; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007089 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007089
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDEAD-box ATP-dependent RNA helicase
Genome locationchr6:48610169..48611766
RNA-Seq ExpressionLag0007089
SyntenyLag0007089
Gene Ontology termsGO:0042254 - ribosome biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR011545 - DEAD/DEAH box helicase domain
IPR014014 - RNA helicase, DEAD-box type, Q motif
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022946513.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata]1.0e-4392Show/hide
Query:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF+
Subjt:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

XP_022946514.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata]1.0e-4392Show/hide
Query:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF+
Subjt:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

XP_022975310.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima]1.0e-4392Show/hide
Query:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF+
Subjt:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

XP_022975312.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima]1.0e-4392Show/hide
Query:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF+
Subjt:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

XP_038890369.1 DEAD-box ATP-dependent RNA helicase 17-like [Benincasa hispida]1.3e-4387.85Show/hide
Query:  MNSSIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ
        M+ S K+MNE MK+TTKKMVKE EIFASCTFASLGL STLCDQLRDKMGFEVPT+VQAQAIPAILS RHVLVNAATGTGKT AYLVPIIHH+ KSDRRIQ
Subjt:  MNSSIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ

Query:  RADGTFA
        RADGTFA
Subjt:  RADGTFA

TrEMBL top hitse value%identityAlignment
A0A6J1DL75 DEAD-box ATP-dependent RNA helicase 171.1e-4386.92Show/hide
Query:  MNSSIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ
        MNSS KFMNEE+K T KKM +ESEIFASCTF+SLGLHSTLCDQL++KMGFEVPT+VQAQAI AILSGRHV+VNAATGTGKT AYLVPIIHHLQKS RRIQ
Subjt:  MNSSIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ

Query:  RADGTFA
        RADGTFA
Subjt:  RADGTFA

A0A6J1G419 DEAD-box ATP-dependent RNA helicase 17 isoform X24.9e-4492Show/hide
Query:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF+
Subjt:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

A0A6J1G427 DEAD-box ATP-dependent RNA helicase 17 isoform X14.9e-4492Show/hide
Query:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF+
Subjt:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

A0A6J1ICQ6 DEAD-box ATP-dependent RNA helicase 17 isoform X24.9e-4492Show/hide
Query:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF+
Subjt:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

A0A6J1IGD1 DEAD-box ATP-dependent RNA helicase 17 isoform X14.9e-4492Show/hide
Query:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        MNE MK TTKKMVKE EIFASCTFASLGLH+TLCD+LRDKMGFEVPT+VQAQAIPAILSGRHVLVNAATGTGKT AYLVPIIHHLQKSDRRIQRADGTF+
Subjt:  MNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

SwissProt top hitse value%identityAlignment
Q0DLB9 DEAD-box ATP-dependent RNA helicase 172.6e-2658.95Show/hide
Query:  KATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        K+   K   +  +FASC+F  LGLH TLC  L+DKMGF+ PT +QAQAIP  +SG+H+LV AATGTGKT AYL PI+H LQ  + R++R DGTFA
Subjt:  KATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

Q6NZQ2 Probable ATP-dependent RNA helicase DDX316.2e-1239.18Show/hide
Query:  EMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        E+ +T  K  +E ++F+   F  L LH  L   +   +     T VQ Q+IP +L GR  LV + TG+GKT AY VP++  LQ    +IQR+DG +A
Subjt:  EMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

Q7XJN0 DEAD-box ATP-dependent RNA helicase 172.6e-2658.65Show/hide
Query:  SIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRAD
        S +   +E K  +K    +S +FASC+F+SLGL + L DQL+++MGFE PT+VQAQAIP ILSGR VLVNA TGTGKT AYL P+IHHLQ    ++ R+ 
Subjt:  SIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRAD

Query:  GTFA
        GTFA
Subjt:  GTFA

Q86B47 Probable ATP-dependent RNA helicase CG86112.1e-1244.44Show/hide
Query:  KMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA
        K VKE+ IF     ++LGLH      L D +     T VQ + IP +L G+ VLV + TG+GKT AY +P++  LQK   RIQR DG  A
Subjt:  KMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFA

Q9H8H2 Probable ATP-dependent RNA helicase DDX315.6e-1337.38Show/hide
Query:  SSIKFMNEEMKATTKKMVK--ESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ
        SS+   N ++    + +VK  + ++F S  F  LGLH  L   +   +     T VQ Q+IP +L GR  LV + TG+GKT AY +P++  LQ  + +IQ
Subjt:  SSIKFMNEEMKATTKKMVK--ESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQ

