAGATGTCAAAATTTATCTGGAGTAA
Protein sequenceShow/hide protein sequence
MEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE