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Lag0006699 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006699
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:45049594..45050007
RNA-Seq ExpressionLag0006699
SyntenyLag0006699
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO67823.1 reverse transcriptase [Corchorus capsularis]1.4e-0734.17Show/hide
Query:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAG
        GQ+R +  +  S    V+ +E +AI  GL +A+ N +++L + SDCL  I  + +      D A +I +I+    SF    F HV RN NVLAH +A+  
Subjt:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAG

Query:  LYY-TPIVWYSNYPDWMVKL
        +      VWY   P ++V L
Subjt:  LYY-TPIVWYSNYPDWMVKL

XP_042954689.1 uncharacterized protein LOC122291107 [Carya illinoinensis]3.8e-0832.09Show/hide
Query:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAG
        G++ +A  +     + V   E VA+L GL++  Q  V ++ + +DCL L++ L +   C+ D A ++ DI+ L   FQ +K  HVNR  N++A+ LAR  
Subjt:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAG

Query:  LYYTPI-VWYS------NYPDWMVKLAHCEQQFF
             I +W+       N   W+ KLA C+   F
Subjt:  LYYTPI-VWYS------NYPDWMVKLAHCEQQFF

XP_042962672.1 uncharacterized protein LOC122296942 [Carya illinoinensis]3.4e-0933.08Show/hide
Query:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELAR-A
        G++ +A  +     +S    E VA+L GL++  Q  V ++ + +DCL L++ L +   C+ D A ++ DI  L   FQ ++  HVNR  N++AH LAR A
Subjt:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELAR-A

Query:  GLYYTPIVWYSNYPD------WMVKLAHCE
         L     +W+   P       W+ KLA C+
Subjt:  GLYYTPIVWYSNYPD------WMVKLAHCE

XP_042964568.1 uncharacterized protein LOC122298775 [Carya illinoinensis]1.3e-0832.31Show/hide
Query:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELAR-A
        G++ +A  +     +S    + VA+L GL++  Q  V ++ + +DCL L++ L +   C+ D A ++ DI  L   FQ ++  HVNR  N++AH LAR A
Subjt:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELAR-A

Query:  GLYYTPIVWYSNYPD------WMVKLAHCE
         L     +W+   P       W+ KLA C+
Subjt:  GLYYTPIVWYSNYPD------WMVKLAHCE

XP_042969199.1 uncharacterized protein LOC122301911 [Carya illinoinensis]3.8e-0835.45Show/hide
Query:  ETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELAR-AGLYYTPIVWYSNYPD-----
        E +A+L GL++  Q  V +L + +DCL L++ L +   C+ D A ++ DI  L  +FQ +K  HVNR  N++AH LAR   L     +W+   P      
Subjt:  ETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELAR-AGLYYTPIVWYSNYPD-----

Query:  -WMVKLAHCE
         W+ +LA C+
Subjt:  -WMVKLAHCE

TrEMBL top hitse value%identityAlignment
A0A1R3HC77 Reverse transcriptase6.9e-0834.17Show/hide
Query:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAG
        GQ+R +  +  S    V+ +E +AI  GL +A+ N +++L + SDCL  I  + +      D A +I +I+    SF    F HV RN NVLAH +A+  
Subjt:  GQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAG

Query:  LYY-TPIVWYSNYPDWMVKL
        +      VWY   P ++V L
Subjt:  LYY-TPIVWYSNYPDWMVKL

A0A2I4FVF0 uncharacterized protein LOC1090023666.5e-0634.02Show/hide
Query:  ETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAGLYYTPIV-WYSNYPDWM
        E  A+L GL+   Q  V +L + +DCL L++ L      + D A ++ DI  +   FQ ++  HVNR  N++AH+LAR       IV W+ + P ++
Subjt:  ETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAGLYYTPIV-WYSNYPDWM

A0A2N9F5W1 Reverse transcriptase domain-containing protein1.1e-0530.77Show/hide
Query:  QESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELAR--AGLYYTPI
        Q  S    +  AE +A    L++A  + ++ + +  D L +I  L   E C+     +I DI+HL  SFQ + + HV R  N  AH LAR    L+   +
Subjt:  QESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELAR--AGLYYTPI

Query:  VWYSNYPDWMVKLAHCE
        VW  + PD++  +   E
Subjt:  VWYSNYPDWMVKLAHCE

A0A2N9J6Y2 Uncharacterized protein1.3e-0633.02Show/hide
Query:  AETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAGLYYTP--IVWYSNYPDWMV
        AE +A    L++A    ++ + +  D L +I+ L   ERC+     +IWDI+HL  SFQ + + HV R  N  AH LAR  L  +   +VW  + P ++ 
Subjt:  AETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAGLYYTP--IVWYSNYPDWMV

Query:  KLAHCE
         +   E
Subjt:  KLAHCE

Q9SZ87 RNA-directed DNA polymerase-like protein1.9e-0536.63Show/hide
Query:  QLRLALKQESSTFT-SVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAG
        ++++   Q SS+F  S L AET+A+   L  A    V++L +FSDC  LIS L+ + + +V+   ++ DI  L  SF H+ F+ + R  NV+A  LA++ 
Subjt:  QLRLALKQESSTFT-SVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAG

Query:  L
        L
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAGCTGCGATTAGCATTAAAACAGGAGTCGTCTACATTTACTAGTGTTTTGTGTGCAGAGACTGTGGCGATCCTTGAGGGTCTAAAGATTGCACGTCAAAATGA
TGTTCAAAGATTGACCATTTTCTCTGATTGCCTAGCATTGATTTCAATTCTTATGCAGACGGAGCGGTGTGTGGTGGATTGTGCCACTGTCATTTGGGATATCGAACATT
TGCACGGTTCGTTCCAACATATTAAATTTTATCATGTAAATCGCAATTTCAATGTATTAGCTCATGAATTAGCCCGTGCGGGGTTGTATTATACACCAATTGTGTGGTAT
TCAAACTATCCGGATTGGATGGTAAAACTTGCTCATTGTGAGCAGCAGTTCTTTGTATCCCCTAGGGGAGCTCCCTCGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAGCTGCGATTAGCATTAAAACAGGAGTCGTCTACATTTACTAGTGTTTTGTGTGCAGAGACTGTGGCGATCCTTGAGGGTCTAAAGATTGCACGTCAAAATGA
TGTTCAAAGATTGACCATTTTCTCTGATTGCCTAGCATTGATTTCAATTCTTATGCAGACGGAGCGGTGTGTGGTGGATTGTGCCACTGTCATTTGGGATATCGAACATT
TGCACGGTTCGTTCCAACATATTAAATTTTATCATGTAAATCGCAATTTCAATGTATTAGCTCATGAATTAGCCCGTGCGGGGTTGTATTATACACCAATTGTGTGGTAT
TCAAACTATCCGGATTGGATGGTAAAACTTGCTCATTGTGAGCAGCAGTTCTTTGTATCCCCTAGGGGAGCTCCCTCGTTTTAA
Protein sequenceShow/hide protein sequence
MGQLRLALKQESSTFTSVLCAETVAILEGLKIARQNDVQRLTIFSDCLALISILMQTERCVVDCATVIWDIEHLHGSFQHIKFYHVNRNFNVLAHELARAGLYYTPIVWY
SNYPDWMVKLAHCEQQFFVSPRGAPSF