; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006794 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006794
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionVQ domain-containing protein
Genome locationchr6:45872737..45873138
RNA-Seq ExpressionLag0006794
SyntenyLag0006794
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]2.6e-3062.07Show/hide
Query:  MEN-FRSLPNHLHHQKI----QAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD-DA-FHQSPQEFNDQVSYLPPSSTV--ASFDPN
        MEN   +LP   HH+K+      P+    + KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS D DA F QS Q+FN      PPSS+    SFDP 
Subjt:  MEN-FRSLPNHLHHQKI----QAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD-DA-FHQSPQEFNDQVSYLPPSSTV--ASFDPN

Query:  GCYGSVSGDVY--DPIGVG-EGRNWRGEMEGSFSGFQA-SYVDVW
         CYGS SGDV   D I  G EGR WRGEMEGSFSGFQA S V++W
Subjt:  GCYGSVSGDVY--DPIGVG-EGRNWRGEMEGSFSGFQA-SYVDVW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]1.5e-3065.49Show/hide
Query:  MENFRSLPNHLHHQKI-QAPSKATM--EVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPP--SSTVASFDPNGCYG
        MENF +LP++ HH+K+ Q  +KAT+  + KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS D    QS Q+FN  V Y PP  SS   SFDP  CYG
Subjt:  MENFRSLPNHLHHQKI-QAPSKATM--EVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPP--SSTVASFDPNGCYG

Query:  -SVSGDV-YDPIGVG-EGRNWRGEME-GSFSGFQA-SYVDVW
         S SGDV +D I  G EGR WRGEME GSFSGFQA S V++W
Subjt:  -SVSGDV-YDPIGVG-EGRNWRGEME-GSFSGFQA-SYVDVW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.9e-3967.91Show/hide
Query:  MENFRSLPNHLHHQKIQAPS-KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSG
        MEN +SLPNHL H+K++A + +ATM  KPIKVKYIS+PMMVKA+NE EFRAIVQKLTGQHSADDAF +SPQEFN   ++ PPSSTV SFD   CY  VS 
Subjt:  MENFRSLPNHLHHQKIQAPS-KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSG

Query:  DVYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR
        D YDPI V       GEM+ S  GFQASYVDVWR
Subjt:  DVYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]2.8e-4069.4Show/hide
Query:  MENFRSLPNHLHHQKIQAPS-KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSG
        MEN +SLPNHL H+K++A + +ATM  KPIKVKYIS+PMMVKANNE EFRAIVQKLTGQHSADDAF +SPQEFN   ++ PPSSTV SFD   CY  VS 
Subjt:  MENFRSLPNHLHHQKIQAPS-KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSG

Query:  DVYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR
        D YDPIGV       GEM+ S  GFQASYVDVWR
Subjt:  DVYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]2.7e-2769.44Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVA-SFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQ
        KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS  DAF QS ++FN QV Y PPSS  A SFDP  CY S SGDV          +W+GEMEGSFSGFQ
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVA-SFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFSGFQ

Query:  A-SYVDVW
        A S V+ W
Subjt:  A-SYVDVW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein7.4e-3165.49Show/hide
Query:  MENFRSLPNHLHHQKI-QAPSKATM--EVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPP--SSTVASFDPNGCYG
        MENF +LP++ HH+K+ Q  +KAT+  + KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS D    QS Q+FN  V Y PP  SS   SFDP  CYG
Subjt:  MENFRSLPNHLHHQKI-QAPSKATM--EVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPP--SSTVASFDPNGCYG

Query:  -SVSGDV-YDPIGVG-EGRNWRGEME-GSFSGFQA-SYVDVW
         S SGDV +D I  G EGR WRGEME GSFSGFQA S V++W
Subjt:  -SVSGDV-YDPIGVG-EGRNWRGEME-GSFSGFQA-SYVDVW

A0A5A7VDH6 VQ motif-containing protein1.3e-3062.07Show/hide
Query:  MEN-FRSLPNHLHHQKI----QAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD-DA-FHQSPQEFNDQVSYLPPSSTV--ASFDPN
        MEN   +LP   HH+K+      P+    + KPIKVKYIS+PMMVKANNESEFRAIVQKLTGQHS D DA F QS Q+FN      PPSS+    SFDP 
Subjt:  MEN-FRSLPNHLHHQKI----QAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSAD-DA-FHQSPQEFNDQVSYLPPSSTV--ASFDPN

Query:  GCYGSVSGDVY--DPIGVG-EGRNWRGEMEGSFSGFQA-SYVDVW
         CYGS SGDV   D I  G EGR WRGEMEGSFSGFQA S V++W
Subjt:  GCYGSVSGDVY--DPIGVG-EGRNWRGEMEGSFSGFQA-SYVDVW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like5.9e-2060Show/hide
Query:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSP----QEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFS
        KPIKVKYISNPMMVKAN+ESEFR IVQ+LTGQ+S DDAF +SP    +E  +   Y PP ST  S DP G YG VSG V +   +GEG   + EM+G FS
Subjt:  KPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSP----QEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGSFS

Query:  GFQASYVDVW
        GFQAS V+ +
Subjt:  GFQASYVDVW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like1.3e-4069.4Show/hide
Query:  MENFRSLPNHLHHQKIQAPS-KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSG
        MEN +SLPNHL H+K++A + +ATM  KPIKVKYIS+PMMVKANNE EFRAIVQKLTGQHSADDAF +SPQEFN   ++ PPSSTV SFD   CY  VS 
Subjt:  MENFRSLPNHLHHQKIQAPS-KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSG

Query:  DVYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR
        D YDPIGV       GEM+ S  GFQASYVDVWR
Subjt:  DVYDPIGVGEGRNWRGEMEGSFSGFQASYVDVWR

A0A7J9MSD9 VQ domain-containing protein8.8e-0839.83Show/hide
Query:  HHQKIQAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEGR
        H  K + P K      P+KVKYIS+PMMVKA+N  EFRAIVQ+LTGQHS          +  + V+ +  ++T A  D      +   D+       EG 
Subjt:  HHQKIQAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEGR

Query:  NWRGEMEGSFSGFQASYV
         WRG  E  F GFQ+ +V
Subjt:  NWRGEMEGSFSGFQASYV

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.8e-0539.25Show/hide
Query:  KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGS
        K+T   KPIKV+YISNPM V+    S+FR +VQ+LTGQ +AD     SP  F   V    P  +  + +P    G V G+ Y P+   E      +M   
Subjt:  KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGS

Query:  FSGFQAS
         SGF +S
Subjt:  FSGFQAS

Q9LDH1 Sigma factor binding protein 1, chloroplastic1.8e-0533.06Show/hide
Query:  PNHLHHQKIQAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVA----SFDPNGCYGSVSGDVYD
        P+ +  +  +   K T   KPIKV+YISNPM V+    S+FR +VQ+LTGQ + D          +D  +  PP+  +A      +P   +G    D Y+
Subjt:  PNHLHHQKIQAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVA----SFDPNGCYGSVSGDVYD

Query:  PIGVGEGRNWRGEMEGSFSGF
        P+   E      +M   FSGF
Subjt:  PIGVGEGRNWRGEMEGSFSGF

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.3e-0639.25Show/hide
Query:  KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGS
        K+T   KPIKV+YISNPM V+    S+FR +VQ+LTGQ +AD     SP  F   V    P  +  + +P    G V G+ Y P+   E      +M   
Subjt:  KATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEGRNWRGEMEGS

Query:  FSGFQAS
         SGF +S
Subjt:  FSGFQAS

AT3G56710.1 sigma factor binding protein 11.3e-0633.06Show/hide
Query:  PNHLHHQKIQAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVA----SFDPNGCYGSVSGDVYD
        P+ +  +  +   K T   KPIKV+YISNPM V+    S+FR +VQ+LTGQ + D          +D  +  PP+  +A      +P   +G    D Y+
Subjt:  PNHLHHQKIQAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVA----SFDPNGCYGSVSGDVYD

Query:  PIGVGEGRNWRGEMEGSFSGF
        P+   E      +M   FSGF
Subjt:  PIGVGEGRNWRGEMEGSFSGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTTTAGAAGCCTTCCTAATCATCTTCATCACCAAAAAATCCAAGCTCCCAGCAAAGCAACAATGGAGGTCAAGCCCATCAAAGTCAAGTACATTTCCAATCC
CATGATGGTCAAGGCCAACAACGAGTCTGAATTTCGAGCCATAGTTCAGAAGCTCACCGGACAGCACTCCGCCGATGATGCTTTTCATCAATCACCTCAAGAGTTTAACG
ACCAAGTGTCTTATCTGCCGCCGTCGTCTACGGTGGCTTCTTTTGACCCTAATGGTTGTTACGGTTCGGTCTCCGGCGATGTCTACGATCCGATCGGGGTCGGCGAAGGC
CGCAACTGGCGAGGTGAAATGGAAGGCTCTTTTTCTGGGTTTCAAGCTTCTTATGTTGATGTGTGGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATTTTAGAAGCCTTCCTAATCATCTTCATCACCAAAAAATCCAAGCTCCCAGCAAAGCAACAATGGAGGTCAAGCCCATCAAAGTCAAGTACATTTCCAATCC
CATGATGGTCAAGGCCAACAACGAGTCTGAATTTCGAGCCATAGTTCAGAAGCTCACCGGACAGCACTCCGCCGATGATGCTTTTCATCAATCACCTCAAGAGTTTAACG
ACCAAGTGTCTTATCTGCCGCCGTCGTCTACGGTGGCTTCTTTTGACCCTAATGGTTGTTACGGTTCGGTCTCCGGCGATGTCTACGATCCGATCGGGGTCGGCGAAGGC
CGCAACTGGCGAGGTGAAATGGAAGGCTCTTTTTCTGGGTTTCAAGCTTCTTATGTTGATGTGTGGCGATGA
Protein sequenceShow/hide protein sequence
MENFRSLPNHLHHQKIQAPSKATMEVKPIKVKYISNPMMVKANNESEFRAIVQKLTGQHSADDAFHQSPQEFNDQVSYLPPSSTVASFDPNGCYGSVSGDVYDPIGVGEG
RNWRGEMEGSFSGFQASYVDVWR