CuGenDBv2

Gene ID	Lag0007010
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RING-type E3 ubiquitin transferase
Genome location	chr6:48016631..48017585
RNA-Seq Expression	Lag0007010
Synteny	Lag0007010
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022933805.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X2 [Cucurbita moschata]

1.0e-37

48.73

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLLSVVKKKE+DVNKM LS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN
                                                                 HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+ LISCLRDS+
Subjt:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN

Query:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        F TAQISAAE IMSLQGRF+TSGQPLARYFLLERAG
Subjt:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

XP_023007456.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Cucurbita maxima]

5.5e-39

49.37

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLL+VVKKKE+DVNKMHLS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS
                                                                  HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+VLISCLRDS
Subjt:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS

Query:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        +F TAQISAAE IMSLQGRFSTSGQPLARYFLLERAG
Subjt:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

XP_023007466.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X2 [Cucurbita maxima]

4.2e-39

49.58

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLL+VVKKKE+DVNKMHLS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN
                                                                 HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+VLISCLRDS+
Subjt:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN

Query:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        F TAQISAAE IMSLQGRFSTSGQPLARYFLLERAG
Subjt:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

XP_023007474.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X3 [Cucurbita maxima]

5.5e-39

49.37

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLL+VVKKKE+DVNKMHLS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS
                                                                  HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+VLISCLRDS
Subjt:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS

Query:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        +F TAQISAAE IMSLQGRFSTSGQPLARYFLLERAG
Subjt:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

XP_023530379.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucurbita pepo subsp. pepo]

8.0e-38

48.73

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLL+VVKKKE+DVNKM LS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN
                                                                 HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+VLISCLRDS+
Subjt:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN

Query:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        F TAQISAAE IMSLQGRF+TSGQPLARYFLLERAG
Subjt:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F0S1 RING-type E3 ubiquitin transferase

6.6e-38

48.52

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLLSVVKKKE+DVNKM LS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS
                                                                  HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+ LISCLRDS
Subjt:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS

Query:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        +F TAQISAAE IMSLQGRF+TSGQPLARYFLLERAG
Subjt:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

A0A6J1F5V1 RING-type E3 ubiquitin transferase

5.0e-38

48.73

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLLSVVKKKE+DVNKM LS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN
                                                                 HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+ LISCLRDS+
Subjt:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN

Query:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        F TAQISAAE IMSLQGRF+TSGQPLARYFLLERAG
Subjt:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

A0A6J1L0K6 RING-type E3 ubiquitin transferase

2.7e-39

49.37

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLL+VVKKKE+DVNKMHLS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS
                                                                  HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+VLISCLRDS
Subjt:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS

Query:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        +F TAQISAAE IMSLQGRFSTSGQPLARYFLLERAG
Subjt:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

A0A6J1L0L5 RING-type E3 ubiquitin transferase

2.0e-39

49.58

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLL+VVKKKE+DVNKMHLS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN
                                                                 HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+VLISCLRDS+
Subjt:  --------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSN

Query:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        F TAQISAAE IMSLQGRFSTSGQPLARYFLLERAG
Subjt:  FQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

A0A6J1L515 RING-type E3 ubiquitin transferase

2.7e-39

49.37

Show/hide

Query:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------
        MD+VGSLL+VVKKKE+DVNKMHLS+KSAAVLLLRKI+  SKEG   VV VLAENA E+                                          
Subjt:  MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATEN------------------------------------------

Query:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS
                                                                  HRDQCPVVAGLLLQLDILVEP KMS Y EEAM+VLISCLRDS
Subjt:  ---------------------------------------------------------RHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDS

Query:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        +F TAQISAAE IMSLQGRFSTSGQPLARYFLLERAG
Subjt:  NFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

SwissProt top hits

e value

%identity

Alignment

C6L7U1 Putative E3 ubiquitin-protein ligase LIN-1

3.6e-09

45.83

Show/hide

Query:  VAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSNFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        VA LLLQLD+L EP+KMS Y EEA+  LI  L   +F   Q+ A + ++ L G  S+SG+     +LL+ AG
Subjt:  VAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSNFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

D1FP53 Putative E3 ubiquitin-protein ligase LIN

5.2e-08

44.44

Show/hide

Query:  VAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSNFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        VA LLLQLD+L EP+KMS Y EEA+  LI  L   +F   Q+ A + ++ L G  ++SG+      LL+ AG
Subjt:  VAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSNFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

D1FP57 Putative E3 ubiquitin-protein ligase LIN-2

3.6e-09

45.83

Show/hide

Query:  VAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSNFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG
        VA LLLQLD+L EP+KMS Y EEA+  LI  L   +F   Q+ A + ++ L G  S+SG+     +LL+ AG
Subjt:  VAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSNFQTAQISAAEMIMSLQGRFSTSGQPLARYFLLERAG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACATGGTCGGTTCTCTTTTGAGTGTTGTTAAGAAGAAAGAAGATGATGTAAATAAGATGCATTTGAGCTATAAATCCGCTGCAGTGCTTTTACTTAGAAAGATTGT
GGAAAGGAGTAAAGAAGGATTTTTGATTGTTGTTTATGTGCTTGCTGAAAATGCAACTGAAAACCGCCACAGAGATCAATGCCCTGTAGTGGCTGGTCTTCTGCTACAAC
TTGATATCTTGGTGGAACCGCAAAAGATGAGTACCTATCATGAAGAAGCGATGAATGTTCTTATTTCATGCCTCAGAGACTCCAATTTCCAAACTGCTCAAATTTCTGCT
GCTGAGATGATAATGTCTTTACAAGGAAGGTTTAGCACCTCCGGACAACCCTTAGCTAGGTATTTTCTTCTTGAGCGTGCTGGACCTTACTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDMVGSLLSVVKKKEDDVNKMHLSYKSAAVLLLRKIVERSKEGFLIVVYVLAENATENRHRDQCPVVAGLLLQLDILVEPQKMSTYHEEAMNVLISCLRDSNFQTAQISA
AEMIMSLQGRFSTSGQPLARYFLLERAGPY

Lag0007010 (gene) of Sponge gourd (AG-4) v1 genome