; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006774 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006774
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr6:45713635..45714555
RNA-Seq ExpressionLag0006774
SyntenyLag0006774
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037445.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.4e-9756.72Show/hide
Query:  MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKR
        M +F DF+ KGV+N+N+N TYI+LIPK+ + +   D+RPISLTT++YK+IAK L+ RLK +LP+T++ NQLAFVK+RQITD IL+ANEA+D+WK  KK +
Subjt:  MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKR

Query:  DIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSL
          ++KLD+EKAFD ++W+FID V+++K +   WR+WI+ CIS V+YSVI+NGRP+ +I A+RG+RQGDPLSPF+FV+AMDYLSRLL+  E  G I GVSL
Subjt:  DIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSL

Query:  GPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILE
          S+ +I H++FADDILLF++D++ +L NL   + +FE ASGL INL KSA+  +N+  +R +E A  WG +  SLP+SYLG PLGG P S  FW  + +
Subjt:  GPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILE

Query:  KIEKK
        KI+KK
Subjt:  KIEKK

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.9e-9859.41Show/hide
Query:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI
        +F DF    ++N+ VN T I+LI K+  C   +D+RPISLTTA+YKLIAK LA+RLK +LP+T++E+Q+AFVK RQIT+ IL+ANEA+D+W+ SKK+R  
Subjt:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI

Query:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP
        +IKLD+EKAFDK++W FID V+ +K YS+KWR+ I +CIS+V YS++INGRP+ +I  SRGIRQGDPLSPFIFVLAMDYLSRLLN   +K  I GV   P
Subjt:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP

Query:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI
        +  ++ H++FADDIL+FV+D + Y++NL  I+ +FE ASGLNINLSKS I  IN+P  R + IA SWG +   LP SYLG PLGG+PSS +FW  +L+KI
Subjt:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI

Query:  EKK
        +KK
Subjt:  EKK

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.3e-9759.74Show/hide
Query:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI
        +F DF     +N+ VN T I+LI K+ +C  VSD+RPISLTTA+YKLIAKVLA+RLK +LP T++E Q+AFVK RQIT+ IL+ANEA+D+W+ +KK+R  
Subjt:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI

Query:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP
        +IKLD+EKAFDK++W FID ++ +K YS KWR  I +CIS+V YS++INGRP+ +I  +RGIRQGDPLSPFIFVLAMDYLS LL    EKG I GV+ GP
Subjt:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP

Query:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI
        +  ++ H++FADDIL+FV+D   Y++NL  I+ +FE ASGLNINLSKS I  IN+P  R   I  SWG +   LP +YLG PLGGKPSS +FW  IL+KI
Subjt:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI

Query:  EKK
        +KK
Subjt:  EKK

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-9958.36Show/hide
Query:  MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKR
        M +F DF+ KGV+N+N+N TYI+LIPK+   +   D+RPISLTT++YK+IAK L+ RLK SLPNT++ENQLAFVK+RQITD IL+ANEAVD+WK  KK +
Subjt:  MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKR

Query:  DIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSL
          ++KLD+EKAFD ++W+FID V+++K +   WR+WI+ CIS V+YS+I+NGRP+ +I A+RG+RQGDPLSPF+FV+AMDYLSRLL+  E  G I GVS 
Subjt:  DIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSL

Query:  GPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILE
          S+ +I H++FADDILLF++D++ +LNNL   + +FE ASGL INL KSA+  +N+ + R +E A  WG + QSLP+SYLG PLGG P S  FW  + E
Subjt:  GPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILE

Query:  KIEKK
        KI+KK
Subjt:  KIEKK

TYJ99326.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-9960.07Show/hide
Query:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI
        +F DF     +N+ VN T I+ I K+ +C  V+D+RPISLTTA+YKLIAKVLA+RLK +LP+T++E+Q+AFVK RQIT+ IL+ANEA+D W+ +KK+R  
Subjt:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI

Query:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP
        +IKLD+EKAFDK++W FID ++ +K YS+KWR+ I +CIS+V YS++INGRP+ +I  SRGIRQGDPLSPFIFVLAMDYLSRLLN   +KG I GV+ GP
Subjt:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP

Query:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI
        +  ++ H++FADDIL+FV+D + Y++NL  I+ +FE ASGLNINLSKS I  IN+P  R   IA SWG +   LP SYLG PLGGKPSS +FW  +L+KI
Subjt:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI

Query:  EKK
        +KK
Subjt:  EKK

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.9e-9859.41Show/hide
Query:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI
        +F DF    ++N+ VN T I+LI K+  C   +D+RPISLTTA+YKLIAK LA+RLK +LP+T++E+Q+AFVK RQIT+ IL+ANEA+D+W+ SKK+R  
Subjt:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI

Query:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP
        +IKLD+EKAFDK++W FID V+ +K YS+KWR+ I +CIS+V YS++INGRP+ +I  SRGIRQGDPLSPFIFVLAMDYLSRLLN   +K  I GV   P
Subjt:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP

Query:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI
        +  ++ H++FADDIL+FV+D + Y++NL  I+ +FE ASGLNINLSKS I  IN+P  R + IA SWG +   LP SYLG PLGG+PSS +FW  +L+KI
Subjt:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI

Query:  EKK
        +KK
Subjt:  EKK

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.6e-9759.74Show/hide
Query:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI
        +F DF     +N+ VN T I+LI K+ +C  VSD+RPISLTTA+YKLIAKVLA+RLK +LP T++E Q+AFVK RQIT+ IL+ANEA+D+W+ +KK+R  
Subjt:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI

Query:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP
        +IKLD+EKAFDK++W FID ++ +K YS KWR  I +CIS+V YS++INGRP+ +I  +RGIRQGDPLSPFIFVLAMDYLS LL    EKG I GV+ GP
Subjt:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP

Query:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI
        +  ++ H++FADDIL+FV+D   Y++NL  I+ +FE ASGLNINLSKS I  IN+P  R   I  SWG +   LP +YLG PLGGKPSS +FW  IL+KI
Subjt:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI

Query:  EKK
        +KK
Subjt:  EKK

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein1.0e-9958.36Show/hide
Query:  MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKR
        M +F DF+ KGV+N+N+N TYI+LIPK+   +   D+RPISLTT++YK+IAK L+ RLK SLPNT++ENQLAFVK+RQITD IL+ANEAVD+WK  KK +
Subjt:  MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKR

Query:  DIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSL
          ++KLD+EKAFD ++W+FID V+++K +   WR+WI+ CIS V+YS+I+NGRP+ +I A+RG+RQGDPLSPF+FV+AMDYLSRLL+  E  G I GVS 
Subjt:  DIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSL

Query:  GPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILE
          S+ +I H++FADDILLF++D++ +LNNL   + +FE ASGL INL KSA+  +N+ + R +E A  WG + QSLP+SYLG PLGG P S  FW  + E
Subjt:  GPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILE

Query:  KIEKK
        KI+KK
Subjt:  KIEKK

A0A5D3BJP3 LINE-1 retrotransposable element ORF2 protein1.0e-9960.07Show/hide
Query:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI
        +F DF     +N+ VN T I+ I K+ +C  V+D+RPISLTTA+YKLIAKVLA+RLK +LP+T++E+Q+AFVK RQIT+ IL+ANEA+D W+ +KK+R  
Subjt:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI

Query:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP
        +IKLD+EKAFDK++W FID ++ +K YS+KWR+ I +CIS+V YS++INGRP+ +I  SRGIRQGDPLSPFIFVLAMDYLSRLLN   +KG I GV+ GP
Subjt:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP

Query:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI
        +  ++ H++FADDIL+FV+D + Y++NL  I+ +FE ASGLNINLSKS I  IN+P  R   IA SWG +   LP SYLG PLGGKPSS +FW  +L+KI
Subjt:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKI

Query:  EKK
        +KK
Subjt:  EKK

A0A5D3BUZ3 LINE-1 retrotransposable element ORF2 protein2.1e-9756.72Show/hide
Query:  MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKR
        M +F DF+ KGV+N+N+N TYI+LIPK+ + +   D+RPISLTT++YK+IAK L+ RLK +LP+T++ NQLAFVK+RQITD IL+ANEA+D+WK  KK +
Subjt:  MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKR

Query:  DIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSL
          ++KLD+EKAFD ++W+FID V+++K +   WR+WI+ CIS V+YSVI+NGRP+ +I A+RG+RQGDPLSPF+FV+AMDYLSRLL+  E  G I GVSL
Subjt:  DIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSL

Query:  GPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILE
          S+ +I H++FADDILLF++D++ +L NL   + +FE ASGL INL KSA+  +N+  +R +E A  WG +  SLP+SYLG PLGG P S  FW  + +
Subjt:  GPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILE

Query:  KIEKK
        KI+KK
Subjt:  KIEKK

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein9.9e-2828.16Show/hide
Query:  MTVFHDFFRKGVVNRNVNGTYISLIPKRA-SCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKK
        + +F    ++G++  +     I LIPK     TK  ++RPISL     K++ K+LA R++  +   +  +Q+ F+   Q    I  +   + +   +K K
Subjt:  MTVFHDFFRKGVVNRNVNGTYISLIPKRA-SCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKK

Query:  RDIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVS
          ++I +D EKAFDKI   F+   + + G    + + I+A     + ++I+NG+  E      G RQG PLSP +F + ++ L+R +   +E   I G+ 
Subjt:  RDIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVS

