; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006736 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006736
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr6:45407647..45410760
RNA-Seq ExpressionLag0006736
SyntenyLag0006736
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR013947 - Mediator complex, subunit Med14
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146110.1 uncharacterized protein LOC111015405 [Momordica charantia]4.5e-4659.12Show/hide
Query:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA
        S +EV  +LPSG+ F FKG     P+ VSALKAR L+Q+GAW YLA++VD SK  P + SV ++R++ DVFP D PGLPP RE  F  DL  GT  +SKA
Subjt:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA

Query:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        PY+ AP EL ELK QLE+LL+K FI  +V  WG PVLF+KKKDGSMRLC++YR+LNK++
Subjt:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

XP_022156328.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]1.6e-4358.49Show/hide
Query:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA
        S KEV   L SGQ F FKG K   P+VVSALKA +L+Q G W YLAS+VD  K  P +  V ++ ++ DVFP+D PGLPP RE  F  +LL GT  +S+A
Subjt:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA

Query:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        PY+ A  EL ELK+QLE+LL++ FI  +VS WG PVLF+KKKDGSMRLCI+YRELNK++
Subjt:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

XP_022156985.1 uncharacterized protein LOC111023814 [Momordica charantia]6.3e-4861.78Show/hide
Query:  KEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREY-IFADLLHGTTSLSKAPY
        +EV  +LPSGQ+F FKG   E PKVVSALKAR L+QHGAW YL S+VDTSK +P + SV +  ++ DVFP+D PGLPP RE   + DL  GTT +S+APY
Subjt:  KEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREY-IFADLLHGTTSLSKAPY

Query:  QRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        + AP EL ELKVQLE+LL+K FI  +VS WG  VLF+KKKDGSMR+C++Y+ELNK++
Subjt:  QRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

XP_022156992.1 uncharacterized protein LOC111023821 [Momordica charantia]4.5e-4659.75Show/hide
Query:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA
        S KE   +LPS Q F FKG K   P+VVSALKA H +Q GAW YLAS+VD  K  P + +V ++ ++ DVFP+D PGLPP+RE  F  +LL GT  +SKA
Subjt:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA

Query:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        PY+ AP EL ELK+QLE+LL+K FI  +VS WG PVLF+KKKDG MRLCI+YRELNK++
Subjt:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]2.5e-4458.49Show/hide
Query:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA
        S +EV  +LPSG+ F FKG     P+ VSALKAR L+ +GAW YLAS+VD S   P + S  +++ ++DVFP+D  GLPP RE  F  DLL GT  +SKA
Subjt:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA

Query:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        P + APVEL ELK QLE+LL+K FI  +VS WG PVLF+KKKDGSMRLC++YRELNK++
Subjt:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

TrEMBL top hitse value%identityAlignment
A0A6J1CWD0 uncharacterized protein LOC1110154052.2e-4659.12Show/hide
Query:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA
        S +EV  +LPSG+ F FKG     P+ VSALKAR L+Q+GAW YLA++VD SK  P + SV ++R++ DVFP D PGLPP RE  F  DL  GT  +SKA
Subjt:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA

Query:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        PY+ AP EL ELK QLE+LL+K FI  +V  WG PVLF+KKKDGSMRLC++YR+LNK++
Subjt:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

A0A6J1DQB9 Reverse transcriptase7.7e-4458.49Show/hide
Query:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA
        S KEV   L SGQ F FKG K   P+VVSALKA +L+Q G W YLAS+VD  K  P +  V ++ ++ DVFP+D PGLPP RE  F  +LL GT  +S+A
Subjt:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA

Query:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        PY+ A  EL ELK+QLE+LL++ FI  +VS WG PVLF+KKKDGSMRLCI+YRELNK++
Subjt:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

A0A6J1DRW8 uncharacterized protein LOC1110238143.0e-4861.78Show/hide
Query:  KEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREY-IFADLLHGTTSLSKAPY
        +EV  +LPSGQ+F FKG   E PKVVSALKAR L+QHGAW YL S+VDTSK +P + SV +  ++ DVFP+D PGLPP RE   + DL  GTT +S+APY
Subjt:  KEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREY-IFADLLHGTTSLSKAPY

