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Lag0007309 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007309
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationScvUqRz_1250_HRSCAF_2122:72729..76566
RNA-Seq ExpressionLag0007309
SyntenyLag0007309
Gene Ontology termsGO:0015031 - protein transport (biological process)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG99998.1 hypothetical protein Prudu_009882, partial [Prunus dulcis]1.0e-2990.41Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKI
        MIEE+EALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERAR+VAKGFTQTY I+YLETFAPVAKL  +
Subjt:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKI

KAA0059498.1 hypothetical protein E6C27_scaffold48829G00010 [Cucumis melo var. makuwa]4.6e-3366.67Show/hide
Query:  VSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQ
        + R H PIVFFF    F  VSTFGIGLT  GPTKLVSRPPL IKLG     ++ L S  +        V+    +VAAADM+TI DGPRGEELEPD NPQ
Subjt:  VSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQ

Query:  ASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEER
        AS+LQ+P YLAIGKSPSV AAPNTGGSSASWGQQEEER
Subjt:  ASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEER

TYK04334.1 hypothetical protein E5676_scaffold84043G00010 [Cucumis melo var. makuwa]4.6e-3366.67Show/hide
Query:  VSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQ
        + R H PIVFFF    F  VSTFGIGLT  GPTKLVSRPPL IKLG     ++ L S  +        V+    +VAAADM+TI DGPRGEELEPD NPQ
Subjt:  VSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQ

Query:  ASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEER
        AS+LQ+P YLAIGKSPSV AAPNTGGSSASWGQQEEER
Subjt:  ASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEER

VVA33529.1 PREDICTED: IST1 [Prunus dulcis]1.2e-2893.06Show/hide
Query:  KEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRP
        KEKFLIEGLM RVF WSHDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVS FGIGLT  GPTKLVSRP
Subjt:  KEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRP

WP_131796664.1 hypothetical protein [Candidatus Frankia datiscae]1.5e-3694.94Show/hide
Query:  KNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGH
        KNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERAR+VAKGFTQTYGIDYLETFAP+AKL  IPYESFCQLQLTDLGH
Subjt:  KNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGH

TrEMBL top hitse value%identityAlignment
A0A2N9GHF6 Reverse transcriptase Ty1/copia-type domain-containing protein7.0e-6494.7Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGHCISSMSKRPFFM
        MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERAR+VA+GFTQTY IDYLETFAPVAKL  IPYESFCQLQLTDLGHCISSMSKRPFFM
Subjt:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGHCISSMSKRPFFM

Query:  ETSTNRSVARSGSLTETGTRHGKARSTSSSPE
        ETS NRSVARSGSLTETGTRHGKARS SSSPE
Subjt:  ETSTNRSVARSGSLTETGTRHGKARSTSSSPE

A0A4Y1R738 Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment)5.1e-3090.41Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKI
        MIEE+EALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERAR+VAKGFTQTY I+YLETFAPVAKL  +
Subjt:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKI

A0A5A7UWF6 Uncharacterized protein2.2e-3366.67Show/hide
Query:  VSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQ
        + R H PIVFFF    F  VSTFGIGLT  GPTKLVSRPPL IKLG     ++ L S  +        V+    +VAAADM+TI DGPRGEELEPD NPQ
Subjt:  VSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQ

Query:  ASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEER
        AS+LQ+P YLAIGKSPSV AAPNTGGSSASWGQQEEER
Subjt:  ASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEER

A0A5D3BZC3 Uncharacterized protein2.2e-3366.67Show/hide
Query:  VSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQ
        + R H PIVFFF    F  VSTFGIGLT  GPTKLVSRPPL IKLG     ++ L S  +        V+    +VAAADM+TI DGPRGEELEPD NPQ
Subjt:  VSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELEPDNNPQ

Query:  ASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEER
        AS+LQ+P YLAIGKSPSV AAPNTGGSSASWGQQEEER
Subjt:  ASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEER

A0A5E4G1B8 PREDICTED: IST15.6e-2993.06Show/hide
Query:  KEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRP
        KEKFLIEGLM RVF WSHDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVS FGIGLT  GPTKLVSRP
Subjt:  KEKFLIEGLMFRVFCWSHDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVSTFGIGLT--GPTKLVSRP

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.1e-1147.3Show/hide
Query:  EMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKIPY
        E+ A K N+TW +   P  K  V  RWV+++K+   G+  R  ARLVA+GFTQ Y IDY ETFAPVA++    +
Subjt:  EMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKIPY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.4e-1452Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKI
        M EEME+L+KN T++L+ LP+GKR + C+WV+ LK   D  + R  ARLV KGF Q  GID+ E F+PV K+  I
Subjt:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKI

