CuGenDBv2

Gene ID	Lag0006793
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	eukaryotic translation initiation factor 4B3-like
Genome location	chr6:45865594..45866057
RNA-Seq Expression	Lag0006793
Synteny	Lag0006793
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008447975.1 PREDICTED: eukaryotic translation initiation factor 4B3 [Cucumis melo]

8.3e-15

86.67

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Query:  MAATV-SPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT
        MAA V SPWGKPGA ALDSEEHEAQLLKE+E QQKQ ELSL FPSLNDALATK KKKGQT
Subjt:  MAATV-SPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT

XP_022135918.1 eukaryotic translation initiation factor 4B3-like [Momordica charantia]

1.8e-17

86.44

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Query:  MAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT
        MAA VSPWGKPGA ALDSEEHEAQLLKEE++QQKQ+EL L FPSLNDALATK KKKGQT
Subjt:  MAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT

XP_022989048.1 eukaryotic translation initiation factor 4B3-like [Cucurbita maxima]

3.7e-15

80.65

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Query:  MAATVSPWGKPGALALDSEEHEAQLLKEE---EQQQKQSELSLGFPSLNDALATKPKKKGQT
        M A  SPWGKPGA ALDSEEHEA+LLKEE   EQQQK++ELSL FPSLNDALATK KKKGQT
Subjt:  MAATVSPWGKPGALALDSEEHEAQLLKEE---EQQQKQSELSLGFPSLNDALATKPKKKGQT

XP_038887904.1 eukaryotic translation initiation factor 4B3-like isoform X1 [Benincasa hispida]

1.3e-15

86.44

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Query:  MAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT
        MAA VSPWGKPGA ALDSEEHEAQLLKE+E  QKQ+ELSL FPSLNDALATK KKKGQT
Subjt:  MAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT

XP_038887905.1 eukaryotic translation initiation factor 4B3-like isoform X2 [Benincasa hispida]

1.3e-15

86.44

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Query:  MAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT
        MAA VSPWGKPGA ALDSEEHEAQLLKE+E  QKQ+ELSL FPSLNDALATK KKKGQT
Subjt:  MAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BJA3 eukaryotic translation initiation factor 4B3

4.0e-15

86.67

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Query:  MAATV-SPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT
        MAA V SPWGKPGA ALDSEEHEAQLLKE+E QQKQ ELSL FPSLNDALATK KKKGQT
Subjt:  MAATV-SPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT

A0A5A7U3A1 Eukaryotic translation initiation factor 4B3

4.0e-15

86.67

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Query:  MAATV-SPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT
        MAA V SPWGKPGA ALDSEEHEAQLLKE+E QQKQ ELSL FPSLNDALATK KKKGQT
Subjt:  MAATV-SPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT

A0A6J1C673 eukaryotic translation initiation factor 4B3-like

8.7e-18

86.44

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Query:  MAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT
        MAA VSPWGKPGA ALDSEEHEAQLLKEE++QQKQ+EL L FPSLNDALATK KKKGQT
Subjt:  MAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQT

A0A6J1EKJ0 eukaryotic translation initiation factor 4B3 isoform X1

9.0e-15

75.38

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Query:  MAATVSPWGKPGALALDSEEHEAQLLKEE------EQQQKQSELSLGFPSLNDALATKPKKKGQT
        M A  SPWGKPGA ALDSEEHEA+LLKEE      +QQQK++ELSL FPSLNDALATK KKKGQT
Subjt:  MAATVSPWGKPGALALDSEEHEAQLLKEE------EQQQKQSELSLGFPSLNDALATKPKKKGQT

A0A6J1JP41 eukaryotic translation initiation factor 4B3-like

1.8e-15

80.65

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Query:  MAATVSPWGKPGALALDSEEHEAQLLKEE---EQQQKQSELSLGFPSLNDALATKPKKKGQT
        M A  SPWGKPGA ALDSEEHEA+LLKEE   EQQQK++ELSL FPSLNDALATK KKKGQT
Subjt:  MAATVSPWGKPGALALDSEEHEAQLLKEE---EQQQKQSELSLGFPSLNDALATKPKKKGQT

SwissProt top hits

e value

%identity

Alignment

Q9SZP8 Eukaryotic translation initiation factor 4B3

4.7e-05

52.46

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Query:  AATVSPWGKPGALALDSEEHEAQLLKEEE--QQQKQSELSLGFPSLNDALATK-PKKKGQT
        AA  S W KPGA AL++EEHEA+L ++     Q+  +E S  FPSL  A  TK  KKKGQT
Subjt:  AATVSPWGKPGALALDSEEHEAQLLKEEE--QQQKQSELSLGFPSLNDALATK-PKKKGQT

Arabidopsis top hits

e value

%identity

Alignment

AT4G38710.1 glycine-rich protein

3.4e-06

52.46

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Query:  AATVSPWGKPGALALDSEEHEAQLLKEEE--QQQKQSELSLGFPSLNDALATK-PKKKGQT
        AA  S W KPGA AL++EEHEA+L ++     Q+  +E S  FPSL  A  TK  KKKGQT
Subjt:  AATVSPWGKPGALALDSEEHEAQLLKEEE--QQQKQSELSLGFPSLNDALATK-PKKKGQT

AT4G38710.2 glycine-rich protein

3.4e-06

52.46

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Query:  AATVSPWGKPGALALDSEEHEAQLLKEEE--QQQKQSELSLGFPSLNDALATK-PKKKGQT
        AA  S W KPGA AL++EEHEA+L ++     Q+  +E S  FPSL  A  TK  KKKGQT
Subjt:  AATVSPWGKPGALALDSEEHEAQLLKEEE--QQQKQSELSLGFPSLNDALATK-PKKKGQT

Sequences

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CDS sequence

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ATGAAACAAACCATTTGCAACTCCGACCATCCATTTTGCTGCCGACCAACGCAAACCCCAATTCTCACAGAATCTCGGAGTAGAGCAACAATGGCGGCAACGGTTTCTCC
ATGGGGAAAACCAGGCGCTTTGGCCCTCGACTCCGAGGAACACGAAGCTCAACTCCTTAAAGAAGAGGAACAACAACAGAAACAATCAGAGCTCAGCTTGGGTTTTCCCT
CCCTCAACGACGCATTGGCCACCAAACCGAAGAAGAAAGGACAAACTTCTACAACAAAACCATAA

mRNA sequence

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Protein sequence

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MKQTICNSDHPFCCRPTQTPILTESRSRATMAATVSPWGKPGALALDSEEHEAQLLKEEEQQQKQSELSLGFPSLNDALATKPKKKGQTSTTKP

Lag0006793 (gene) of Sponge gourd (AG-4) v1 genome