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Lag0006836 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006836
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein SHORT-ROOT 2-like
Genome locationchr6:46292214..46292693
RNA-Seq ExpressionLag0006836
SyntenyLag0006836
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586352.1 hypothetical protein SDJN03_19085, partial [Cucurbita argyrosperma subsp. sororia]2.8e-6380.86Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD +VP PLTRCSSAKDKSRSRESPE+KTD RPHFISRLGRH RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS  +PS +  SREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

XP_008460859.1 PREDICTED: uncharacterized protein LOC103499607 [Cucumis melo]2.8e-6380.84Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG---------HHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRH
        MDDSNEH+GNSS S+LKE+LKSSLCLSCCLRKHRNG         HHHH HHRRMSISSD D PGPLTRCSSAKDKSRSRE  + K D  P+FISRLGRH
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG---------HHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRH

Query:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        GRRHSASADF YDALSY+LNFDEGYDEGH DDEFPLRNFSSRLPASPPKS  SPS S ASREMITA+
Subjt:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

XP_022938304.1 uncharacterized protein LOC111444439 [Cucurbita moschata]9.6e-6481.48Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD DVP PLTRCSSAKDKSRSRESPE+KTD RPHFISRLGRH RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS  +PS +  SREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

XP_023536962.1 uncharacterized protein LOC111798189 [Cucurbita pepo subsp. pepo]1.6e-6381.48Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD DVP PLTRCSSAKDKSRSRESPE+K D RPHFISRLGRH RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS  +PS S  SREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

XP_038890730.1 homeobox protein MOX-2 [Benincasa hispida]7.6e-6987.65Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG----HHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRHS
        MDDSNEH+GNSSPSSLKE+LKSSLCLSCCLRKHRNG    HHHHHHHRRMSISSD D PGPL RCSSAKDKSRSRESPE K D RPHFISRLGRHGRRHS
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG----HHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRHS

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        ASADF YDALSYALNFDEGYDEGH DD+FPLRNFSSRLPASP KS  SPS SNASREMITA+
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

TrEMBL top hitse value%identityAlignment
A0A0A0LL60 Uncharacterized protein1.5e-6281.82Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG-----HHHHHHHRR-MSISSDSD-VPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGR
        MDDSNEH+GNSSPSSLKE+LKSSLCLSCCLRKHRNG     HHHHHHHRR MSISSD +  PGPL RCSSAKDKSRSRE  + K D  P FISRLGRHGR
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG-----HHHHHHHRR-MSISSDSD-VPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGR

Query:  RHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        RHSASADFHYDALSY+LNFDEGYDEGH DD+FPLRNFSSRLPASPPKS  SPS + ASREMITA+
Subjt:  RHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

A0A1S3CDF1 uncharacterized protein LOC1034996071.4e-6380.84Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG---------HHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRH
        MDDSNEH+GNSS S+LKE+LKSSLCLSCCLRKHRNG         HHHH HHRRMSISSD D PGPLTRCSSAKDKSRSRE  + K D  P+FISRLGRH
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG---------HHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRH

Query:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        GRRHSASADF YDALSY+LNFDEGYDEGH DDEFPLRNFSSRLPASPPKS  SPS S ASREMITA+
Subjt:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

A0A5D3BFQ4 Uncharacterized protein3.0e-6380.24Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG---------HHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRH
        MDDSNEH+GNSS S+LKE+LKSSLCLSCCLRKHRNG         HHHH HHRRMSISSD D PGPLTRCSSAKDKSRSRE  + K D  P+FISRLGRH
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNG---------HHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRH

Query:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        GRRHSASADF YDALSY+LNFDEGYDEGH DDEFPLRNFSSRLPASPPKS  +PS S ASREMITA+
Subjt:  GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

A0A6J1FDP2 uncharacterized protein LOC1114444394.6e-6481.48Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD DVP PLTRCSSAKDKSRSRESPE+KTD RPHFISRLGRH RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS  +PS +  SREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

A0A6J1HQB7 uncharacterized protein LOC1114657103.0e-6381.48Show/hide
Query:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S
        MDDSNEH+ N+SPSSLK  +KSSLCLSCCLR+HRNGHHH   H H RRMS SSD DVP PLTRCSSAKDKSRSRESPE+KTD RPHFISRLG H RRH S
Subjt:  MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHH---HHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRH-S

