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Lag0007009 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007009
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationchr6:48011864..48016599
RNA-Seq ExpressionLag0007009
SyntenyLag0007009
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022933804.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Cucurbita moschata]8.3e-3375.7Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD LISC RDS+F TAQISAAE I+S QGRF+TSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

XP_023007456.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Cucurbita maxima]1.3e-3376.64Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD+LISC RDS+F TAQISAAE I+S QGRFSTSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

XP_023007466.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X2 [Cucurbita maxima]1.3e-3376.64Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD+LISC RDS+F TAQISAAE I+S QGRFSTSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

XP_023007474.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X3 [Cucurbita maxima]1.3e-3376.64Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD+LISC RDS+F TAQISAAE I+S QGRFSTSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

XP_023530379.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucurbita pepo subsp. pepo]2.9e-3375.7Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD+LISC RDS+F TAQISAAE I+S QGRF+TSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

TrEMBL top hitse value%identityAlignment
A0A6J1F0S1 RING-type E3 ubiquitin transferase4.0e-3375.7Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD LISC RDS+F TAQISAAE I+S QGRF+TSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

A0A6J1F5V1 RING-type E3 ubiquitin transferase4.0e-3375.7Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD LISC RDS+F TAQISAAE I+S QGRF+TSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

A0A6J1L0K6 RING-type E3 ubiquitin transferase6.2e-3476.64Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD+LISC RDS+F TAQISAAE I+S QGRFSTSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

A0A6J1L0L5 RING-type E3 ubiquitin transferase6.2e-3476.64Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD+LISC RDS+F TAQISAAE I+S QGRFSTSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

A0A6J1L515 RING-type E3 ubiquitin transferase6.2e-3476.64Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S  K L+  +     +TMHSLL +LQT+HRDQCPVVAGLLLQLDILVE  KMSIYREEAMD+LISC RDS+F TAQISAAE I+S QGRFSTSGQPLARY
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        FLLERAG
Subjt:  FLLERAG

SwissProt top hitse value%identityAlignment
C6L7U1 Putative E3 ubiquitin-protein ligase LIN-11.7e-1240.19Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S N+ L T + E   +TMH+ L++LQ +  +    VA LLLQLD+L E +KMSIYREEA++ LI      +F   Q+ A + ++   G  S+SG+     
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        +LL+ AG
Subjt:  FLLERAG

D1FP53 Putative E3 ubiquitin-protein ligase LIN7.1e-1138.32Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S+N+ L+  + E   +TMH+ L++LQ +  +    VA LLLQLD+L E +KMSIYREEA++ LI      +F   Q+ A + ++   G  ++SG+     
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
         LL+ AG
Subjt:  FLLERAG

D1FP57 Putative E3 ubiquitin-protein ligase LIN-21.7e-1240.19Show/hide
Query:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY
        S N+ L T + E   +TMH+ L++LQ +  +    VA LLLQLD+L E +KMSIYREEA++ LI      +F   Q+ A + ++   G  S+SG+     
Subjt:  STNKFLKTSRMEVIVATMHSLLIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARY

Query:  FLLERAG
        +LL+ AG
Subjt:  FLLERAG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATGGAGGACATAGATAGAGATATAAAGTTGGGGATTGGGGTCATCCGACCAGGAAACCAACATCCGGCTGCTAATTTCAACACTCTGTCAGTTAAGATAAACAA
GTTTGTTCTCCTGGTCACTCTCATATTTTTCTTTTTCATCAATGTCTTGTGGATGGGAATGGAGGACATAGATAGAGATGTAAAGTTGGGGATTGGGGTCATCCGGCAAG
GAAATCAACATCCGACTGCTACTTTCAACACTCTATCAGGAGGACCTTCAACGAACAAATTCCTCAAAACATCAAGGATGGAGGTGATTGTAGCCACTATGCACTCTCTT
TTGATATTTTTACAGACCTCTCACAGAGATCAATGCCCTGTTGTGGCTGGTCTTCTGCTACAACTTGATATCTTGGTGGAATTGCAAAAGATGAGTATCTATCGTGAAGA
AGCGATGGATATCCTTATTTCATGCCAAAGAGACTCCAATTTCCAAACTGCTCAAATCTCTGCTGCTGAGATGATAGTGTCTTTCCAAGGAAGGTTTAGCACCTCTGGAC
AACCCTTAGCTAGGTATTTTCTTCTTGAGCGTGCTGGACCTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATGGAGGACATAGATAGAGATATAAAGTTGGGGATTGGGGTCATCCGACCAGGAAACCAACATCCGGCTGCTAATTTCAACACTCTGTCAGTTAAGATAAACAA
GTTTGTTCTCCTGGTCACTCTCATATTTTTCTTTTTCATCAATGTCTTGTGGATGGGAATGGAGGACATAGATAGAGATGTAAAGTTGGGGATTGGGGTCATCCGGCAAG
GAAATCAACATCCGACTGCTACTTTCAACACTCTATCAGGAGGACCTTCAACGAACAAATTCCTCAAAACATCAAGGATGGAGGTGATTGTAGCCACTATGCACTCTCTT
TTGATATTTTTACAGACCTCTCACAGAGATCAATGCCCTGTTGTGGCTGGTCTTCTGCTACAACTTGATATCTTGGTGGAATTGCAAAAGATGAGTATCTATCGTGAAGA
AGCGATGGATATCCTTATTTCATGCCAAAGAGACTCCAATTTCCAAACTGCTCAAATCTCTGCTGCTGAGATGATAGTGTCTTTCCAAGGAAGGTTTAGCACCTCTGGAC
AACCCTTAGCTAGGTATTTTCTTCTTGAGCGTGCTGGACCTTACTAA
Protein sequenceShow/hide protein sequence
MGMEDIDRDIKLGIGVIRPGNQHPAANFNTLSVKINKFVLLVTLIFFFFINVLWMGMEDIDRDVKLGIGVIRQGNQHPTATFNTLSGGPSTNKFLKTSRMEVIVATMHSL
LIFLQTSHRDQCPVVAGLLLQLDILVELQKMSIYREEAMDILISCQRDSNFQTAQISAAEMIVSFQGRFSTSGQPLARYFLLERAGPY