; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006813 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006813
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:46055389..46056421
RNA-Seq ExpressionLag0006813
SyntenyLag0006813
Gene Ontology termsGO:0000076 - DNA replication checkpoint (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0043111 - replication fork arrest (biological process)
GO:0048478 - replication fork protection (biological process)
GO:0031298 - replication fork protection complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599343.1 TIMELESS-interacting protein, partial [Cucurbita argyrosperma subsp. sororia]8.6e-3283.81Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKAT-EEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKT
        EAKD E LFDNQEEAS +NNGADDIE+DMLQEVYEKAT EEPL NLQSDS T GETMEGV   NQEPNTSNS+ET LTE+QRARMEANRLKALERAAAK 
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKAT-EEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKT

Query:  RSLPT
        RS PT
Subjt:  RSLPT

XP_004139395.1 TIMELESS-interacting protein [Cucumis sativus]5.4e-3486.79Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAAKT
        EAKDP+D+FDNQEEASLRNNGADDIE+DMLQEVYEKATEEPLQN QSDS T G TMEGV  ANQEP TSNSSET +LTEEQR RMEANRLKALERAAAK 
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAAKT

Query:  RSLPTV
        RSLPTV
Subjt:  RSLPTV

XP_008456510.1 PREDICTED: TIMELESS-interacting protein [Cucumis melo]2.3e-3283.33Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVA--QANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAA
        EAKDPE +FDN EEASLRNNGADDIE+DMLQEVYEKATEEPLQN QSDS T G TMEGVA  + NQEP TSNSSET +LTEEQR RMEANRLKALERAAA
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVA--QANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAA

Query:  KTRSLPTV
        K RSL TV
Subjt:  KTRSLPTV

XP_022143008.1 TIMELESS-interacting protein [Momordica charantia]1.8e-3484.62Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKTR
        EAKD EDLFDN EEASLRNNG DD+E+DMLQE+YEKATEEPLQNLQSDSHT GETMEGV  +NQEPN SNSSETQ+TEEQR RMEANRLKALERAA+K R
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKTR

Query:  SLPT
        SL T
Subjt:  SLPT

XP_038889611.1 TIMELESS-interacting protein [Benincasa hispida]3.5e-3385.71Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKTR
        EAKDPE +FDNQEEA LRNNGADDIE+DMLQEVYEKATEEP QN+QSDS T GET+EGV  ANQEP  SNSSETQLTEEQR RMEANRLKALERAAAK R
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKTR

Query:  SLPTV
        SLPTV
Subjt:  SLPTV

TrEMBL top hitse value%identityAlignment
A0A0A0LI96 CCHC-type domain-containing protein2.6e-3486.79Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAAKT
        EAKDP+D+FDNQEEASLRNNGADDIE+DMLQEVYEKATEEPLQN QSDS T G TMEGV  ANQEP TSNSSET +LTEEQR RMEANRLKALERAAAK 
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAAKT

Query:  RSLPTV
        RSLPTV
Subjt:  RSLPTV

A0A1S3C4P4 TIMELESS-interacting protein1.1e-3283.33Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVA--QANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAA
        EAKDPE +FDN EEASLRNNGADDIE+DMLQEVYEKATEEPLQN QSDS T G TMEGVA  + NQEP TSNSSET +LTEEQR RMEANRLKALERAAA
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVA--QANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAA

Query:  KTRSLPTV
        K RSL TV
Subjt:  KTRSLPTV

A0A5D3BGW4 TIMELESS-interacting protein1.1e-3283.33Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVA--QANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAA
        EAKDPE +FDN EEASLRNNGADDIE+DMLQEVYEKATEEPLQN QSDS T G TMEGVA  + NQEP TSNSSET +LTEEQR RMEANRLKALERAAA
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVA--QANQEPNTSNSSET-QLTEEQRARMEANRLKALERAAA

Query:  KTRSLPTV
        K RSL TV
Subjt:  KTRSLPTV

A0A6J1CPN9 TIMELESS-interacting protein9.0e-3584.62Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKTR
        EAKD EDLFDN EEASLRNNG DD+E+DMLQE+YEKATEEPLQNLQSDSHT GETMEGV  +NQEPN SNSSETQ+TEEQR RMEANRLKALERAA+K R
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKTR

Query:  SLPT
        SL T
Subjt:  SLPT

A0A6J1KG39 TIMELESS-interacting protein4.6e-3181.9Show/hide
Query:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKAT-EEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKT
        EAKD E LFDNQEEASL+NNGADDIE+DMLQEVYEKAT EEPL NLQSDS T GET+EGV    +EPNTSNS+ET LTE+QRARMEANRLKALERAAAK 
Subjt:  EAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKAT-EEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKT

Query:  RSLPT
        RS PT
Subjt:  RSLPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G02820.1 zinc knuckle (CCHC-type) family protein6.2e-0433.07Show/hide
Query:  LAEAKDPEDLFDNQEEASL-----------------------RNNGADDIEDDMLQEVYEKATEEPL--QNLQSDSHTNGETMEGVAQANQEPNTSNSSE
        +A   DP  L++ QEE ++                        +  AD  ED ML E+++ A++ P   QN+   S    E      +A  E N   + E
Subjt:  LAEAKDPEDLFDNQEEASL-----------------------RNNGADDIEDDMLQEVYEKATEEPL--QNLQSDSHTNGETMEGVAQANQEPNTSNSSE

Query:  --TQLTEEQRARMEANRLKALERAAAK
            ++EEQR RMEANRLKALERA A+
Subjt:  --TQLTEEQRARMEANRLKALERAAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGCAGAAGCCAAGGACCCAGAGGACTTATTCGATAATCAGGAAGAGGCTTCTTTGAGGAATAATGGTGCTGATGACATTGAAGATGACATGCTTCAGGAAGTTTA
TGAAAAAGCTACTGAAGAACCATTGCAGAATTTACAAAGTGATTCCCACACCAATGGTGAAACTATGGAAGGTGTTGCCCAGGCCAACCAAGAACCAAACACTAGCAATT
CAAGTGAAACTCAGCTCACAGAGGAACAGAGAGCTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAAAGAGCTGCAGCCAAGACCCGCTCGTTGCCTACTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGCAGAAGCCAAGGACCCAGAGGACTTATTCGATAATCAGGAAGAGGCTTCTTTGAGGAATAATGGTGCTGATGACATTGAAGATGACATGCTTCAGGAAGTTTA
TGAAAAAGCTACTGAAGAACCATTGCAGAATTTACAAAGTGATTCCCACACCAATGGTGAAACTATGGAAGGTGTTGCCCAGGCCAACCAAGAACCAAACACTAGCAATT
CAAGTGAAACTCAGCTCACAGAGGAACAGAGAGCTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAAAGAGCTGCAGCCAAGACCCGCTCGTTGCCTACTGTCTGA
Protein sequenceShow/hide protein sequence
MLAEAKDPEDLFDNQEEASLRNNGADDIEDDMLQEVYEKATEEPLQNLQSDSHTNGETMEGVAQANQEPNTSNSSETQLTEEQRARMEANRLKALERAAAKTRSLPTV