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Lag0007500 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007500
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr9:196574..197693
RNA-Seq ExpressionLag0007500
SyntenyLag0007500
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KJB65286.1 hypothetical protein B456_010G088000 [Gossypium raimondii]5.6e-1228.19Show/hide
Query:  WNSWRLTDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRICRGKLIRYPVPFQRGEAASYV
        + S   T EEV+ V   EG   +  G L              D C    +F ++  E G  ++ YE  M   W   Y I   +L+        G A   +
Subjt:  WNSWRLTDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRICRGKLIRYPVPFQRGEAASYV

Query:  Y---------GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEG-TGEQQGEQYGDWLRAGVGLGESGRR
                  G    +RI+V + +  PLRR  +L D++G E    + YERLPDFCYECG +GH  + C +  E         Q+G WLRA +      R 
Subjt:  Y---------GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEG-TGEQQGEQYGDWLRAGVGLGESGRR

Query:  VQKGGVDSVAGRKLETTKLSPEGQVLHATKP---EKVGKESVGVSGEVVEVQIIEQREH
        +++ GV+ V   K +  ++  E Q+    +    E+ GKE  G    +     +E+R H
Subjt:  VQKGGVDSVAGRKLETTKLSPEGQVLHATKP---EKVGKESVGVSGEVVEVQIIEQREH

MBA0786883.1 hypothetical protein [Gossypium trilobum]1.2e-1129.65Show/hide
Query:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRI---CRGKLIRYPVPFQRGEAASYVY--
        T EEV+ V   EG   +  G +              D C    +F ++  E G  ++ YE  M   W   Y I      + +   +    GE  +  +  
Subjt:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRI---CRGKLIRYPVPFQRGEAASYVY--

Query:  ---GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTG-EQQGEQYGDWLRAGVGLGESGRRVQKGGV
           G    +R+++ + + RPLRR  RL D+ G E    + YERLPDF YECG +GH+ ++C +  E  G   Q  Q+G W+RA  G     R +++ GV
Subjt:  ---GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTG-EQQGEQYGDWLRAGVGLGESGRRVQKGGV

PPD96872.1 hypothetical protein GOBAR_DD06140 [Gossypium barbadense]1.9e-1227.8Show/hide
Query:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRI---------------CRGKLIRYPVPF
        T EEV+ V   EGT  +  G L              D C    +F ++  + G  ++ YE  M   W   Y I                 G+L+      
Subjt:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRI---------------CRGKLIRYPVPF

Query:  QRGEAASYVYGTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEG-TGEQQGEQYGDWLRAGVGLGESGRR
        + G    ++       RI+V + +  PLRR  +L D++G E    + YERLPDFCYECG +GH+ + C +  E         Q+G WLRA +G     R 
Subjt:  QRGEAASYVYGTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEG-TGEQQGEQYGDWLRAGVGLGESGRR

Query:  VQKGGVDSVAGRKLETTKLSPEGQVL---HATKPEKVGKESVGVSGEVVEVQIIEQREH
        +++ GV+ V   K +  ++  E Q+     + + E+ GKE  G    +     +E+R H
Subjt:  VQKGGVDSVAGRKLETTKLSPEGQVL---HATKPEKVGKESVGVSGEVVEVQIIEQREH

PPE01936.1 hypothetical protein GOBAR_DD01012 [Gossypium barbadense]7.3e-1230.24Show/hide
Query:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRICRGKLIRYP---VPFQRGEAASYVY--
        T +EV+ V   EG   +  G L              D C    +F ++  E G   + YE  +   W   Y +    + R     +    GE  +  +  
Subjt:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRICRGKLIRYP---VPFQRGEAASYVY--

Query:  ---GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTGEQ-QGEQYGDWLRAGVGLGESGRRVQKGGVD
           G    +RI+V++ + +PLRR  +L D EG E    + YERLPDFCY CG +GHS R C    EG G+     QYG WLR  +      R +++ GV+
Subjt:  ---GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTGEQ-QGEQYGDWLRAGVGLGESGRRVQKGGVD

Query:  SVAGR
         V  +
Subjt:  SVAGR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]3.2e-1551.95Show/hide
Query:  GLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTGEQQGEQYGDWLRA
        G  +R+RV + + +PLRRG +L++ +GK+  CP+ YE+LPDFCYECG +GHS REC    +       EQYGDWLRA
Subjt:  GLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTGEQQGEQYGDWLRA

