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Lag0007516 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007516
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr9:439637..440839
RNA-Seq ExpressionLag0007516
SyntenyLag0007516
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN72476.1 hypothetical protein VITISV_022512 [Vitis vinifera]5.1e-0529.08Show/hide
Query:  IDRKSF--CFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPE
        +++KSF   F  S  G  + + ER    V  V         + + L+ AV+  N RGF R+ R +N +   ++  N RGRF  ++    RRK + + +PE
Subjt:  IDRKSF--CFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPE

Query:  RFKGKGWGSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEV
          KG GW  L   I +V   S+++G+      GN+   + +
Subjt:  RFKGKGWGSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEV

KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]8.4e-0832.37Show/hide
Query:  SGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGWGSLAW
        S CG+K+ IEER G+R  K+ELE+G S  VRDCL AA +  NP  FWRR  L+  VL                            +P+   G G   LA 
Subjt:  SGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGWGSLAW

Query:  EISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFS
        E S          +   G  G+    +E+  +   +  K ES  +  D    K  EFD   +C  TVII+  S
Subjt:  EISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFS

KAE8648463.1 hypothetical protein Csa_023678, partial [Cucumis sativus]1.2e-0630.59Show/hide
Query:  ESTIGWMFKSFCANL-----AVGICESESVAKKLVFVVKTRGESGYSFHEWNCKVLAEGRRQAFSGGRVTTLDVPPFLRTKSLISIVANLCGGIKEDGEL
        E+  G + KS C +L       G+  +  +A K  F V T          W+ +V+   R+Q F GG V  LDVPPF   K     + + CGG      +
Subjt:  ESTIGWMFKSFCANL-----AVGICESESVAKKLVFVVKTRGESGYSFHEWNCKVLAEGRRQAFSGGRVTTLDVPPFLRTKSLISIVANLCGGIKEDGEL

Query:  EGDDVSMKEVSFKAKGNLHGLISVVSYLCHEGFFFSVRLVVGCQLEKE--------EIEADGDKSGKVER
              +KEVSF+A+    G I V   + H  FFF    V+G + E E         +E DG    K  R
Subjt:  EGDDVSMKEVSFKAKGNLHGLISVVSYLCHEGFFFSVRLVVGCQLEKE--------EIEADGDKSGKVER

RVW69993.1 hypothetical protein CK203_052727 [Vitis vinifera]5.1e-0529.08Show/hide
Query:  IDRKSF--CFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPE
        +++KSF   F +S  G  + + ER    V  V         + + L+ AV+  N RGF R+ R +N +   ++  N RGRF  ++    RRK + + +PE
Subjt:  IDRKSF--CFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPE

Query:  RFKGKGWGSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEV
          KG GW  L   I +V   S+++G+      GN+     +
Subjt:  RFKGKGWGSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEV

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]7.1e-3933.91Show/hide
Query:  MGRVFIDRKSFCFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIY
        MG++ IDRK F        +K+ IEER G+   K+EL+ G S  VRDCL  A    N   FW+R RL+ A++FFQVLENE+GRF +LS+++F+ ++  I+
Subjt:  MGRVFIDRKSFCFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIY

Query:  VPERFKGKGWGSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFSIKESWFSIKDSI
        +PE  +G GW SLA EIS +L  S  I + T      +  RE  K L          G  V        ++ +FAFE  +TVII++      W ++K  +
Subjt:  VPERFKGKGWGSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFSIKESWFSIKDSI

Query:  QRESTIGWMFKSFCANLAVGICESESVAKKLVFVVKTRGESGYSFHEWNCKVLAEGRRQAFSGGRVTTLDVPPFLRTKSLISIVANLCGGIKEDGELEGD
        ++   I   FK+FCANLAVGI  S+S AK                              +   G    L V P              CGG  E+ +    
Subjt:  QRESTIGWMFKSFCANLAVGICESESVAKKLVFVVKTRGESGYSFHEWNCKVLAEGRRQAFSGGRVTTLDVPPFLRTKSLISIVANLCGGIKEDGELEGD

Query:  DVSMKEVSFKAKGNLHGLISVVSYLCHEGFFFSVRLVVGCQLEKE
           M+EV FKA GN  G +     + ++ F FS R  +G   E E
Subjt:  DVSMKEVSFKAKGNLHGLISVVSYLCHEGFFFSVRLVVGCQLEKE

