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Lag0006937 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006937
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr6:47250041..47250439
RNA-Seq ExpressionLag0006937
SyntenyLag0006937
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TQD83682.1 hypothetical protein C1H46_030757 [Malus baccata]6.0e-2775.9Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML+DMIS+LKK GY+PEKSEV+ ++DEEEKETALSLHSEKLAI FGLISTKP   IR+V+NLRVC+DC+TATK+ISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

XP_004288819.2 PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Fragaria vesca subsp. vesca]4.6e-2775.9Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        MLDDMIS+LKK GY+P+KSEV F+MDEE+KETA SLHSEKLAI FGLIST PG  IR+V+NLRVC+DC+TATK+ISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

XP_009371401.1 PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Pyrus x bretschneideri]6.0e-2775.9Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML+DMIS+LKK GY+PEKSEV+ ++DEEEKETALSLHSEKLAI FGLISTKP   IR+V+NLRVC+DC+TATK+ISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

XP_021646243.1 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Hevea brasiliensis]3.5e-2772.29Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML+DMIS+LKK GY+P K+EV+F+MDEEEKETALSLHSEKLAI FGL++T PG P+R+V+NLRVC+DC+TATK+ISK+Y R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

XP_024182101.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Rosa chinensis]4.9e-2978.31Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML+DMIS+LKK GY+P+KSEV+F+MDEEEKETALSLHSEKLAI FGLIST PG PIR+V+NLRVC+DC+TATK+ISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

TrEMBL top hitse value%identityAlignment
A0A2P6RJ71 Putative tetratricopeptide-like helical domain, DYW domain-containing protein2.4e-2978.31Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML+DMIS+LKK GY+P+KSEV+F+MDEEEKETALSLHSEKLAI FGLIST PG PIR+V+NLRVC+DC+TATK+ISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

A0A540LBP5 DYW_deaminase domain-containing protein2.9e-2775.9Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML+DMIS+LKK GY+PEKSEV+ ++DEEEKETALSLHSEKLAI FGLISTKP   IR+V+NLRVC+DC+TATK+ISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

A0A5E4GQU3 PREDICTED: pentatricopeptide3.8e-2775.9Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML DMI +LKK GY+PEKSEV+ ++DEEEKETALSLHSEKLAI FGLIST PG  IR+V+NLRVC+DC+TATKIISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

A0A6P5SU63 pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like isoform X13.8e-2775.9Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML DMI +LKK GY+PEKSEV+ ++DEEEKETALSLHSEKLAI FGLIST PG  IR+V+NLRVC+DC+TATKIISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

M5VTK1 DYW_deaminase domain-containing protein3.8e-2775.9Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML DMI +LKK GY+PEKSEV+ ++DEEEKETALSLHSEKLAI FGLIST PG  IR+V+NLRVC+DC+TATKIISKVY R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

SwissProt top hitse value%identityAlignment
Q683I9 Pentatricopeptide repeat-containing protein At3g628904.8e-1947.06Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEI
        MLD+++ +L++ GY+ +  EV+ +++E++KE ALS HSEKLAI F L+ T+PG P+RI++NLR+C DC+   K+ISK++ R + +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEI

Q9FI80 Pentatricopeptide repeat-containing protein At5g489102.8e-1951.76Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEI
        ML ++  KL+  GY P  ++V+  ++EE+KE  L  HSEK+A  FGLIST PG PIRIV+NLR+C DC+++ K+ISKVY+R + +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEI

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic5.1e-2160.24Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML++M   L+K G++P+ SEV+ EM+EE KE AL  HSEKLAI FGLISTKPG  + IV+NLRVC +C+ ATK+ISK+Y+R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

Q9SMZ2 Pentatricopeptide repeat-containing protein At4g331703.3e-2056.25Show/hide
Query:  DMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        DMI  +K+EGY+PE    + +++EEEKE AL  HSEKLA+ FGL+ST P  PIR+++NLRVC DC+ A K I+KVY R +
Subjt:  DMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

Q9SZT8 Pentatricopeptide repeat-containing protein ELI1, chloroplastic4.8e-1950.6Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML  +  ++K  GY+P  + V+ +++E EKE +L +HSE+LAI +GLISTKPG+P++I +NLRVC+DC+T TK+ISK+  R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.6e-2260.24Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML++M   L+K G++P+ SEV+ EM+EE KE AL  HSEKLAI FGLISTKPG  + IV+NLRVC +C+ ATK+ISK+Y+R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein3.4e-2047.06Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEI
        MLD+++ +L++ GY+ +  EV+ +++E++KE ALS HSEKLAI F L+ T+PG P+RI++NLR+C DC+   K+ISK++ R + +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEI

AT4G33170.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.3e-2156.25Show/hide
Query:  DMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        DMI  +K+EGY+PE    + +++EEEKE AL  HSEKLA+ FGL+ST P  PIR+++NLRVC DC+ A K I+KVY R +
Subjt:  DMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.4e-2050.6Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV
        ML  +  ++K  GY+P  + V+ +++E EKE +L +HSE+LAI +GLISTKPG+P++I +NLRVC+DC+T TK+ISK+  R +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGV

AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein2.0e-2051.76Show/hide
Query:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEI
        ML ++  KL+  GY P  ++V+  ++EE+KE  L  HSEK+A  FGLIST PG PIRIV+NLR+C DC+++ K+ISKVY+R + +
Subjt:  MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGATGACATGATTAGTAAGCTGAAGAAAGAAGGCTACATTCCGGAGAAATCAGAAGTCGTGTTCGAGATGGATGAAGAAGAGAAAGAGACTGCTCTTAGCCTTCA
CAGTGAGAAACTAGCTATTGTCTTTGGACTTATTAGTACAAAACCTGGGGCACCAATCCGAATTGTGAGAAATCTTCGTGTTTGCACTGATTGCTACACTGCTACTAAGA
TCATCTCAAAGGTTTACAGAAGAGGAGTAGAAATAGGTTTCGCCATTTTAAGGATGGGAGATGTTCTGGTGACCATTCATATATATCAACAGAAGTTCAAGACTGCTGTG
CAGTTTGACTCAATATCAATCCATAAGATATGGTTCTTTCTCATTCTAAATTTGCTAGATTTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGATGACATGATTAGTAAGCTGAAGAAAGAAGGCTACATTCCGGAGAAATCAGAAGTCGTGTTCGAGATGGATGAAGAAGAGAAAGAGACTGCTCTTAGCCTTCA
CAGTGAGAAACTAGCTATTGTCTTTGGACTTATTAGTACAAAACCTGGGGCACCAATCCGAATTGTGAGAAATCTTCGTGTTTGCACTGATTGCTACACTGCTACTAAGA
TCATCTCAAAGGTTTACAGAAGAGGAGTAGAAATAGGTTTCGCCATTTTAAGGATGGGAGATGTTCTGGTGACCATTCATATATATCAACAGAAGTTCAAGACTGCTGTG
CAGTTTGACTCAATATCAATCCATAAGATATGGTTCTTTCTCATTCTAAATTTGCTAGATTTATTTTGA
Protein sequenceShow/hide protein sequence
MLDDMISKLKKEGYIPEKSEVVFEMDEEEKETALSLHSEKLAIVFGLISTKPGAPIRIVRNLRVCTDCYTATKIISKVYRRGVEIGFAILRMGDVLVTIHIYQQKFKTAV
QFDSISIHKIWFFLILNLLDLF