TrEMBL top hitse value%identityAlignment
A0A0D2UBB3 CCHC-type domain-containing protein2.7e-1228.19Show/hide
Query:  WNSWRLTDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRICRGKLIRYPVPFQRGEAASYV
        + S   T EEV+ V   EG   +  G L              D C    +F ++  E G  ++ YE  M   W   Y I   +L+        G A   +
Subjt:  WNSWRLTDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRICRGKLIRYPVPFQRGEAASYV

Query:  Y---------GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEG-TGEQQGEQYGDWLRAGVGLGESGRR
                  G    +RI+V + +  PLRR  +L D++G E    + YERLPDFCYECG +GH  + C +  E         Q+G WLRA +      R 
Subjt:  Y---------GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEG-TGEQQGEQYGDWLRAGVGLGESGRR

Query:  VQKGGVDSVAGRKLETTKLSPEGQVLHATKP---EKVGKESVGVSGEVVEVQIIEQREH
        +++ GV+ V   K +  ++  E Q+    +    E+ GKE  G    +     +E+R H
Subjt:  VQKGGVDSVAGRKLETTKLSPEGQVLHATKP---EKVGKESVGVSGEVVEVQIIEQREH

A0A6J1D765 uncharacterized protein LOC1110179021.5e-1551.95Show/hide
Query:  GLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTGEQQGEQYGDWLRA
        G  +R+RV + + +PLRRG +L++ +GK+  CP+ YE+LPDFCYECG +GHS REC    +       EQYGDWLRA
Subjt:  GLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTGEQQGEQYGDWLRA

A0A7J8Q9S0 CCHC-type domain-containing protein (Fragment)1.0e-1130.57Show/hide
Query:  VFFLIGCECGSFLECYEGSMESTWGNTYRI---CRGKLIRYPVPFQRGEAASYVY-----GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYER
        +F ++  E G  +E YE      W   Y        + +   V    GE  +  +     G    +RI+V + + +PLRR  +L D+EG E    + YER
Subjt:  VFFLIGCECGSFLECYEGSMESTWGNTYRI---CRGKLIRYPVPFQRGEAASYVY-----GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYER

Query:  LPDFCYECGCLGHSRRECGVVGEGTG-EQQGEQYGDWLRAGVGLGESGRRVQKGGVDSVAGRKLETTKLSPEGQVLHATKPEKV---GKESVG
        LPDFCY CG +GHS + C    EG+   +   QYG W+RA + +    R +++ GV+ V   K +      E Q     + E++   GKE +G
Subjt:  LPDFCYECGCLGHSRRECGVVGEGTG-EQQGEQYGDWLRAGVGLGESGRRVQKGGVDSVAGRKLETTKLSPEGQVLHATKPEKV---GKESVG

A0A7J8Y4F2 CCHC-type domain-containing protein2.3e-1129.7Show/hide
Query:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRI---CRGKLIRYPVPFQRGEAASYVY--
        T EEV+ V   EG   +  G L              D C    +F ++  E G  ++ YE  M   W   Y I      + +   +    GE  +  +  
Subjt:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRI---CRGKLIRYPVPFQRGEAASYVY--

Query:  ---GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEG-TGEQQGEQYGDWLRAGVGLGESGRRVQKGGVD
           G    +RI+V + +  PLRR  +L+D++G E    + YERLPDFCYECG +GH+ + C +  E         Q+G WLRA +      R +++ GV+
Subjt:  ---GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEG-TGEQQGEQYGDWLRAGVGLGESGRRVQKGGVD

Query:  SV
         V
Subjt:  SV

A0A7J9FNM9 Uncharacterized protein (Fragment)6.0e-1229.65Show/hide
Query:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRI---CRGKLIRYPVPFQRGEAASYVY--
        T EEV+ V   EG   +  G +              D C    +F ++  E G  ++ YE  M   W   Y I      + +   +    GE  +  +  
Subjt:  TDEEVEMVRSGEGTSDLSIGSL--------------DLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRI---CRGKLIRYPVPFQRGEAASYVY--