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein1.7e-1450.56Show/hide
Query:  VELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGWGSLAWEISNVLYG
        +EL+ G S  VRDCL  A    NPR FW R  L  A++FFQVLEN RGRF +LS+++F+ K+  I++ +  KGKG  S A EIS +L G
Subjt:  VELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGWGSLAWEISNVLYG

A0A0A0KGZ5 Uncharacterized protein1.4e-0847.37Show/hide
Query:  RKSFCFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQV-LENERG
        ++S+    + CG+K+ IEE  G+R  K+ELE+GAS  V DCL AA +  NP GFW R  L+   +FFQ  LE  RG
Subjt:  RKSFCFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQV-LENERG

A0A0A0LY03 Uncharacterized protein1.4e-1334.01Show/hide
Query:  GCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGWGSLAWE
        G  +K+ IEER G++  K++L++G    V D L AA       G W+R +LD  ++FFQVLEN   RF ++S+D+F+ ++  +++ E  +  GW SLA E
Subjt:  GCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGWGSLAWE

Query:  ISNVLYGSNKIGKSTTGP-IGNSDRREEVKTLPNPNDQKGESGTTVV
        I N+  G  +I     GP I       E++  P  + +K + G+ ++
Subjt:  ISNVLYGSNKIGKSTTGP-IGNSDRREEVKTLPNPNDQKGESGTTVV

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X24.1e-0832.37Show/hide
Query:  SGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGWGSLAW
        S CG+K+ IEER G+R  K+ELE+G S  VRDCL AA +  NP  FWRR  L+  VL                            +P+   G G   LA 
Subjt:  SGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGWGSLAW

Query:  EISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFS
        E S          +   G  G+    +E+  +   +  K ES  +  D    K  EFD   +C  TVII+  S
Subjt:  EISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFS

A0A5D3CQQ0 Uncharacterized protein3.4e-3933.91Show/hide
Query:  MGRVFIDRKSFCFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIY
        MG++ IDRK F        +K+ IEER G+   K+EL+ G S  VRDCL  A    N   FW+R RL+ A++FFQVLENE+GRF +LS+++F+ ++  I+
Subjt:  MGRVFIDRKSFCFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIY

Query:  VPERFKGKGWGSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFSIKESWFSIKDSI
        +PE  +G GW SLA EIS +L  S  I + T      +  RE  K L          G  V        ++ +FAFE  +TVII++      W ++K  +
Subjt:  VPERFKGKGWGSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFSIKESWFSIKDSI

Query:  QRESTIGWMFKSFCANLAVGICESESVAKKLVFVVKTRGESGYSFHEWNCKVLAEGRRQAFSGGRVTTLDVPPFLRTKSLISIVANLCGGIKEDGELEGD
        ++   I   FK+FCANLAVGI  S+S AK                              +   G    L V P              CGG  E+ +    
Subjt:  QRESTIGWMFKSFCANLAVGICESESVAKKLVFVVKTRGESGYSFHEWNCKVLAEGRRQAFSGGRVTTLDVPPFLRTKSLISIVANLCGGIKEDGELEGD