Query:  RADGTFA
        R+DG +A
Subjt:  RADGTFA

Arabidopsis top hitse value%identityAlignment
AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.9e-1233.33Show/hide
Query:  NEEMKATTKKMVKE--SEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHL----QKSDRRIQRA
        N++MK   +K   E  S +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI+ G   ++ + TG+GKT AYL+PI+  +    +KS       
Subjt:  NEEMKATTKKMVKE--SEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHL----QKSDRRIQRA

Query:  DGTFAYQASNFNITNPSSKSNNGIFRKVE--VGEGHNHIVRVLEHVTLGRTRSMTQKQLEERVETTEKDIAM-LKESVQQIEKGTK
        D     QA    I  PS +    I R+VE  +G  H  +V+ L    +G    M Q   EE ++  +  I +     + +I KG K
Subjt:  DGTFAYQASNFNITNPSSKSNNGIFRKVE--VGEGHNHIVRVLEHVTLGRTRSMTQKQLEERVETTEKDIAM-LKESVQQIEKGTK

AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.8e-2758.65Show/hide
Query:  SIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRAD
        S +   +E K  +K    +S +FASC+F+SLGL + L DQL+++MGFE PT+VQAQAIP ILSGR VLVNA TGTGKT AYL P+IHHLQ    ++ R+ 
Subjt:  SIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRAD

Query:  GTFA
        GTFA
Subjt:  GTFA

AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.3e-0941.33Show/hide
Query:  TFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADG
        TF   G  S +   ++ K  +E PT +Q QA+P +LSGR V+  A TG+GKTAA+++P+I H+      +QR +G
Subjt:  TFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADG

AT3G02065.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein3.0e-0946.67Show/hide
Query:  TFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPII------HHLQKSDRR
        TF S GL   L   L +  G++ PT +Q QAIPA L+G+ +L +A TG+GKTA++LVPII      H    SD+R
Subjt:  TFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPII------HHLQKSDRR

AT4G34910.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein3.5e-1041.38Show/hide
Query:  EEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSD
        EE +   ++  ++ E  A  +F  LGL S L   L  K G E PT++Q  AIP IL G+ V+  A TG+GKT AYL+P++  L  +D
Subjt:  EEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCAGCATCAAATTTATGAACGAAGAGATGAAGGCGACGACGAAGAAAATGGTTAAAGAGAGTGAGATTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTTTGCA
CTCTACTTTATGTGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCAACCATTGTGCAGGCTCAAGCAATACCGGCTATTTTATCTGGGCGTCACGTTCTTGTTAATG
CGGCCACGGGCACTGGCAAAACTGCCGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCTGATCGTAGGATTCAACGAGCCGATGGAACTTTCGCATATCAAGCT
TCAAATTTCAACATTACAAATCCATCCAGCAAGTCCAACAATGGCATTTTTCGCAAAGTGGAAGTTGGAGAAGGGCATAATCACATTGTGAGAGTACTGGAGCACGTCAC
CCTAGGGAGAACACGAAGCATGACTCAGAAACAGTTAGAAGAACGTGTGGAAACAACTGAGAAGGATATTGCCATGTTGAAGGAATCGGTCCAGCAGATTGAGAAGGGAA
CAAAGAGGCTGTCGTGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAGCAGCATCAAATTTATGAACGAAGAGATGAAGGCGACGACGAAGAAAATGGTTAAAGAGAGTGAGATTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTTTGCA
CTCTACTTTATGTGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCAACCATTGTGCAGGCTCAAGCAATACCGGCTATTTTATCTGGGCGTCACGTTCTTGTTAATG
CGGCCACGGGCACTGGCAAAACTGCCGCGTATTTGGTTCCAATCATCCATCACTTGCAGAAGTCTGATCGTAGGATTCAACGAGCCGATGGAACTTTCGCATATCAAGCT
TCAAATTTCAACATTACAAATCCATCCAGCAAGTCCAACAATGGCATTTTTCGCAAAGTGGAAGTTGGAGAAGGGCATAATCACATTGTGAGAGTACTGGAGCACGTCAC
CCTAGGGAGAACACGAAGCATGACTCAGAAACAGTTAGAAGAACGTGTGGAAACAACTGAGAAGGATATTGCCATGTTGAAGGAATCGGTCCAGCAGATTGAGAAGGGAA
CAAAGAGGCTGTCGTGGAAGTGA
Protein sequenceShow/hide protein sequence
MNSSIKFMNEEMKATTKKMVKESEIFASCTFASLGLHSTLCDQLRDKMGFEVPTIVQAQAIPAILSGRHVLVNAATGTGKTAAYLVPIIHHLQKSDRRIQRADGTFAYQA
SNFNITNPSSKSNNGIFRKVEVGEGHNHIVRVLEHVTLGRTRSMTQKQLEERVETTEKDIAMLKESVQQIEKGTKRLSWK