; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0006817 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006817
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr6:46094943..46103686
RNA-Seq ExpressionLag0006817
SyntenyLag0006817
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015385737.1 uncharacterized protein LOC107177033 [Citrus sinensis]2.8e-0430.95Show/hide
Query:  NSVDKTATSMRVFTDVVVRPQNVGVGIGVLLAVEGDGIFSAMCKFEELFSDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHIARSCNVQAD
        N V   A    +FT  V   +   V  G+++A       SA  +   + SD    VK++N  E +  E+   I +IQ + + FQ +++ H  RSCN  A 
Subjt:  NSVDKTATSMRVFTDVVVRPQNVGVGIGVLLAVEGDGIFSAMCKFEELFSDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHIARSCNVQAD

Query:  ALAKRALQNCYSMLWLSEFPSWIQSL
        +LAK AL+N  +++WL   P  ++S+
Subjt:  ALAKRALQNCYSMLWLSEFPSWIQSL
XP_015385738.1 uncharacterized protein LOC107177034 [Citrus sinensis]2.8e-0430.95Show/hide
Query:  NSVDKTATSMRVFTDVVVRPQNVGVGIGVLLAVEGDGIFSAMCKFEELFSDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHIARSCNVQAD
        N V   A    +FT  V   +   V  G+++A       SA  +   + SD    VK++N  E +  E+   I +IQ + + FQ +++ H  RSCN  A 
Subjt:  NSVDKTATSMRVFTDVVVRPQNVGVGIGVLLAVEGDGIFSAMCKFEELFSDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHIARSCNVQAD

Query:  ALAKRALQNCYSMLWLSEFPSWIQSL
        +LAK AL+N  +++WL   P  ++S+
Subjt:  ALAKRALQNCYSMLWLSEFPSWIQSL
XP_015386106.1 uncharacterized protein LOC107177190 [Citrus sinensis]3.7e-0440.26Show/hide
Query:  SDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHIARSCNVQADALAKRALQNCYSMLWLSEFPSWIQSL
        SDSL  + ++NK+  ++ E+   I  IQE  Q FQ     H  R CN  A +LAK ALQ   +++WL E P  I  L
Subjt:  SDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHIARSCNVQADALAKRALQNCYSMLWLSEFPSWIQSL
XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]6.3e-0440.26Show/hide
Query:  SDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHIARSCNVQADALAKRALQNCYSMLWLSEFPSWIQSL
        SDSL  + ++NK+  ++ E+   I  IQE  Q FQ     H  R CN  A +LAK ALQ   +++WL E P  I  L
Subjt:  SDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHIARSCNVQADALAKRALQNCYSMLWLSEFPSWIQSL
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACCAAAGGGGAAATGGCCCATAGGGTTGGACCAAGGCCGAGGCCTGTGGGGGCTGAGTTTCCTCCTCTCCACTCAGTCCCTAGAGTCTTTTGGCTGCCCCAGTT
CAACCTGCATCGGAGGTGGTGTGGCAAGCACCACACCGGTGTGCAGGTTTTTCATGTTTTGCAGTCCATGTCTTCTCCGTTTTCAACAAATTCACTGGTGGCAAGTGAAG
GTCAGAAAGAATGGATGATTTCATTCCGGAAGGCTTATCTCTACCTCTTACAAATACCCGAAACAAGAAATCTTATGGAATATTTGGTTGGATCGCGCTACTGGGAGAAA
TATTGTGGTATGAACCCAACGCCTAATGTTAACTATCTGGTGTCCAACATTGGAGATAATAGCGTGGATAAGACTGCTACTTCAATGCGGGTGTTTACTGATGTTGTTGT
CCGGCCGCAGAACGTGGGGGTTGGTATTGGTGTTCTATTAGCAGTGGAGGGAGATGGGATTTTCTCGGCTATGTGTAAGTTCGAGGAGCTATTTTCAGATTCTCTTGTTA
CTGTCAAAATGCTAAATAAGGAGGAGATGACGGTTGCGGAAGTTCATCATTGGATTCTTCAGATCCAAGAGATGGGACAACAATTTCAGCTACTAACTTTCAATCACATT
GCGAGATCATGCAACGTTCAGGCGGATGCTTTGGCCAAAAGAGCTCTACAAAATTGTTATTCTATGTTATGGTTGTCTGAATTTCCTTCATGGATTCAATCTTTGGGCCA
ATCGACCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACACCAAAGGGGAAATGGCCCATAGGGTTGGACCAAGGCCGAGGCCTGTGGGGGCTGAGTTTCCTCCTCTCCACTCAGTCCCTAGAGTCTTTTGGCTGCCCCAGTT
CAACCTGCATCGGAGGTGGTGTGGCAAGCACCACACCGGTGTGCAGGTTTTTCATGTTTTGCAGTCCATGTCTTCTCCGTTTTCAACAAATTCACTGGTGGCAAGTGAAG
GTCAGAAAGAATGGATGATTTCATTCCGGAAGGCTTATCTCTACCTCTTACAAATACCCGAAACAAGAAATCTTATGGAATATTTGGTTGGATCGCGCTACTGGGAGAAA
TATTGTGGTATGAACCCAACGCCTAATGTTAACTATCTGGTGTCCAACATTGGAGATAATAGCGTGGATAAGACTGCTACTTCAATGCGGGTGTTTACTGATGTTGTTGT
CCGGCCGCAGAACGTGGGGGTTGGTATTGGTGTTCTATTAGCAGTGGAGGGAGATGGGATTTTCTCGGCTATGTGTAAGTTCGAGGAGCTATTTTCAGATTCTCTTGTTA
CTGTCAAAATGCTAAATAAGGAGGAGATGACGGTTGCGGAAGTTCATCATTGGATTCTTCAGATCCAAGAGATGGGACAACAATTTCAGCTACTAACTTTCAATCACATT
GCGAGATCATGCAACGTTCAGGCGGATGCTTTGGCCAAAAGAGCTCTACAAAATTGTTATTCTATGTTATGGTTGTCTGAATTTCCTTCATGGATTCAATCTTTGGGCCA
ATCGACCCACTGA
Protein sequenceShow/hide protein sequence
MDTKGEMAHRVGPRPRPVGAEFPPLHSVPRVFWLPQFNLHRRWCGKHHTGVQVFHVLQSMSSPFSTNSLVASEGQKEWMISFRKAYLYLLQIPETRNLMEYLVGSRYWEK
YCGMNPTPNVNYLVSNIGDNSVDKTATSMRVFTDVVVRPQNVGVGIGVLLAVEGDGIFSAMCKFEELFSDSLVTVKMLNKEEMTVAEVHHWILQIQEMGQQFQLLTFNHI
ARSCNVQADALAKRALQNCYSMLWLSEFPSWIQSLGQSTH