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Lag0006989 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0006989
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSNW/SKI-interacting protein-like
Genome locationchr6:47809750..47810058
RNA-Seq ExpressionLag0006989
SyntenyLag0006989
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
InterPro domainsIPR017862 - SKI-interacting protein, SKIP


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154720.1 SNW/SKI-interacting protein-like [Momordica charantia]2.1e-48100Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

XP_022946395.1 SNW/SKI-interacting protein-like [Cucurbita moschata]6.2e-4899.02Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGR+RIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

XP_022999451.1 SNW/SKI-interacting protein-like [Cucurbita maxima]6.2e-4899.02Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGR+RIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

XP_023546003.1 SNW/SKI-interacting protein A-like [Cucurbita pepo subsp. pepo]6.2e-4899.02Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGR+RIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

XP_038877424.1 SNW/SKI-interacting protein A-like [Benincasa hispida]1.1e-4799.02Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSS RDGYDGGSGRTRIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

TrEMBL top hitse value%identityAlignment
A0A0A0LIR8 SKIP_SNW domain-containing protein1.1e-4798.04Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKI KTDRFKPDKSFSGT+ERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

A0A1S4E1T1 SNW/SKI-interacting protein-like5.6e-4797.06Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKI KTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSS RDGYDGGSGRTRIGFE+
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

A0A6J1DKF4 SNW/SKI-interacting protein-like1.0e-48100Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

A0A6J1G3R1 SNW/SKI-interacting protein-like3.0e-4899.02Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGR+RIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

A0A6J1KD39 SNW/SKI-interacting protein-like3.0e-4899.02Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER
        MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGR+RIGFER
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFER

Query:  GH
        GH
Subjt:  GH

SwissProt top hitse value%identityAlignment
O80653 SNW/SKI-interacting protein4.6e-3068.93Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSG-PRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRAS--GGSSTRDGYDGGSGRTRIG
        MYG ADEQLDKI  T+RFKPDK+F+G +ER G  RDRPVEFE+E EE DPFGL+++++++KKGKK +DK+GSGGTMRAS  GGSS+RD   GGSGRT+I 
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSG-PRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRAS--GGSSTRDGYDGGSGRTRIG

Query:  FER
        FER
Subjt:  FER

P39736 Puff-specific protein Bx426.5e-0844.19Show/hide
Query:  YGGADEQLDKIMKTDRFKPDKSFSGTAER--SGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRD
        YGG    LD I+ T RF PDK FSG ++   +G R  PVEFE+   E DPFGLDQFL   KK  K  ++  +  +  +    S RD
Subjt:  YGGADEQLDKIMKTDRFKPDKSFSGTAER--SGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRD

Q1JQE0 SNW domain-containing protein 17.9e-0638.95Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTR
        MYG   + L+  +KT+RF PDK FSG+  R   R+ PV+FE      DPFGLD+FL E K+          GG+ R S  S  ++    G  R +
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTR

Q69QB5 SNW/SKI-interacting protein B2.0e-1259.38Show/hide
Query:  YGGADEQLDKIMKTDRFKPDKSFSG--TAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGK
        YG ADE L KI KT RF PDK+F+G   +  +G R+RPVEF+    E DPF LDQFLT++KKGK
Subjt:  YGGADEQLDKIMKTDRFKPDKSFSG--TAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGK

Q6K8D9 SNW/SKI-interacting protein A2.5e-3677.45Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYD-GGSGRTRIGFE
        +YG ADEQL+K+MKTDRFKPDK FSG +ERSG RDRPVEF+++ EE DPFGLDQFLTEVKKGKKA++K+GSGG MRASGGSS RD Y+ GGSGR+RI FE
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYD-GGSGRTRIGFE

Query:  RG
        RG
Subjt:  RG

Arabidopsis top hitse value%identityAlignment
AT1G77180.1 chromatin protein family3.3e-3168.93Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSG-PRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRAS--GGSSTRDGYDGGSGRTRIG
        MYG ADEQLDKI  T+RFKPDK+F+G +ER G  RDRPVEFE+E EE DPFGL+++++++KKGKK +DK+GSGGTMRAS  GGSS+RD   GGSGRT+I 
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSG-PRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRAS--GGSSTRDGYDGGSGRTRIG

Query:  FER
        FER
Subjt:  FER

AT1G77180.2 chromatin protein family3.3e-3168.93Show/hide
Query:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSG-PRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRAS--GGSSTRDGYDGGSGRTRIG
        MYG ADEQLDKI  T+RFKPDK+F+G +ER G  RDRPVEFE+E EE DPFGL+++++++KKGKK +DK+GSGGTMRAS  GGSS+RD   GGSGRT+I 
Subjt:  MYGGADEQLDKIMKTDRFKPDKSFSGTAERSG-PRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRAS--GGSSTRDGYDGGSGRTRIG

Query:  FER
        FER
Subjt:  FER

AT1G77180.3 chromatin protein family4.0e-1367.27Show/hide
Query:  DPFGLDQFLTEVKKGKKAMDKVGSGGTMRAS--GGSSTRDGYDGGSGRTRIGFER
        DPFGL+++++++KKGKK +DK+GSGGTMRAS  GGSS+RD   GGSGRT+I FER
Subjt:  DPFGLDQFLTEVKKGKKAMDKVGSGGTMRAS--GGSSTRDGYDGGSGRTRIGFER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGGAGGTGCTGATGAACAGTTAGACAAGATTATGAAGACTGATCGCTTCAAGCCAGACAAATCGTTTTCAGGCACTGCAGAAAGGTCTGGACCTAGAGACAGACC
GGTTGAGTTTGAAAGAGAGGTCGAAGAAGCCGATCCATTTGGACTCGACCAGTTCTTGACCGAAGTGAAGAAAGGTAAGAAAGCTATGGATAAAGTTGGCAGTGGTGGGA
CGATGAGAGCCAGCGGTGGCTCATCGACCCGTGATGGCTATGATGGTGGCTCTGGCAGAACTCGTATTGGATTTGAAAGAGGGCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATGGAGGTGCTGATGAACAGTTAGACAAGATTATGAAGACTGATCGCTTCAAGCCAGACAAATCGTTTTCAGGCACTGCAGAAAGGTCTGGACCTAGAGACAGACC
GGTTGAGTTTGAAAGAGAGGTCGAAGAAGCCGATCCATTTGGACTCGACCAGTTCTTGACCGAAGTGAAGAAAGGTAAGAAAGCTATGGATAAAGTTGGCAGTGGTGGGA
CGATGAGAGCCAGCGGTGGCTCATCGACCCGTGATGGCTATGATGGTGGCTCTGGCAGAACTCGTATTGGATTTGAAAGAGGGCATTAG
Protein sequenceShow/hide protein sequence
MYGGADEQLDKIMKTDRFKPDKSFSGTAERSGPRDRPVEFEREVEEADPFGLDQFLTEVKKGKKAMDKVGSGGTMRASGGSSTRDGYDGGSGRTRIGFERGH