CuGenDBv2

Gene ID	Lag0006938
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	U1 small nuclear ribonucleoprotein 70 kDa
Genome location	chr6:47253082..47256415
RNA-Seq Expression	Lag0006938
Synteny	Lag0006938
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022143227.1 U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]

4.2e-97

66.37

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Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFGR--------
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 TIDGRVVRVNGVK+RGGGRFGR        
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFGR--------

Query:  -FDVERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGID
          D E+DRDRGRDYDHDRY H              RE DLDKER YEHPQDRD PKDKLLDRDPELEKTS+DN  V DLN DQDWEKD DADWSGG  ID
Subjt:  -FDVERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGID

Query:  NADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA----------
        N DDYDKSLDNDRD  SR+D+GL IE RT R++SS S+DDYIHELKEQLEISTERFEELRKEIS++EERT EKGKLV++LQKKAKKLEDA          
Subjt:  NADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA----------

Query:  ----LTKLHKNFLLVKDYSEKL-TSEQELQFLI
            LTKLHK+FLLVKDYSE+L +SEQELQ L+
Subjt:  ----LTKLHKNFLLVKDYSEKL-TSEQELQFLI

XP_022946346.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata]

1.1e-92

64.88

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Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 TI+GRVVRVNGV TRGGGRFG    RFDV 
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-

Query:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS
             ERDRDRGRDY+HDRYR               RE DLDKERVYEH QDRD PKD LLDR+PELEK  + N + +D  L+H QDWEKD DADW+GG 
Subjt:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS

Query:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------
        GIDN DDYDKSL +DRD LSR+DNGLAIE RT R+LSS S+DDYIHELKEQLEISTERFEELRKEISQ+EERT EKGKLV++LQKKAKKLEDA       
Subjt:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------

Query:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI
               LTKLHK+FLLVKDYSE+L  SEQELQ L+
Subjt:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI

XP_022999196.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima]

3.1e-92

64.58

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Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 TI+GRVVRVNGV TRGGGRFG    RFDV 
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-

Query:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS
             ERDRDRGRDY+HDRYR               RE DLDKERVYEH QDRD PKD LLDR+PELEK  + N + +D  L+H QDWEKD D DW+GG 
Subjt:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS

Query:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------
        GIDN DDYDKSL +DRD LSR+DNGLAIE RT R+LSS S+DDYIHELKEQLEISTERFEELRKEISQ+EERT EKGKLV++LQKKAKKLEDA       
Subjt:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------

Query:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI
               LTKLHK+FLLVKDYSE+L  SEQELQ L+
Subjt:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI

XP_023547216.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]

3.1e-92

64.58

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Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 TI+GRVVRVNGV TRGGGRFG    RFDV 
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-

Query:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS
             ERDRDRGRDY+HDRYR               RE DLDKER YEH QDRD PKD LLDR+PELEK  + N + +D  L+H QDWEKD DADW+GG 
Subjt:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS

Query:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------
        GIDN DDYDKSL +DRD LSR+DNGLAIE RT R+LSS S+DDYIHELKEQLEISTERFEELRKEISQ+EERT EKGKLV++LQKKAKKLEDA       
Subjt:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------

Query:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI
               LTKLHK+FLLVKDYSE+L  SEQELQ L+
Subjt:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI

XP_038889756.1 serine/threonine-protein kinase prpf4B [Benincasa hispida]

8.2e-93

65.18

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Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 +I+GRVVRVNGVK+R GGRFG    RFDV 
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-

Query:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS
             ERDRDRGRDYDHDRYRH              RE DLDKER YEH QD D PKDKLLDRDPELEK+S+DN KV D  LNHDQD EK+  ADW GG 
Subjt:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS

Query:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------
        GIDNADDY+KSLDNDR+ LSR+DNGL  E RT RDLSS S+DDYIHELKEQLEISTER EELRKE+SQ+EER+ EK KLVI+LQKKAKKLEDA       
Subjt:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------

Query:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI
               LTKLHK+FLLVKDYSE+L TSEQELQ L+
Subjt:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V7D5 Zinc finger CCCH domain-containing protein 25

1.8e-90

63.39

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Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-
        MTVDDDSSIYV GLPYDATE++LRR FDLYGAVVAVK                                 TI+GRVVRVNGVK+R GGRFG    RFD  
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-

