CuGenDBv2

Gene ID	Lag0006684
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	eIF-2B GDP-GTP exchange factor subunit epsilon
Genome location	chr6:44920121..44921633
RNA-Seq Expression	Lag0006684
Synteny	Lag0006684
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0050790 - regulation of catalytic activity (biological process) GO:0005851 - eukaryotic translation initiation factor 2B complex (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0005085 - guanyl-nucleotide exchange factor activity (molecular function) GO:0016746 - transferase activity, transferring acyl groups (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function) GO:0031369 - translation initiation factor binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6586287.1 hypothetical protein SDJN03_19020, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-13

79.63

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND
        +L ++V+VGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE  + G+ D
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND

KAG7021134.1 hypothetical protein SDJN02_17822, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.9e-13

79.63

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND
        +L ++V+VGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE  + G+ D
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND

XP_022143110.1 translation initiation factor eIF-2B subunit epsilon [Momordica charantia]

3.0e-13

81.48

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND
        VL ++VV+GDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE  + G+ D
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND

XP_022965598.1 translation initiation factor eIF-2B subunit epsilon-like [Cucurbita maxima]

2.3e-13

76.79

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSNDDI
        +L ++V+VGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE  + G+ D +
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSNDDI

XP_023537934.1 translation initiation factor eIF-2B subunit epsilon isoform X2 [Cucurbita pepo subsp. pepo]

1.2e-14

78.18

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSNDD
        +L ++V+VGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVEC+ + S+ +
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSNDD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VDS3 eIF-2B GDP-GTP exchange factor subunit epsilon

9.5e-13

86.96

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE
        +L ++VVVGDQF VPSYSKVSLF+QPTNQDSDEELEYADNSSGIVE
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE

A0A6J1CMU9 eIF-2B GDP-GTP exchange factor subunit epsilon

1.5e-13

81.48

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND
        VL ++VV+GDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE  + G+ D
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND

A0A6J1FCW3 eIF-2B GDP-GTP exchange factor subunit epsilon

1.9e-13

79.63

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND
        +L ++V+VGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE  + G+ D
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSND

A0A6J1HPG2 eIF-2B GDP-GTP exchange factor subunit epsilon

1.1e-13

76.79

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSNDDI
        +L ++V+VGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE  + G+ D +
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSNDDI

E5GBQ7 eIF-2B GDP-GTP exchange factor subunit epsilon

9.5e-13

86.96

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE
        +L ++VVVGDQF VPSYSKVSLF+QPTNQDSDEELEYADNSSGIVE
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G34970.1 Trimeric LpxA-like enzyme

1.0e-11

71.74

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE
        VL + VVVG  FVVP+YSKVSL QQPT +DSDEELEYAD+SSG  +
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVE

AT3G02270.1 Trimeric LpxA-like enzyme

1.9e-05

64.71

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEE
        VL ++VVVG  FVVP+YS+VSL +QP  +DSDEE
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEE

AT4G18300.1 Trimeric LpxA-like enzyme

7.9e-12

70.83

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Query:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECS
        VL + VVVG  FVVP+YSKVSL QQPT +DSDEELEYAD+SSG  + S
Subjt:  VLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECS

Sequences

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CDS sequence

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ATGGATTTGATGAAATCATATCTCGTATGGTTTCATCAATCCAGTAGCTCTACTGTTCTAGAATATCAAGTTGTTGTAGGGGATCAGTTTGTTGTTCCATCATATTCAAA
GGTATCTTTGTTTCAGCAGCCAACAAATCAAGATAGTGATGAGGAGCTGGAATATGCAGACAATAGCAGTGGCATTGTAGAATGTAGTTATGAAGGGAGCAATGACGATA
TTTATGGTGGTGGCTATGGAGGTGGTGGTTGTGGTGCTTGCTTTAAGTGTGGTGAAGGTCCGCAAGGTAGGCTTTTGTACTTCCTTGCTTGGAGTGTCCTCTTAGATTCT
TTCTCATCTCTGCAGTTCCCTTCCCCCATCCTCCTTTGTTCAATTCGCTCTGGAAGGTTTATGGCTCCTGTCCTCCCTTGCTTGGAATAG

mRNA sequence

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Protein sequence

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MDLMKSYLVWFHQSSSSTVLEYQVVVGDQFVVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVECSYEGSNDDIYGGGYGGGGCGACFKCGEGPQGRLLYFLAWSVLLDS
FSSLQFPSPILLCSIRSGRFMAPVLPCLE

Lag0006684 (gene) of Sponge gourd (AG-4) v1 genome