Query:  QRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        + AP EL ELKVQLE+LL+K FI  +VS WG  VLF+KKKDGSMR+C++Y+ELNK++
Subjt:  QRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

A0A6J1DTE5 uncharacterized protein LOC1110238212.2e-4659.75Show/hide
Query:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA
        S KE   +LPS Q F FKG K   P+VVSALKA H +Q GAW YLAS+VD  K  P + +V ++ ++ DVFP+D PGLPP+RE  F  +LL GT  +SKA
Subjt:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA

Query:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        PY+ AP EL ELK+QLE+LL+K FI  +VS WG PVLF+KKKDG MRLCI+YRELNK++
Subjt:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

A0A6J1DYU5 uncharacterized protein LOC1110255171.2e-4458.49Show/hide
Query:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA
        S +EV  +LPSG+ F FKG     P+ VSALKAR L+ +GAW YLAS+VD S   P + S  +++ ++DVFP+D  GLPP RE  F  DLL GT  +SKA
Subjt:  SMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFA-DLLHGTTSLSKA

Query:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS
        P + APVEL ELK QLE+LL+K FI  +VS WG PVLF+KKKDGSMRLC++YRELNK++
Subjt:  PYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKIS

SwissProt top hitse value%identityAlignment
Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.1e-0531.91Show/hide
Query:  IIRDYADVFPKDFPGLPPTREYIFADLLHGTTSLSKAPYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNK
        IIR+     P D   +P   +    ++  G       PY        E+   ++KLL+  FI  + S    PV+ + KKDG+ RLC++YR LNK
Subjt:  IIRDYADVFPKDFPGLPPTREYIFADLLHGTTSLSKAPYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNK

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.1e-0531.91Show/hide
Query:  IIRDYADVFPKDFPGLPPTREYIFADLLHGTTSLSKAPYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNK
        IIR+     P D   +P   +    ++  G       PY        E+   ++KLL+  FI  + S    PV+ + KKDG+ RLC++YR LNK
Subjt:  IIRDYADVFPKDFPGLPPTREYIFADLLHGTTSLSKAPYQRAPVELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNK

Q9SR02 Mediator of RNA polymerase II transcription subunit 144.9e-1969.57Show/hide
Query:  ADLGQQTVDFSALVSRVADDSFLSLKQLVDKSKSDDQSDDQKKLNILKFLFKTEQRMLRLYALAKWCQQ
        A+LGQQTVDFSALV R A++SFLS K+LVDKSKS + SD +KK+++LK++ KT+QRMLRL ALAKWC+Q
Subjt:  ADLGQQTVDFSALVSRVADDSFLSLKQLVDKSKSDDQSDDQKKLNILKFLFKTEQRMLRLYALAKWCQQ