Query:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS
             ERDRDRGRDYDHDRYRH              RE DLDKER Y+H QDRD PKD+ LDRDPELEKTS+DN K+ D  LNHDQDWEKD  AD SGG 
Subjt:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS

Query:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------
        GID  DDYDKSLDNDRD + R+DN L IE RT RDLSS S+DDYIHELKEQLEISTER EELRKE+SQ+EER+ EK KLV++LQKKAKKLEDA       
Subjt:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------

Query:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI
               L KLHK+FLLVKDYS++L TSEQELQ L+
Subjt:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI

A0A5D3CHM1 Zinc finger CCCH domain-containing protein 25

1.7e-91

63.99

Show/hide

Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 TI+GRVVRVNGVK+R GGRFG    RFD  
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-

Query:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS
             ERDRDRGRDYDHDRYRH              RE DLDKER Y+H QDRD PKD+ LDRDPELEKTS+DN K+ D  LNHDQDWEKD  AD SGG 
Subjt:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS

Query:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------
        GID  DDYDKSLDNDRD + R+DNGL IE RT RDLSS S+DDYIHELKEQLEISTER EELRKE+SQ+EER+ EK KLV++LQKKAKKLEDA       
Subjt:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------

Query:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI
               L KLHK+FLLVKDYS++L TSEQELQ L+
Subjt:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI

A0A6J1CQ67 U1 small nuclear ribonucleoprotein 70 kDa

2.0e-97

66.37

Show/hide

Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFGR--------
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 TIDGRVVRVNGVK+RGGGRFGR        
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFGR--------

Query:  -FDVERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGID
          D E+DRDRGRDYDHDRY H              RE DLDKER YEHPQDRD PKDKLLDRDPELEKTS+DN  V DLN DQDWEKD DADWSGG  ID
Subjt:  -FDVERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGID

Query:  NADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA----------
        N DDYDKSLDNDRD  SR+D+GL IE RT R++SS S+DDYIHELKEQLEISTERFEELRKEIS++EERT EKGKLV++LQKKAKKLEDA          
Subjt:  NADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA----------

Query:  ----LTKLHKNFLLVKDYSEKL-TSEQELQFLI
            LTKLHK+FLLVKDYSE+L +SEQELQ L+
Subjt:  ----LTKLHKNFLLVKDYSEKL-TSEQELQFLI

A0A6J1G3E0 U1 small nuclear ribonucleoprotein 70 kDa

5.2e-93

64.88

Show/hide

Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 TI+GRVVRVNGV TRGGGRFG    RFDV 
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-

Query:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS
             ERDRDRGRDY+HDRYR               RE DLDKERVYEH QDRD PKD LLDR+PELEK  + N + +D  L+H QDWEKD DADW+GG 
Subjt:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS

Query:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------
        GIDN DDYDKSL +DRD LSR+DNGLAIE RT R+LSS S+DDYIHELKEQLEISTERFEELRKEISQ+EERT EKGKLV++LQKKAKKLEDA       
Subjt:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------

Query:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI
               LTKLHK+FLLVKDYSE+L  SEQELQ L+
Subjt:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI

A0A6J1KCE4 U1 small nuclear ribonucleoprotein 70 kDa

1.5e-92

64.58

Show/hide

Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-
        MTVDDDSSIYV GLPYDATE+SLRR FDLYGAVVAVK                                 TI+GRVVRVNGV TRGGGRFG    RFDV 
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVK---------------------------------TIDGRVVRVNGVKTRGGGRFG----RFDV-

Query:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS
             ERDRDRGRDY+HDRYR               RE DLDKERVYEH QDRD PKD LLDR+PELEK  + N + +D  L+H QDWEKD D DW+GG 
Subjt:  -----ERDRDRGRDYDHDRYRH--------------RERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQD--LNHDQDWEKDRDADWSGGS

Query:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------
        GIDN DDYDKSL +DRD LSR+DNGLAIE RT R+LSS S+DDYIHELKEQLEISTERFEELRKEISQ+EERT EKGKLV++LQKKAKKLEDA       
Subjt:  GIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLEDA-------

Query:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI
               LTKLHK+FLLVKDYSE+L  SEQELQ L+
Subjt:  -------LTKLHKNFLLVKDYSEKL-TSEQELQFLI

