; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007273 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007273
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationScvUqRz_1244_HRSCAF_2115:120340..121296
RNA-Seq ExpressionLag0007273
SyntenyLag0007273
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMP12385.1 pentatricopeptide repeat-containing protein [Corchorus olitorius]1.2e-0982.98Show/hide
Query:  ALLTSLTSYRSWLIEQVRVTARRLGSSVTLRGGAPDPYKRRMIKSAT
        AL TSLTSYRSWLIE VRVTAR+LGSSVTL  GAPDPY  RMIKS T
Subjt:  ALLTSLTSYRSWLIEQVRVTARRLGSSVTLRGGAPDPYKRRMIKSAT
TrEMBL top hitse value%identityAlignment
A0A1R3KZ63 Pentatricopeptide repeat-containing protein5.9e-1082.98Show/hide
Query:  ALLTSLTSYRSWLIEQVRVTARRLGSSVTLRGGAPDPYKRRMIKSAT
        AL TSLTSYRSWLIE VRVTAR+LGSSVTL  GAPDPY  RMIKS T
Subjt:  ALLTSLTSYRSWLIEQVRVTARRLGSSVTLRGGAPDPYKRRMIKSAT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCGACCCACAGAACCCTTATAAAAGGACACCTTATTCAAAAACGAAAGTCACCCAAGCCCCAGAACGGAAGTCTTGATCCCACTTCCTGCTTCCACCGAAAGGA
AGTGAACCACCTTTTCTTCGGGAAGGCAAAGTTGGAAGAAAGAAAAGAAGAAGCTACTTCGTCATCCCTCAAAGATAGATCTATTGTTCTAATTAGTTGGGCTTTTCTGC
TGGAAGGTATTCTCATGTGGGTGCGTACTGCTCTTTTGACTAGTCTGACTTCTTATCGGTCGTGGCTGATTGAGCAGGTTCGCGTAACTGCGAGACGATTAGGTTCGTCC
GTGACGCTTCGGGGCGGTGCCCCGGATCCCTACAAGCGGAGGATGATCAAATCCGCTACACCCACCCTCAGCCCCGATCCTGAATCGACTTTAGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGCCGACCCACAGAACCCTTATAAAAGGACACCTTATTCAAAAACGAAAGTCACCCAAGCCCCAGAACGGAAGTCTTGATCCCACTTCCTGCTTCCACCGAAAGGA
AGTGAACCACCTTTTCTTCGGGAAGGCAAAGTTGGAAGAAAGAAAAGAAGAAGCTACTTCGTCATCCCTCAAAGATAGATCTATTGTTCTAATTAGTTGGGCTTTTCTGC
TGGAAGGTATTCTCATGTGGGTGCGTACTGCTCTTTTGACTAGTCTGACTTCTTATCGGTCGTGGCTGATTGAGCAGGTTCGCGTAACTGCGAGACGATTAGGTTCGTCC
GTGACGCTTCGGGGCGGTGCCCCGGATCCCTACAAGCGGAGGATGATCAAATCCGCTACACCCACCCTCAGCCCCGATCCTGAATCGACTTTAGACTAG
Protein sequenceShow/hide protein sequence
MWPTHRTLIKGHLIQKRKSPKPQNGSLDPTSCFHRKEVNHLFFGKAKLEERKEEATSSSLKDRSIVLISWAFLLEGILMWVRTALLTSLTSYRSWLIEQVRVTARRLGSS
VTLRGGAPDPYKRRMIKSATPTLSPDPESTLD