Query:  LGPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPL--GGKPSSESFWHP
        LG     +   +FADD+++++++      NL K+I  F   SG  IN+ KS     N       +I G       S  I YLG  L    K   +  + P
Subjt:  LGPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPL--GGKPSSESFWHP

Query:  ILEKIEKKT
        +L++I++ T
Subjt:  ILEKIEKKT

P08548 LINE-1 reverse transcriptase homolog3.7e-2227.89Show/hide
Query:  MTVFHDFFRKGVVNRNVNGTYISLIPKRA-SCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKK
        + +F +  ++G++        I+LIPK     T+  +YRPISL     K++ K+L  R++  +   +  +Q+ F+   Q    I  +   + +    K K
Subjt:  MTVFHDFFRKGVVNRNVNGTYISLIPKRA-SCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKK

Query:  RDIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVS
          +++ +D EKAFD I   F+   +++ G    + + I+A  S  + ++I+NG   +      G RQG PLSP +F + M+ L+    A  E+  I G+ 
Subjt:  RDIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVS

Query:  LGPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKS
        +G  S  I   +FADD+++++++       L ++IK +   SG  IN  KS
Subjt:  LGPSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKS

P11369 LINE-1 retrotransposable element ORF2 protein1.2e-2530.52Show/hide
Query:  VFHDFFRKGVVNRNVNGTYISLIPK-RASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRD
        +FH    +G +  +     I+LIPK +   TK+ ++RPISL     K++ K+LA R++  +   +  +Q+ F+   Q    I  +   + Y    K K  
Subjt:  VFHDFFRKGVVNRNVNGTYISLIPK-RASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRD

Query:  IMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLG
        ++I LD EKAFDKI   F+  V+++ G    +   IKA  S    ++ +NG   E I    G RQG PLSP++F + ++ L+R +   +E   I G+ +G
Subjt:  IMIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLG

Query:  PSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKS
             I   + ADD+++++ D  +    L  +I  F    G  IN +KS
Subjt:  PSSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKS

P14381 Transposon TX1 uncharacterized 149 kDa protein1.1e-1826.1Show/hide
Query:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI
        V  + F+KG +  +     +SL+PK+     + ++RP+SL +  YK++AK ++ RLK  L   +  +Q   V  R I D + L  + + + + +      
Subjt:  VFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDI

Query:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP
         + LD EKAFD++  +++   +Q   +  ++  ++K   ++    V IN      +   RG+RQG PLS  ++ LA++    LL     +  + G+ L  
Subjt:  MIKLDLEKAFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGP

Query:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSW-GCAHQSLPISYLGAPLGGK--PSSESF
            ++   +ADD++L  QD    L    +  +V+  AS   IN SKS  +G+     ++  +  ++   + +S  I YLG  L  +  P S++F
Subjt:  SSPSIMHLMFADDILLFVQDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSW-GCAHQSLPISYLGAPLGGK--PSSESF

Q03274 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)2.7e-1728.82Show/hide
Query:  SLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDIMIKLDLEKAFDKISWEFIDV
        +LIPK       S++RPI++ +AL +L+ ++LA+RL+ ++    A+   A +    +  ++L   +     +  ++K   ++ LD+ KAFD +S   I  
Subjt:  SLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDIMIKLDLEKAFDKISWEFIDV

Query:  VMQQKGYSKKWRQWIKACISTVSYSVIIN-GRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGPSSPSIMHLMFADDILLFVQ
         +Q+ G  +    +I   +S  + ++ +  G    KI   RG++QGDPLSPF+F   +D L   L +T   G   G         I  L FADD+LL   
Subjt:  VMQQKGYSKKWRQWIKACISTVSYSVIIN-GRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGPSSPSIMHLMFADDILLFVQ

Query:  DDNSYLNNLFKIIKVFEIASGLNINLSKS
        +D      L  +   F +  G+++N  KS
Subjt:  DDNSYLNNLFKIIKVFEIASGLNINLSKS

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases1.4e-0835.8Show/hide
Query:  LAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSK-KKRDIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKW
        + ERLKP + N +   Q +F+  R  TD I+   EAV   +  K  K  +++KLDLEKA+D+I W++++  +   G+ + W
Subjt:  LAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSK-KKRDIMIKLDLEKAFDKISWEFIDVVMQQKGYSKKW