SwissProt top hits

e value

%identity

Alignment

Q54HS3 Histone-lysine N-methyltransferase set1

2.3e-05

37.61

Show/hide

Query:  RDRGRDYDHDRYRHRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGIDNADDYDKSLDNDRDPLSRKDN
        RDR RD++ DR R  ERD D ER  +  +DRD+ +D   DRD E ++  E     +D + D+DWE+DRD DW      D   D+++  + DRD   R+ N
Subjt:  RDRGRDYDHDRYRHRERDLDKERVYEHPQDRDQPKDKLLDRDPELEKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGIDNADDYDKSLDNDRDPLSRKDN

Query:  GLAIEDRTIRDLSSYST
               T    S+ ST
Subjt:  GLAIEDRTIRDLSSYST

Arabidopsis top hits

e value

%identity

Alignment

AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.0e-21

32.63

Show/hide

Query:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAV---------------------------------KTIDGRVVRVNGVKTRGG------GRF---G
        MT+DD +S+YV GLPYD TEE++RR F +YG+V+ V                                 K+I GR VRVN V TRGG      GR    G
Subjt:  MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAV---------------------------------KTIDGRVVRVNGVKTRGG------GRF---G

Query:  RFDVERDRDRGRDYDHDRY--RHRERD-----------LDKERVYEHPQDRDQPKD-KLLDRDPELEKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGID
         +D   DR    +Y+ DRY  R RERD           ++KER YEH  D ++  D  ++DR+   E+  + +        + DW  DR +    G GI+
Subjt:  RFDVERDRDRGRDYDHDRY--RHRERD-----------LDKERVYEHPQDRDQPKD-KLLDRDPELEKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGID

Query:  NADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLED-----------
               S    R   +++++   ++    RD  S S+ D  H++KE LE   +  E LR E+  +EER   K  +  +LQKK+K+LED           
Subjt:  NADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKLVIDLQKKAKKLED-----------

Query:  ---ALTKLHKNFLLVKDYSEKLTS-EQELQFLIS
            L KLHK++  V++ ++ L   EQELQ L++
Subjt:  ---ALTKLHKNFLLVKDYSEKLTS-EQELQFLIS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACGGTGGACGACGATAGCTCGATATACGTCGCCGGACTTCCTTACGACGCCACCGAGGAGAGTCTGCGCAGATTCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAA
GACTATTGATGGGCGAGTTGTTAGAGTTAATGGAGTGAAGACTAGAGGTGGTGGAAGGTTTGGTAGATTCGACGTAGAGAGGGATAGAGATCGAGGGAGGGATTATGATC
ATGACAGATACCGTCATAGAGAACGTGATTTGGACAAGGAAAGAGTATATGAGCATCCACAAGATCGTGATCAACCCAAGGATAAATTATTGGATAGGGATCCAGAGTTG
GAAAAAACTTCAGAGGATAATGGGAAGGTACAAGATTTGAACCACGATCAAGATTGGGAAAAAGATCGTGATGCAGATTGGAGTGGAGGCAGTGGCATTGATAACGCTGA
TGATTATGATAAAAGTCTTGACAATGATAGAGATCCACTGTCAAGGAAAGATAACGGTCTTGCAATTGAAGATCGAACTATTCGGGATCTTTCATCATATTCTACTGATG
ATTATATCCATGAACTAAAGGAACAACTGGAGATATCAACTGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAACTAGAGGAGAGGACTGCAGAGAAAGGAAAACTC
GTGATTGATTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGACCAAGCTCCATAAAAACTTTCTGCTAGTGAAGGATTATTCTGAGAAACTAACCAGTGAACAAGA
ACTTCAGTTTTTGATTTCCCTTCTTTCTAATGCCTTACATTTGACCGTCTCTGCATCCAATCCCTCTTCTCCAAAGATGCTTGCAATTCATCCTTTTGCCATTGCACATG
AATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTVDDDSSIYVAGLPYDATEESLRRFFDLYGAVVAVKTIDGRVVRVNGVKTRGGGRFGRFDVERDRDRGRDYDHDRYRHRERDLDKERVYEHPQDRDQPKDKLLDRDPEL
EKTSEDNGKVQDLNHDQDWEKDRDADWSGGSGIDNADDYDKSLDNDRDPLSRKDNGLAIEDRTIRDLSSYSTDDYIHELKEQLEISTERFEELRKEISQLEERTAEKGKL
VIDLQKKAKKLEDALTKLHKNFLLVKDYSEKLTSEQELQFLISLLSNALHLTVSASNPSSPKMLAIHPFAIAHE

Lag0006938 (gene) of Sponge gourd (AG-4) v1 genome