Query:  ---GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTG-EQQGEQYGDWLRAGVGLGESGRRVQKGGV
           G    +R+++ + + RPLRR  RL D+ G E    + YERLPDF YECG +GH+ ++C +  E  G   Q  Q+G W+RA  G     R +++ GV
Subjt:  ---GTGLILRIRVLLRMDRPLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTG-EQQGEQYGDWLRAGVGLGESGRRVQKGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGATCTAGTCTGCCGGTGGAATTCTTGGAGGTTGACGGATGAGGAAGTAGAGATGGTGCGGTCGGGGGAGGGGACGTCGGATCTGTCGATAGGCTCGCTAGATTT
GTGTGCGATAGGGAAAGTTTTTTTCCTCATAGGGTGTGAATGTGGAAGCTTTTTGGAATGTTATGAGGGCAGCATGGAGAGCACATGGGGCAACACGTATAGAATCTGCA
GGGGAAAACTTATTCGCTATCCAGTTCCGTTCCAAAGGGGAGAAGCTGCGAGTTATGTCTACGGGACGGGGCTGATTCTTCGGATAAGGGTTCTTTTAAGGATGGATCGT
CCACTCAGGAGGGGGTTTCGTTTGCAGGATGAAGAGGGCAAGGAGTTCCGGTGCCCGGTTCTATACGAACGACTACCAGATTTCTGTTATGAGTGTGGTTGTTTGGGGCA
TTCGAGAAGGGAGTGCGGGGTTGTTGGTGAAGGCACAGGGGAGCAGCAGGGTGAGCAGTATGGTGATTGGTTGAGAGCAGGGGTGGGTTTGGGTGAGTCTGGGCGACGGG
TTCAGAAGGGAGGGGTGGACAGTGTAGCGGGTCGGAAACTTGAGACTACAAAGCTTTCTCCTGAGGGTCAGGTGCTCCATGCTACTAAGCCTGAGAAGGTCGGGAAGGAG
AGTGTTGGTGTCTCAGGGGAGGTTGTGGAAGTTCAGATTATTGAGCAAAGAGAGCATGGAGGGAGGGGTAGTAAGGAGGGGGATAGCATAGGTGTAGTGATAAGTGGGGA
GGGGTTGGCTGACAAGGCGAAAGGGAAGCAGAAGGTGGAGAGTGTCACGGCTGAGAGTGGGGTCACTGAGGGAGGGGATGATGGGATGCTGGTGGACTCTGTGGGGCAAG
GCAAGGGGGTGGAGATGGGGGGAAGGGGAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGATCTAGTCTGCCGGTGGAATTCTTGGAGGTTGACGGATGAGGAAGTAGAGATGGTGCGGTCGGGGGAGGGGACGTCGGATCTGTCGATAGGCTCGCTAGATTT
GTGTGCGATAGGGAAAGTTTTTTTCCTCATAGGGTGTGAATGTGGAAGCTTTTTGGAATGTTATGAGGGCAGCATGGAGAGCACATGGGGCAACACGTATAGAATCTGCA
GGGGAAAACTTATTCGCTATCCAGTTCCGTTCCAAAGGGGAGAAGCTGCGAGTTATGTCTACGGGACGGGGCTGATTCTTCGGATAAGGGTTCTTTTAAGGATGGATCGT
CCACTCAGGAGGGGGTTTCGTTTGCAGGATGAAGAGGGCAAGGAGTTCCGGTGCCCGGTTCTATACGAACGACTACCAGATTTCTGTTATGAGTGTGGTTGTTTGGGGCA
TTCGAGAAGGGAGTGCGGGGTTGTTGGTGAAGGCACAGGGGAGCAGCAGGGTGAGCAGTATGGTGATTGGTTGAGAGCAGGGGTGGGTTTGGGTGAGTCTGGGCGACGGG
TTCAGAAGGGAGGGGTGGACAGTGTAGCGGGTCGGAAACTTGAGACTACAAAGCTTTCTCCTGAGGGTCAGGTGCTCCATGCTACTAAGCCTGAGAAGGTCGGGAAGGAG
AGTGTTGGTGTCTCAGGGGAGGTTGTGGAAGTTCAGATTATTGAGCAAAGAGAGCATGGAGGGAGGGGTAGTAAGGAGGGGGATAGCATAGGTGTAGTGATAAGTGGGGA
GGGGTTGGCTGACAAGGCGAAAGGGAAGCAGAAGGTGGAGAGTGTCACGGCTGAGAGTGGGGTCACTGAGGGAGGGGATGATGGGATGCTGGTGGACTCTGTGGGGCAAG
GCAAGGGGGTGGAGATGGGGGGAAGGGGAGTGTAA
Protein sequenceShow/hide protein sequence
MEDLVCRWNSWRLTDEEVEMVRSGEGTSDLSIGSLDLCAIGKVFFLIGCECGSFLECYEGSMESTWGNTYRICRGKLIRYPVPFQRGEAASYVYGTGLILRIRVLLRMDR
PLRRGFRLQDEEGKEFRCPVLYERLPDFCYECGCLGHSRRECGVVGEGTGEQQGEQYGDWLRAGVGLGESGRRVQKGGVDSVAGRKLETTKLSPEGQVLHATKPEKVGKE
SVGVSGEVVEVQIIEQREHGGRGSKEGDSIGVVISGEGLADKAKGKQKVESVTAESGVTEGGDDGMLVDSVGQGKGVEMGGRGV