Arabidopsis top hitse value%identityAlignment
AT3G04740.1 RNA polymerase II transcription mediators3.5e-2069.57Show/hide
Query:  ADLGQQTVDFSALVSRVADDSFLSLKQLVDKSKSDDQSDDQKKLNILKFLFKTEQRMLRLYALAKWCQQ
        A+LGQQTVDFSALV R A++SFLS K+LVDKSKS + SD +KK+++LK++ KT+QRMLRL ALAKWC+Q
Subjt:  ADLGQQTVDFSALVSRVADDSFLSLKQLVDKSKSDDQSDDQKKLNILKFLFKTEQRMLRLYALAKWCQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAAGAAAGAAGTATGAAAGAAGTATGTCTCAAGTTGCCCTCAGGACAAAAGTTTAGGTTCAAAGGATCGAAGAATGAGAGTCCTAAGGTAGTCTCTGCATTGAA
AGCTAGGCACCTGGTACAACATGGTGCTTGGACGTATCTGGCTAGCATGGTGGATACCAGCAAGGAATCTCCTAAGTTGGGCTCGGTGCCCATAATAAGGGATTATGCAG
ATGTGTTCCCAAAAGATTTCCCTGGTTTACCTCCAACACGAGAATATATTTTTGCAGATCTTCTGCATGGTACGACCTCGTTGTCCAAAGCTCCCTACCAAAGGGCTCCA
GTTGAGTTGAATGAGCTCAAGGTGCAATTGGAGAAACTCCTTGAGAAATGGTTTATTGAGGGCAACGTTTCTCTTTGGGGTGTACCAGTTTTGTTCATTAAAAAGAAAGA
TGGATCGATGAGGCTCTGCATTAACTATCGAGAATTGAATAAGATCTCCTTTTTCCTCCATCCCCACTCGTTGGGACCCTGGTTCGCCCTAATCATGGCGGCCGACTTAG
GGCAACAGACCGTCGACTTCTCTGCCCTCGTTTCCCGCGTTGCTGATGACTCCTTCCTCTCCCTCAAACAGCTCGTCGATAAGTCCAAATCCGACGACCAATCCGACGAC
CAGAAGAAGCTCAACATCCTCAAGTTCCTCTTCAAGACCGAGCAGAGGATGCTCCGCCTTTATGCCCTTGCCAAGTGGTGCCAACAGAATGGGCATTTGTTTAGCAGTTT
GTATCTCACGGGAGTAGGAAAGCTAGGTGAGGCCATTGGGAATTGGACATCCCACAATCAGGAGGTTATTGTTCTTAAAATTGACTCTGAAAGGCTCATGATTGTGTTGA
TTAGCTTTCTGGACAAGGTTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCAAGAAAGAAGTATGAAAGAAGTATGTCTCAAGTTGCCCTCAGGACAAAAGTTTAGGTTCAAAGGATCGAAGAATGAGAGTCCTAAGGTAGTCTCTGCATTGAA
AGCTAGGCACCTGGTACAACATGGTGCTTGGACGTATCTGGCTAGCATGGTGGATACCAGCAAGGAATCTCCTAAGTTGGGCTCGGTGCCCATAATAAGGGATTATGCAG
ATGTGTTCCCAAAAGATTTCCCTGGTTTACCTCCAACACGAGAATATATTTTTGCAGATCTTCTGCATGGTACGACCTCGTTGTCCAAAGCTCCCTACCAAAGGGCTCCA
GTTGAGTTGAATGAGCTCAAGGTGCAATTGGAGAAACTCCTTGAGAAATGGTTTATTGAGGGCAACGTTTCTCTTTGGGGTGTACCAGTTTTGTTCATTAAAAAGAAAGA
TGGATCGATGAGGCTCTGCATTAACTATCGAGAATTGAATAAGATCTCCTTTTTCCTCCATCCCCACTCGTTGGGACCCTGGTTCGCCCTAATCATGGCGGCCGACTTAG
GGCAACAGACCGTCGACTTCTCTGCCCTCGTTTCCCGCGTTGCTGATGACTCCTTCCTCTCCCTCAAACAGCTCGTCGATAAGTCCAAATCCGACGACCAATCCGACGAC
CAGAAGAAGCTCAACATCCTCAAGTTCCTCTTCAAGACCGAGCAGAGGATGCTCCGCCTTTATGCCCTTGCCAAGTGGTGCCAACAGAATGGGCATTTGTTTAGCAGTTT
GTATCTCACGGGAGTAGGAAAGCTAGGTGAGGCCATTGGGAATTGGACATCCCACAATCAGGAGGTTATTGTTCTTAAAATTGACTCTGAAAGGCTCATGATTGTGTTGA
TTAGCTTTCTGGACAAGGTTCTCTAG
Protein sequenceShow/hide protein sequence
MFQERSMKEVCLKLPSGQKFRFKGSKNESPKVVSALKARHLVQHGAWTYLASMVDTSKESPKLGSVPIIRDYADVFPKDFPGLPPTREYIFADLLHGTTSLSKAPYQRAP
VELNELKVQLEKLLEKWFIEGNVSLWGVPVLFIKKKDGSMRLCINYRELNKISFFLHPHSLGPWFALIMAADLGQQTVDFSALVSRVADDSFLSLKQLVDKSKSDDQSDD
QKKLNILKFLFKTEQRMLRLYALAKWCQQNGHLFSSLYLTGVGKLGEAIGNWTSHNQEVIVLKIDSERLMIVLISFLDKVL