CuGenDBv2

Gene ID	Lag0007011
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RING-type E3 ubiquitin transferase
Genome location	chr6:48018638..48020047
RNA-Seq Expression	Lag0007011
Synteny	Lag0007011
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021867.1 putative E3 ubiquitin-protein ligase LIN-1, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.2e-32

55.11

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S
        LKAKQVEERI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                 
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S

Query:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        QCPVVAGLLLQLDILVE  KMSIYREEAMD LISCLRDS+F  AQISAAE I+SLQGRF+TSGQPLARYFLLERAG
Subjt:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

XP_023007456.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Cucurbita maxima]

8.4e-33

56.25

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S
        LKAKQVEERI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                 
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S

Query:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        QCPVVAGLLLQLDILVE  KMSIYREEAMDVLISCLRDS+F  AQISAAE I+SLQGRFSTSGQPLARYFLLERAG
Subjt:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

XP_023007466.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X2 [Cucurbita maxima]

6.4e-33

56.57

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ-----------------------------------------------SQ
        LKAKQVEERI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                Q
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ-----------------------------------------------SQ

Query:  CPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        CPVVAGLLLQLDILVE  KMSIYREEAMDVLISCLRDS+F  AQISAAE I+SLQGRFSTSGQPLARYFLLERAG
Subjt:  CPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

XP_023007474.1 putative E3 ubiquitin-protein ligase LIN-1 isoform X3 [Cucurbita maxima]

8.4e-33

56.25

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S
        LKAKQVEERI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                 
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S

Query:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        QCPVVAGLLLQLDILVE  KMSIYREEAMDVLISCLRDS+F  AQISAAE I+SLQGRFSTSGQPLARYFLLERAG
Subjt:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

XP_023530379.1 putative E3 ubiquitin-protein ligase LIN-1 [Cucurbita pepo subsp. pepo]

1.1e-32

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ-----------------------------------------------SQ
        LKAKQVEERI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                Q
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ-----------------------------------------------SQ

Query:  CPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        CPVVAGLLLQLDILVE  KMSIYREEAMDVLISCLRDS+F  AQISAAE I+SLQGRF+TSGQPLARYFLLERAG
Subjt:  CPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F0S1 RING-type E3 ubiquitin transferase

1.3e-31

54.55

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S
        LKAKQVE RI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                 
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S

Query:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        QCPVVAGLLLQLDILVE  KMSIYREEAMD LISCLRDS+F  AQISAAE I+SLQGRF+TSGQPLARYFLLERAG
Subjt:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

A0A6J1F5V1 RING-type E3 ubiquitin transferase

1.0e-31

54.86

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ-----------------------------------------------SQ
        LKAKQVE RI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                Q
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ-----------------------------------------------SQ

Query:  CPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        CPVVAGLLLQLDILVE  KMSIYREEAMD LISCLRDS+F  AQISAAE I+SLQGRF+TSGQPLARYFLLERAG
Subjt:  CPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

A0A6J1L0K6 RING-type E3 ubiquitin transferase

4.1e-33

56.25

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S
        LKAKQVEERI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                 
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S

Query:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        QCPVVAGLLLQLDILVE  KMSIYREEAMDVLISCLRDS+F  AQISAAE I+SLQGRFSTSGQPLARYFLLERAG
Subjt:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

A0A6J1L0L5 RING-type E3 ubiquitin transferase

3.1e-33

56.57

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ-----------------------------------------------SQ
        LKAKQVEERI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                Q
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ-----------------------------------------------SQ

Query:  CPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        CPVVAGLLLQLDILVE  KMSIYREEAMDVLISCLRDS+F  AQISAAE I+SLQGRFSTSGQPLARYFLLERAG
Subjt:  CPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

A0A6J1L515 RING-type E3 ubiquitin transferase

4.1e-33

56.25

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Query:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S
        LKAKQVEERI AVGI        W+ +   IADKADLALIL SFT+V+  +                                                 
Subjt:  LKAKQVEERIVAVGI-AEMHSRGWEVQIYPIADKADLALILESFTEVNRPQ------------------------------------------------S

Query:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        QCPVVAGLLLQLDILVE  KMSIYREEAMDVLISCLRDS+F  AQISAAE I+SLQGRFSTSGQPLARYFLLERAG
Subjt:  QCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

SwissProt top hits

e value

%identity

Alignment

C6L7U1 Putative E3 ubiquitin-protein ligase LIN-1

1.1e-08

44.3

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Query:  PQSQCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        P      VA LLLQLD+L E +KMSIYREEA++ LI  L   +F   Q+ A + ++ L G  S+SG+     +LL+ AG
Subjt:  PQSQCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

D1FP53 Putative E3 ubiquitin-protein ligase LIN

1.7e-07

43.04

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Query:  PQSQCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        P      VA LLLQLD+L E +KMSIYREEA++ LI  L   +F   Q+ A + ++ L G  ++SG+      LL+ AG
Subjt:  PQSQCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

D1FP57 Putative E3 ubiquitin-protein ligase LIN-2

1.1e-08

44.3

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Query:  PQSQCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG
        P      VA LLLQLD+L E +KMSIYREEA++ LI  L   +F   Q+ A + ++ L G  S+SG+     +LL+ AG
Subjt:  PQSQCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGCTCTTATGCCATTGAGATTGGTTTCGATAACAGAGAGGGGACAGAGGAAGCAGTTGCTCTTGATGAAGTAATGGGTTATCGTGCTTCTTTCTCTGACTTAACGAT
TCTTCTGTATTCAAGATCAATGGAAAGATTTTGGAAAGGAGTAAAGAAGGATCTTCGATTGTTGTTTCTGTGCTTGCTGAAAATGCAACTGAAAGTATTTTTGAAAGCCA
AGCAGGTTGAAGAGCGAATTGTTGCAGTTGGGATCGCTGAGATGCATTCAAGAGGATGGGAAGTGCAGATATATCCTATAGCTGATAAAGCAGACTTAGCTCTGATTTTG
GAAAGTTTCACAGAAGTGAACCGCCCACAGAGTCAATGCCCTGTAGTGGCTGGTCTTCTGCTACAACTTGATATCTTGGTGGAACTGCAAAAGATGAGTATCTATCGTGA
AGAAGCGATGGATGTCCTTATTTCATGCCTAAGAGACTCCAATTTCCAAGCTGCTCAAATTTCTGCTGCTGAGATGATAATATCTTTACAAGGAAGGTTTAGCACTTCCG
GACAACCCTTAGCTAGGTATTTTCTTCTTGAGCGTGCTGGACCTTACTAA

mRNA sequence

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Protein sequence

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MGSYAIEIGFDNREGTEEAVALDEVMGYRASFSDLTILLYSRSMERFWKGVKKDLRLLFLCLLKMQLKVFLKAKQVEERIVAVGIAEMHSRGWEVQIYPIADKADLALIL
ESFTEVNRPQSQCPVVAGLLLQLDILVELQKMSIYREEAMDVLISCLRDSNFQAAQISAAEMIISLQGRFSTSGQPLARYFLLERAGPY

Lag0007011 (gene) of Sponge gourd (AG-4) v1 genome