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Lag0007245 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007245
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationScvUqRz_1244_HRSCAF_2115:39081..39727
RNA-Seq ExpressionLag0007245
SyntenyLag0007245
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1199680.1 hypothetical protein CJ030_MR0G017069 [Morella rubra]1.0e-0957.14Show/hide
Query:  WLGRVSFRFLIFEERDEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSP
        WL  V + + +    D  L+      VY+K WRIRRESSELIRFGLLWKI+DLVAEKGV+  P
Subjt:  WLGRVSFRFLIFEERDEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSP

KAB8477474.1 hypothetical protein FH972_025340 [Carpinus fangiana]1.3e-1735.42Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVS----------FRFLIFEER-----------------------------------
        +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WLGR +            FL  E R                                   
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVS----------FRFLIFEER-----------------------------------

Query:  ------------DEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT
                    D  ++S     V  + WRI R+ + L RFGLLW+++DLVA KGV++  P L+ HL    G WLL G+SG  F+V+  G T
Subjt:  ------------DEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT

KAF3452148.1 hypothetical protein FNV43_RR08246 [Rhamnella rubrinervis]4.8e-5268.55Show/hide
Query:  RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVSFRFLIFE-------------------------------ERDEGLASVRPLIVYDKEWRIR
        RVLAKLSHTRSRHFERVLAMYTKPRGHND  LELWLGRVSFRFLIFE                                 D  L+      VY+KEWRIR
Subjt:  RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVSFRFLIFE-------------------------------ERDEGLASVRPLIVYDKEWRIR

Query:  RESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLT
        RESSELIRF LLWKI+DLVAEKGVAWSPPCLQEHLPGFRGWLL GVSG+DFLVEPDG T
Subjt:  RESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLT

KAF9601036.1 hypothetical protein IFM89_015021 [Coptis chinensis]8.6e-0929.53Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP-RGHNDETLELWLGR---------------------------------VSFRFLIFEE-------RDEGL
        IGGGGY+ L KL   RSR  +R+ +M  K   GH    L LWLG+                                 V+ +  I +E         E L
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKP-RGHNDETLELWLGR---------------------------------VSFRFLIFEE-------RDEGL

Query:  ASVR--PLIVYDKE---------------WRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRG--WLLEGVSGIDFLVEPDGL
        A +R   ++  D +               W+  R+   LI+FGLLW++HDLV + G+ + PP L+      +   WLL G+ G  +LV  DGL
Subjt:  ASVR--PLIVYDKE---------------WRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRG--WLLEGVSGIDFLVEPDGL

KAF9618544.1 hypothetical protein IFM89_002239 [Coptis chinensis]1.2e-1590Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPR-GHNDETLELWLGRVSFRF
        IGGGGYRVLAKL HTRSRHFERVLAMYTKPR GHND  LELWLG+VSFRF
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPR-GHNDETLELWLGRVSFRF

TrEMBL top hitse value%identityAlignment
A0A2Z6JJR3 RNA-dependent RNA polymerase9.3e-0946.77Show/hide
Query:  WRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGL
        W +R+ + EL+RFG+LWK +D VA  G+ W P  L E      GW+L G SG DF+V   GL
Subjt:  WRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGL

A0A2Z6JSN1 RNA-dependent RNA polymerase9.3e-0946.77Show/hide
Query:  WRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGL
        W +R+ + EL+RFG+LWK +D VA  G+ W P  L E      GW+L G SG DF+V   GL
Subjt:  WRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGL

A0A482F2N2 RNA-dependent RNA polymerase9.3e-0946.77Show/hide
Query:  WRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGL
        W +R+ + EL+RFG+LWK +D VA  G+ W P  L E      GW+L G SG DF+V   GL
Subjt:  WRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGL

A0A5N6L0Z4 Uncharacterized protein6.4e-1835.42Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVS----------FRFLIFEER-----------------------------------
        +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WLGR +            FL  E R                                   
Subjt:  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVS----------FRFLIFEER-----------------------------------

Query:  ------------DEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT
                    D  ++S     V  + WRI R+ + L RFGLLW+++DLVA KGV++  P L+ HL    G WLL G+SG  F+V+  G T
Subjt:  ------------DEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVSGIDFLVEPDGLT

A0A6A1UKL6 Uncharacterized protein4.9e-1057.14Show/hide
Query:  WLGRVSFRFLIFEERDEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSP
        WL  V + + +    D  L+      VY+K WRIRRESSELIRFGLLWKI+DLVAEKGV+  P
Subjt:  WLGRVSFRFLIFEERDEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGA
GACATTAGAATTGTGGCTTGGTAGAGTGAGCTTTCGCTTCCTTATCTTCGAGGAACGGGATGAAGGATTGGCTTCGGTACGTCCATTGATTGTCTATGATAAAGAATGGA
GGATCAGACGCGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAGATCCATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACAC
CTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTTCTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGC
ACCTGGGGGAAGGACTACCCTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGA
GACATTAGAATTGTGGCTTGGTAGAGTGAGCTTTCGCTTCCTTATCTTCGAGGAACGGGATGAAGGATTGGCTTCGGTACGTCCATTGATTGTCTATGATAAAGAATGGA
GGATCAGACGCGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAGATCCATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACAC
CTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTTCTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGC
ACCTGGGGGAAGGACTACCCTTTTTTGA
Protein sequenceShow/hide protein sequence
MIGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVSFRFLIFEERDEGLASVRPLIVYDKEWRIRRESSELIRFGLLWKIHDLVAEKGVAWSPPCLQEH
LPGFRGWLLEGVSGIDFLVEPDGLTGFERDHHKTLGAPGGRTTLF