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)3.8e-1449.25Show/hide
Query:  IINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGPSSPSIMHLMFADD
        IING P+  +  SRG+RQGDPLSP++F+L  + LS L    +E+G + G+ +  +SP I HL+FADD
Subjt:  IINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGPSSPSIMHLMFADD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTGTTCCATGATTTTTTCAGAAAAGGTGTAGTGAACCGCAATGTTAATGGGACCTATATTTCTCTAATTCCAAAGAGGGCTAGCTGCACCAAAGTCTCGGACTA
CAGGCCCATCAGCCTTACTACTGCCTTATACAAACTGATTGCAAAAGTTCTAGCTGAGAGGTTAAAACCATCTCTCCCAAATACTGTTGCCGAAAACCAATTGGCCTTCG
TCAAAGACAGGCAAATTACTGATGTTATCCTCTTGGCAAACGAAGCAGTGGATTACTGGAAATGCTCCAAAAAAAAAAGAGACATTATGATTAAGCTTGATTTAGAGAAG
GCCTTTGATAAGATTAGCTGGGAATTTATAGATGTGGTGATGCAACAAAAAGGCTACTCTAAGAAATGGAGACAATGGATTAAAGCGTGCATATCTACAGTCAGCTACTC
AGTGATTATTAACGGCAGACCGAAAGAGAAGATTATAGCTTCAAGAGGCATTCGTCAAGGAGACCCGCTCTCCCCTTTCATTTTTGTCCTTGCGATGGACTACTTGAGCA
GACTGCTTAATGCTACAGAGGAAAAAGGCCTTATTGCTGGTGTCAGCTTAGGCCCGTCCAGTCCTTCTATTATGCACCTAATGTTCGCTGATGATATATTGCTTTTCGTG
CAGGATGATAATTCCTATTTGAACAATCTTTTCAAAATTATAAAGGTCTTTGAGATTGCCTCGGGTCTAAACATAAATCTATCTAAGTCTGCCATCACAGGTATCAACAT
ACCAGACCATCGTATTCAGGAAATTGCTGGTTCTTGGGGTTGCGCTCATCAAAGCCTTCCCATCTCCTATTTAGGTGCTCCCCTTGGTGGAAAACCCTCCTCCGAGTCTT
TTTGGCATCCAATTTTGGAGAAGATTGAGAAAAAAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGTGTTCCATGATTTTTTCAGAAAAGGTGTAGTGAACCGCAATGTTAATGGGACCTATATTTCTCTAATTCCAAAGAGGGCTAGCTGCACCAAAGTCTCGGACTA
CAGGCCCATCAGCCTTACTACTGCCTTATACAAACTGATTGCAAAAGTTCTAGCTGAGAGGTTAAAACCATCTCTCCCAAATACTGTTGCCGAAAACCAATTGGCCTTCG
TCAAAGACAGGCAAATTACTGATGTTATCCTCTTGGCAAACGAAGCAGTGGATTACTGGAAATGCTCCAAAAAAAAAAGAGACATTATGATTAAGCTTGATTTAGAGAAG
GCCTTTGATAAGATTAGCTGGGAATTTATAGATGTGGTGATGCAACAAAAAGGCTACTCTAAGAAATGGAGACAATGGATTAAAGCGTGCATATCTACAGTCAGCTACTC
AGTGATTATTAACGGCAGACCGAAAGAGAAGATTATAGCTTCAAGAGGCATTCGTCAAGGAGACCCGCTCTCCCCTTTCATTTTTGTCCTTGCGATGGACTACTTGAGCA
GACTGCTTAATGCTACAGAGGAAAAAGGCCTTATTGCTGGTGTCAGCTTAGGCCCGTCCAGTCCTTCTATTATGCACCTAATGTTCGCTGATGATATATTGCTTTTCGTG
CAGGATGATAATTCCTATTTGAACAATCTTTTCAAAATTATAAAGGTCTTTGAGATTGCCTCGGGTCTAAACATAAATCTATCTAAGTCTGCCATCACAGGTATCAACAT
ACCAGACCATCGTATTCAGGAAATTGCTGGTTCTTGGGGTTGCGCTCATCAAAGCCTTCCCATCTCCTATTTAGGTGCTCCCCTTGGTGGAAAACCCTCCTCCGAGTCTT
TTTGGCATCCAATTTTGGAGAAGATTGAGAAAAAAACTTGA
Protein sequenceShow/hide protein sequence
MTVFHDFFRKGVVNRNVNGTYISLIPKRASCTKVSDYRPISLTTALYKLIAKVLAERLKPSLPNTVAENQLAFVKDRQITDVILLANEAVDYWKCSKKKRDIMIKLDLEK
AFDKISWEFIDVVMQQKGYSKKWRQWIKACISTVSYSVIINGRPKEKIIASRGIRQGDPLSPFIFVLAMDYLSRLLNATEEKGLIAGVSLGPSSPSIMHLMFADDILLFV
QDDNSYLNNLFKIIKVFEIASGLNINLSKSAITGINIPDHRIQEIAGSWGCAHQSLPISYLGAPLGGKPSSESFWHPILEKIEKKT