CuGenDBv2

Gene ID	Lag0007511
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr9:360354..365571
RNA-Seq Expression	Lag0007511
Synteny	Lag0007511
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_019149681.1 PREDICTED: uncharacterized protein LOC109146487 [Ipomoea nil]

4.5e-28

51.64

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  V +V++ VL+NGS   + TPTRGLRQGDPLS YLF+ICAEGLS LL +++A+ E+ G  + +  P +THLF+ADDSL FFKA+ ++  V++  L  Y
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKASGQTINFDTSNFMVRPNTR
         K SGQ +N+  SN     NTR
Subjt:  AKASGQTINFDTSNFMVRPNTR

XP_019178981.1 PREDICTED: uncharacterized protein LOC109174171 [Ipomoea nil]

3.4e-28

52.89

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  V +V +RVL+NG P  E  PTRGLRQGDPLS YLF+ICAEGLS LL  ++AK  + G  + +  P ++HLF+ADDSLLFFKA+ ++  V++  L+TY
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKASGQTINFDTSNFMVRPNT
         + SGQ++NF  SN     NT
Subjt:  AKASGQTINFDTSNFMVRPNT

XP_019186519.1 PREDICTED: uncharacterized protein LOC109181223 [Ipomoea nil]

2.0e-28

46.71

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  V +V++ VL+NGS   +  PTRGLRQGDPLS YLF+ICAEGLS LL +++AK E+ G  +T+  P +T+LF+ADDSLLFFKA+ ++  V++  L  Y
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKASGQTINFDTSNFMVRPNTRVGSGGDLWRQGRKSTGEVGKECAKIRLWVGQAGINCSPILGLQSY
         K SGQ +N+  SN     NTR               GE+  E A I L V QA  N    LGL S+
Subjt:  AKASGQTINFDTSNFMVRPNTRVGSGGDLWRQGRKSTGEVGKECAKIRLWVGQAGINCSPILGLQSY

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]

4.6e-33

61.79

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  VESV F VL+NG P  EFTP RGLRQGDPLS YLF++CAEGLS L+N  E K  +T L I + CP ++HLFYADD LLFFKAS  +CR I+ IL++Y
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKA-SGQTINFDTSNFMVRPNTR
         KA SGQ IN D S F+V  NT+
Subjt:  AKA-SGQTINFDTSNFMVRPNTR

XP_023901742.1 uncharacterized protein LOC112013579 [Quercus suber]

2.0e-28

51.24

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  V SV++ VL+NG      TP+RG+RQGDPLS  LFL+CAEGLS L++++   +++ G+SI + CP++THLF+ADDSLLF KA +++C  +  IL+ Y
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKASGQTINFDTSNFMVRPNT
         +ASGQ IN D S+    PNT
Subjt:  AKASGQTINFDTSNFMVRPNT

TrEMBL top hits

e value

%identity

Alignment

A0A2N9EX83 Reverse transcriptase domain-containing protein

2.2e-28

53.28

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  V +V++ VL+NG P+  F PTRGLRQGDP+S YLFL+CAEGL+ LL K+   K++ G+SI++  P L+HLF+ADDS+LF +AS ++C  IQ IL TY
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKASGQTINFDTSNFMVRPNTR
         +ASGQ IN D +      +TR
Subjt:  AKASGQTINFDTSNFMVRPNTR

A0A2N9F8H0 Reverse transcriptase domain-containing protein

2.2e-28

46.85

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  +++V++ V+LNG P     PTRG+RQGDPLS YLFLICAEGL+ LL  + A  +LTGLS+ +  P ++HLF+ADDSLLF KA+ ++CRV+   L+ Y
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKASGQTINFDTSNFMVRPNTRVGSGGDLWRQGR-KSTGEVGK
         +ASGQ +N++ ++     NT   +   +    R  STG++GK
Subjt:  AKASGQTINFDTSNFMVRPNTRVGSGGDLWRQGR-KSTGEVGK

A0A2N9I8Z6 Reverse transcriptase domain-containing protein

2.8e-28

50.39

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  V +V++ VL+NG PR  F PTRGLRQGDP+S Y FL+CAEGL+ LL K+   K + G+SI++  P LTHLF+ADDS+LF +AS ++C  IQ +L  Y
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKASGQTINFDTSNFMVRPNTRVGSGGDL
         +ASGQ IN D +      +TRV +  ++
Subjt:  AKASGQTINFDTSNFMVRPNTRVGSGGDL

A0A6J1DUG8 uncharacterized protein LOC111024135

2.2e-33

61.79

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  VESV F VL+NG P  EFTP RGLRQGDPLS YLF++CAEGLS L+N  E K  +T L I + CP ++HLFYADD LLFFKAS  +CR I+ IL++Y
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKA-SGQTINFDTSNFMVRPNTR
         KA SGQ IN D S F+V  NT+
Subjt:  AKA-SGQTINFDTSNFMVRPNTR