Query:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY
        AS DFHYDALSYALNFDEGYDEGH DD FPLRNFSSRLPASPPKS   PS S  SREM TAY
Subjt:  ASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)6.7e-0752.08Show/hide
Query:  GRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPA
        G    R S    F YD LSY+LNFD+G   GH DDEFP R++S R  A
Subjt:  GRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPA

AT5G11070.1 unknown protein4.1e-0438.96Show/hide
Query:  KDKSRSRESPEAKTDCRPH---FISRLGRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASP
        +D+ R R     K  CR +   + + +  H    S   DF YD LSYALNF+   D   ADD+    NF++RLP SP
Subjt:  KDKSRSRESPEAKTDCRPH---FISRLGRHGRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASP

AT5G14890.1 NHL domain-containing protein4.4e-0641.94Show/hide
Query:  FISRLGRH---------GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPA
        FI R GR+         G        F YD+ SY+LNFD+G   GH +DEFP R++S R  A
Subjt:  FISRLGRH---------GRRHSASADFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPA

AT5G35090.1 unknown protein1.8e-1235.26Show/hide
Query:  SLKEILKSSLCLSCCLRKHRNGHHHHHHH-----RRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRL----------GRHGRRHSASA
        SL++ LKS  C++ C    R  +HHHH +         ++++     P       K    +R   ++   C+   I R+          G+H RRH  +A
Subjt:  SLKEILKSSLCLSCCLRKHRNGHHHHHHH-----RRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRL----------GRHGRRHSASA

Query:  DFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMI
        DFHYD  SYALNFD+G DE    D FPLRNFS+RLP SPP S+ +   S   + ++
Subjt:  DFHYDALSYALNFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGATTCGAACGAACACAGGGGAAATTCCTCGCCGTCGTCTCTCAAGGAGATTCTCAAATCTTCTCTCTGTTTGTCCTGCTGCCTCCGTAAGCACCGGAACGGCCA
CCACCACCACCACCACCACCGGAGGATGTCGATTTCCTCCGACAGCGATGTGCCTGGACCGCTCACGAGGTGCTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTC
CTGAGGCTAAGACCGATTGCCGTCCGCATTTCATCTCGCGACTTGGACGCCATGGACGCCGCCACTCTGCCTCGGCCGATTTCCACTACGATGCGCTCAGTTACGCGCTC
AATTTCGACGAAGGATACGATGAAGGCCATGCCGATGATGAGTTTCCGCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCGTCGCCGTCGCCGTCTCC
GTCGAATGCGTCAAGGGAGATGATCACGGCATATAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGATTCGAACGAACACAGGGGAAATTCCTCGCCGTCGTCTCTCAAGGAGATTCTCAAATCTTCTCTCTGTTTGTCCTGCTGCCTCCGTAAGCACCGGAACGGCCA
CCACCACCACCACCACCACCGGAGGATGTCGATTTCCTCCGACAGCGATGTGCCTGGACCGCTCACGAGGTGCTCCTCTGCCAAGGATAAATCCAGATCTCGCGAGAGTC
CTGAGGCTAAGACCGATTGCCGTCCGCATTTCATCTCGCGACTTGGACGCCATGGACGCCGCCACTCTGCCTCGGCCGATTTCCACTACGATGCGCTCAGTTACGCGCTC
AATTTCGACGAAGGATACGATGAAGGCCATGCCGATGATGAGTTTCCGCTCAGGAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCGAAATCGTCGCCGTCGCCGTCTCC
GTCGAATGCGTCAAGGGAGATGATCACGGCATATAGATAA
Protein sequenceShow/hide protein sequence
MDDSNEHRGNSSPSSLKEILKSSLCLSCCLRKHRNGHHHHHHHRRMSISSDSDVPGPLTRCSSAKDKSRSRESPEAKTDCRPHFISRLGRHGRRHSASADFHYDALSYAL
NFDEGYDEGHADDEFPLRNFSSRLPASPPKSSPSPSPSNASREMITAYR