P92520 Uncharacterized mitochondrial protein AtMg008202.1e-1241.18Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGHCISSMSKRPF
        M EE++AL +N TW L+  P  +  +GC+WV+  K  +DG+++R  ARLVAKGF Q  GI ++ET++PV +   I        QL ++G  I+ M K  F
Subjt:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGHCISSMSKRPF

Query:  FM
         M
Subjt:  FM

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.0e-1250Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRT-VGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKI
        M  E+ A   N TW+L+  P    T VGCRW++T K+ +DGS+ R  ARLVAKG+ Q  G+DY ETF+PV K   I
Subjt:  MIEEMEALKKNDTWELITLPRGKRT-VGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.7e-1150Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRT-VGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKI
        M  E+ A   N TW+L+  P    T VGCRW++T K  +DGS+ R  ARLVAKG+ Q  G+DY ETF+PV K   I
Subjt:  MIEEMEALKKNDTWELITLPRGKRT-VGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.5e-1853.33Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKI
        M +E+ A++   TWE+ TLP  K+ +GC+WVY +K+ +DG+IER  ARLVAKG+TQ  GID++ETF+PV KL  +
Subjt:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKI

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.5e-1341.18Show/hide
Query:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGHCISSMSKRPF
        M EE++AL +N TW L+  P  +  +GC+WV+  K  +DG+++R  ARLVAKGF Q  GI ++ET++PV +   I        QL ++G  I+ M K  F
Subjt:  MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIER--ARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGHCISSMSKRPF

Query:  FM
         M
Subjt:  FM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGAAGAAATGGAGGCTCTAAAGAAGAACGACACTTGGGAACTGATCACGTTACCAAGAGGCAAACGTACGGTTGGCTGCAGGTGGGTATATACCCTGAAACACAA
AGCTGATGGCTCTATCGAGAGGGCTCGTCTTGTGGCGAAAGGTTTCACACAAACCTATGGCATCGATTATCTCGAGACGTTTGCTCCTGTGGCCAAACTCAAAAAAATTC
CATACGAGTCATTCTGTCAGTTGCAGCTAACAGATCTTGGTCACTGCATCAGCTCGATGTCAAAAAGGCCTTTCTTCATGGAGACCTCCACGAATAGATCCGTAGCCCGC
TCTGGGTCTTTAACCGAAACTGGGACTAGGCATGGAAAAGCTCGATCAACGTCCTCCTCTCCCGAAGGTGCGGAAGAAGAAAGAAAAAGGTATAAGCAGAGGCTTTTTCT
AAAGATAAAGGCTGGAAAGATAAAGGGCAATAAAGAGTTCCGATTGGTAATACATACGAGGCTTAGGTTTTTTTTCCTCAACCGGGAATCTTGCCCGACCCCGAGCAAGG
GCCTAATTCACCTATTCAAAGAAAGCGGTCCTGAGCGGATGATCTTCGGATTCCATAACAGCACGTCCGGCGGCTATTCAAATGGATCCAGTTCCTACCCGCCCGCAACC
CTTCTTGGGAATGGAATCCTATCGACTGGTGCATCCCCACTACCGCCCCTGACAAACTTTCTGTCTAACTGTCGAGATCTCTTGCTCGATGTGCTCGTTACTCGTTTAGC
TCGGCAAGCAATCAAATCTTCAAAAGGATGGAGTTCCAGCAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGGCGTACGGGGATCTTT
CGATCACTCTGTTAGATCCAAGGCACGTCTTCACTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCTGC
TGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGGTATCGCGACCCCATCTGCCTATTGTCTTCTTCTTTGAGTTTCGCCTGTTTTCTAT
CGTCTCGACTTTCGGAATTGGCCTGACCGGTCCTACGAAGCTTGTCTCACGCCCCCCTCTCACAATAAAGCTAGGGTGTCAACCCGTCACCGAGAATGGCCTATGTTCCA
AGAACCAATGCTACCCAGCACCTACCACTGAAGTTAGCCTTCGTGATTCAGATGTTGCTGCTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGGCGAAGAGCTTGAA
CCAGATAACAATCCCCAAGCTTCTGTTCTTCAACAACCGGAGTATTTAGCTATTGGAAAATCGCCTTCGGTTAACGCAGCCCCTAATACCGGCGGTAGCTCTGCCTCATG
GGGACAGCAGGAAGAGGAAAGAAGACAAGTTCGCGCTTTTTCCTTAGAAGGAAGGTCCTCAAAGCCTCTTCATTCCAATGATCATGATGAAGAATCCAATAGCTCCTCTC
AGGACCCACAATCATCGAGATTTGAGAAAGATTTTAAACCGAAGCCTCCGAACAAGGCAGCACCTGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAGAAGAAATGGAGGCTCTAAAGAAGAACGACACTTGGGAACTGATCACGTTACCAAGAGGCAAACGTACGGTTGGCTGCAGGTGGGTATATACCCTGAAACACAA
AGCTGATGGCTCTATCGAGAGGGCTCGTCTTGTGGCGAAAGGTTTCACACAAACCTATGGCATCGATTATCTCGAGACGTTTGCTCCTGTGGCCAAACTCAAAAAAATTC
CATACGAGTCATTCTGTCAGTTGCAGCTAACAGATCTTGGTCACTGCATCAGCTCGATGTCAAAAAGGCCTTTCTTCATGGAGACCTCCACGAATAGATCCGTAGCCCGC
TCTGGGTCTTTAACCGAAACTGGGACTAGGCATGGAAAAGCTCGATCAACGTCCTCCTCTCCCGAAGGTGCGGAAGAAGAAAGAAAAAGGTATAAGCAGAGGCTTTTTCT
AAAGATAAAGGCTGGAAAGATAAAGGGCAATAAAGAGTTCCGATTGGTAATACATACGAGGCTTAGGTTTTTTTTCCTCAACCGGGAATCTTGCCCGACCCCGAGCAAGG
GCCTAATTCACCTATTCAAAGAAAGCGGTCCTGAGCGGATGATCTTCGGATTCCATAACAGCACGTCCGGCGGCTATTCAAATGGATCCAGTTCCTACCCGCCCGCAACC
CTTCTTGGGAATGGAATCCTATCGACTGGTGCATCCCCACTACCGCCCCTGACAAACTTTCTGTCTAACTGTCGAGATCTCTTGCTCGATGTGCTCGTTACTCGTTTAGC
TCGGCAAGCAATCAAATCTTCAAAAGGATGGAGTTCCAGCAAAACCCTTTCTAAGGATGAGGACGGTAGTTCGGGAGTTCGCTCGAAAGAACTGGCGTACGGGGATCTTT
CGATCACTCTGTTAGATCCAAGGCACGTCTTCACTCTCGAACAAAGAAGATATGCACCAAAAAACAAAGAGAAGTTTTTGATTGAGGGATTGATGTTTAGGGTTTTCTGC
TGGAGCCATGATTTCCGTCTCCGCAATGGTGATCCAATGCATGCGCCTATTTGGGTATCGCGACCCCATCTGCCTATTGTCTTCTTCTTTGAGTTTCGCCTGTTTTCTAT
CGTCTCGACTTTCGGAATTGGCCTGACCGGTCCTACGAAGCTTGTCTCACGCCCCCCTCTCACAATAAAGCTAGGGTGTCAACCCGTCACCGAGAATGGCCTATGTTCCA
AGAACCAATGCTACCCAGCACCTACCACTGAAGTTAGCCTTCGTGATTCAGATGTTGCTGCTGCTGACATGCAAACCATTGAAGATGGTCCTCGGGGCGAAGAGCTTGAA
CCAGATAACAATCCCCAAGCTTCTGTTCTTCAACAACCGGAGTATTTAGCTATTGGAAAATCGCCTTCGGTTAACGCAGCCCCTAATACCGGCGGTAGCTCTGCCTCATG
GGGACAGCAGGAAGAGGAAAGAAGACAAGTTCGCGCTTTTTCCTTAGAAGGAAGGTCCTCAAAGCCTCTTCATTCCAATGATCATGATGAAGAATCCAATAGCTCCTCTC
AGGACCCACAATCATCGAGATTTGAGAAAGATTTTAAACCGAAGCCTCCGAACAAGGCAGCACCTGGGTAA
Protein sequenceShow/hide protein sequence
MIEEMEALKKNDTWELITLPRGKRTVGCRWVYTLKHKADGSIERARLVAKGFTQTYGIDYLETFAPVAKLKKIPYESFCQLQLTDLGHCISSMSKRPFFMETSTNRSVAR
SGSLTETGTRHGKARSTSSSPEGAEEERKRYKQRLFLKIKAGKIKGNKEFRLVIHTRLRFFFLNRESCPTPSKGLIHLFKESGPERMIFGFHNSTSGGYSNGSSSYPPAT
LLGNGILSTGASPLPPLTNFLSNCRDLLLDVLVTRLARQAIKSSKGWSSSKTLSKDEDGSSGVRSKELAYGDLSITLLDPRHVFTLEQRRYAPKNKEKFLIEGLMFRVFC
WSHDFRLRNGDPMHAPIWVSRPHLPIVFFFEFRLFSIVSTFGIGLTGPTKLVSRPPLTIKLGCQPVTENGLCSKNQCYPAPTTEVSLRDSDVAAADMQTIEDGPRGEELE
PDNNPQASVLQQPEYLAIGKSPSVNAAPNTGGSSASWGQQEEERRQVRAFSLEGRSSKPLHSNDHDEESNSSSQDPQSSRFEKDFKPKPPNKAAPG