A0A7N2LPF9 Uncharacterized protein

9.8e-29

47.26

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Query:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY
        M  + SV + V +NG P    TPTRGLRQGDPLS YLFL+CAE LS L+ K+ A   L G+S+++  P L+HLF+ADDSL+F KA+ ++C V+Q +L+TY
Subjt:  MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTY

Query:  AKASGQTINFDTSNFMVRPNT--------RVGSGGDLWRQGRKSTG
         KASGQ +N   ++    PNT        R+  G  + RQ  K  G
Subjt:  AKASGQTINFDTSNFMVRPNT--------RVGSGGDLWRQGRKSTG

SwissProt top hits

e value

%identity

Alignment

P14381 Transposon TX1 uncharacterized 149 kDa protein

1.6e-04

33.33

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Query:  VLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASD-KDCRVIQYILDTYAKASGQTIN
        V +N S  +     RG+RQG PLS  L+ +  E   CLL     +K LTGL + +    +    YADD +L   A D  D    Q   + YA AS   IN
Subjt:  VLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASD-KDCRVIQYILDTYAKASGQTIN

Query:  FDTSNFMVRPNTRV
        +  S+ ++  + +V
Subjt:  FDTSNFMVRPNTRV

P92555 Uncharacterized mitochondrial protein AtMg01250

5.5e-13

45.59

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Query:  LLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDS
        ++NG+P+   TP+RGLRQGDPLS YLF++C E LS L  +++ +  L G+ ++ + P + HL +ADD+
Subjt:  LLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDS

Arabidopsis top hits

e value

%identity

Alignment

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)

3.9e-14

45.59

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Query:  LLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDS
        ++NG+P+   TP+RGLRQGDPLS YLF++C E LS L  +++ +  L G+ ++ + P + HL +ADD+
Subjt:  LLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDS

Sequences

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CDS sequence

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ATGGCTTGGGTGGAATCGGTTAACTTTCGTGTTCTTTTAAATGGATCTCCGAGATCTGAATTCACTCCAACTCGCGGTCTTCGTCAAGGAGATCCCCTATCTTCTTATTT
GTTCCTGATTTGCGCTGAAGGTTTATCCTGCCTTCTAAACAAATCAGAGGCTAAAAAGGAGTTGACAGGTTTGAGTATCACAAAGCATTGCCCTATTCTAACTCATTTGT
TTTATGCTGATGACAGTCTTCTTTTTTTCAAAGCCTCTGATAAAGATTGTAGGGTCATTCAATACATCTTAGATACATATGCGAAGGCGTCGGGCCAGACGATTAATTTT
GATACGTCAAACTTCATGGTTAGGCCAAACACTAGAGTTGGTTCTGGTGGGGATCTATGGAGGCAGGGAAGAAAATCCACTGGAGAAGTTGGAAAAGAATGTGCAAAAAT
AAGGCTATGGGTGGGTCAAGCCGGAATCAACTGCTCACCTATTCTGGGATTGCAAAGCTATCAAAGGAAGGATTGGACAGTACCCGACTATTGTGAATGCATTTGGAAGC
GAGATGGAGGAGACACAATAGATGCACAGAAGCTTGGGAAAGAAGATGAAACACACCTGTGCAAAGGCCGGCGGGGGAACTCTGAAACGCCTATGAAGGAGAACCTAATG
GACCTACAGATCATGGACTCCAACGATTCGAGTCCCACTGATCTTCTAATGAACAATTGGTTTATGGTCCAACCAACAAACCGAGTCCCTCTTGGGCCAATGAGAGGGTG
GGATCCCTTTGTTCAAGCCCCGGATACAACATTTAAGGGAACAACCTCTCTATTATCCCTAATTCGAGTAGGAGCGAATTCCTTCTTGCAGAACTATGTCCCCAGCTATC
TACCCGTTCCAAATGGGAGGCTTATTGAGTCGGGGATGTTCAACCACTCTCACCCATGCAGATCTAAGGATAAGTCCGAATAA

mRNA sequence

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Protein sequence

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MAWVESVNFRVLLNGSPRSEFTPTRGLRQGDPLSSYLFLICAEGLSCLLNKSEAKKELTGLSITKHCPILTHLFYADDSLLFFKASDKDCRVIQYILDTYAKASGQTINF
DTSNFMVRPNTRVGSGGDLWRQGRKSTGEVGKECAKIRLWVGQAGINCSPILGLQSYQRKDWTVPDYCECIWKRDGGDTIDAQKLGKEDETHLCKGRRGNSETPMKENLM
DLQIMDSNDSSPTDLLMNNWFMVQPTNRVPLGPMRGWDPFVQAPDTTFKGTTSLLSLIRVGANSFLQNYVPSYLPVPNGRLIESGMFNHSHPCRSKDKSE

Lag0007511 (gene) of Sponge gourd (AG-4) v1 genome