Query:  DVSMKEVSFKAKGNLHGLISVVSYLCHEGFFFSVRLVVGCQLEKE
           M+EV FKA GN  G +     + ++ F FS R  +G   E E
Subjt:  DVSMKEVSFKAKGNLHGLISVVSYLCHEGFFFSVRLVVGCQLEKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGGGTGTTCATTGACAGGAAATCATTCTGTTTCTGGAAGAGTGGGTGTGGTAAGAAGTTGGTGATAGAAGAGAGAAGAGGGAAGAGAGTTCACAAAGTGGAGCT
TGAGATCGGGGCATCTATATCGGTTCGTGATTGTTTAGAGGCAGCGGTGAAAACAGGGAACCCTCGTGGATTTTGGAGGCGGGGGAGGTTGGATAATGCGGTGTTATTTT
TTCAGGTATTAGAAAACGAGAGAGGGAGGTTTGGGCTTCTTTCTATGGATAACTTTAGGCGGAAAAGAATGGCGATTTATGTTCCAGAGAGGTTCAAAGGCAAGGGATGG
GGATCGTTAGCATGGGAAATTTCAAATGTGTTATACGGATCCAATAAAATAGGGAAGTCGACAACGGGGCCCATTGGAAACTCTGATCGAAGGGAAGAAGTTAAGACCCT
CCCGAATCCAAATGATCAGAAAGGGGAGTCGGGAACTACTGTTGTGGATGAAGTGTTCAACAAGTCTGAAGAGTTTGATTTTGCCTTCGAGTGTTCGACGACGGTCATTA
TTGAAAGGTTTAGTATCAAGGAATCGTGGTTCTCTATAAAGGATTCTATTCAGAGAGAAAGTACTATAGGGTGGATGTTCAAGTCGTTTTGTGCAAACCTTGCTGTCGGA
ATCTGCGAGAGTGAATCAGTAGCCAAGAAATTGGTTTTCGTGGTTAAGACCAGAGGAGAGTCAGGGTATTCATTTCACGAATGGAACTGTAAGGTTCTGGCTGAGGGTCG
CCGACAAGCGTTTTCTGGTGGAAGGGTTACGACCCTGGATGTTCCACCATTCCTTCGGACAAAAAGTTTGATCTCAATAGTGGCGAATCTCTGTGGAGGAATTAAAGAAG
ACGGAGAATTGGAAGGGGACGACGTTTCGATGAAGGAAGTCAGTTTCAAGGCCAAGGGAAATCTGCATGGTCTTATTTCGGTGGTTAGCTACCTCTGTCATGAGGGGTTC
TTCTTTTCGGTCAGATTGGTAGTCGGTTGTCAGCTGGAAAAGGAGGAGATCGAGGCGGATGGAGACAAGTCTGGGAAAGTTGAGAGAATTGTCCTTCTGTCGAAGGATGT
AGTCGTAGGGGGTCAGATCGTTCAGAAGGGTAGGGATCACGTGGGGTCGGCGGGGAATGAGGCTAATGATAAGATAATTGAGAAGATTGGCCTGTGGGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGGGTGTTCATTGACAGGAAATCATTCTGTTTCTGGAAGAGTGGGTGTGGTAAGAAGTTGGTGATAGAAGAGAGAAGAGGGAAGAGAGTTCACAAAGTGGAGCT
TGAGATCGGGGCATCTATATCGGTTCGTGATTGTTTAGAGGCAGCGGTGAAAACAGGGAACCCTCGTGGATTTTGGAGGCGGGGGAGGTTGGATAATGCGGTGTTATTTT
TTCAGGTATTAGAAAACGAGAGAGGGAGGTTTGGGCTTCTTTCTATGGATAACTTTAGGCGGAAAAGAATGGCGATTTATGTTCCAGAGAGGTTCAAAGGCAAGGGATGG
GGATCGTTAGCATGGGAAATTTCAAATGTGTTATACGGATCCAATAAAATAGGGAAGTCGACAACGGGGCCCATTGGAAACTCTGATCGAAGGGAAGAAGTTAAGACCCT
CCCGAATCCAAATGATCAGAAAGGGGAGTCGGGAACTACTGTTGTGGATGAAGTGTTCAACAAGTCTGAAGAGTTTGATTTTGCCTTCGAGTGTTCGACGACGGTCATTA
TTGAAAGGTTTAGTATCAAGGAATCGTGGTTCTCTATAAAGGATTCTATTCAGAGAGAAAGTACTATAGGGTGGATGTTCAAGTCGTTTTGTGCAAACCTTGCTGTCGGA
ATCTGCGAGAGTGAATCAGTAGCCAAGAAATTGGTTTTCGTGGTTAAGACCAGAGGAGAGTCAGGGTATTCATTTCACGAATGGAACTGTAAGGTTCTGGCTGAGGGTCG
CCGACAAGCGTTTTCTGGTGGAAGGGTTACGACCCTGGATGTTCCACCATTCCTTCGGACAAAAAGTTTGATCTCAATAGTGGCGAATCTCTGTGGAGGAATTAAAGAAG
ACGGAGAATTGGAAGGGGACGACGTTTCGATGAAGGAAGTCAGTTTCAAGGCCAAGGGAAATCTGCATGGTCTTATTTCGGTGGTTAGCTACCTCTGTCATGAGGGGTTC
TTCTTTTCGGTCAGATTGGTAGTCGGTTGTCAGCTGGAAAAGGAGGAGATCGAGGCGGATGGAGACAAGTCTGGGAAAGTTGAGAGAATTGTCCTTCTGTCGAAGGATGT
AGTCGTAGGGGGTCAGATCGTTCAGAAGGGTAGGGATCACGTGGGGTCGGCGGGGAATGAGGCTAATGATAAGATAATTGAGAAGATTGGCCTGTGGGCCTGA
Protein sequenceShow/hide protein sequence
MGRVFIDRKSFCFWKSGCGKKLVIEERRGKRVHKVELEIGASISVRDCLEAAVKTGNPRGFWRRGRLDNAVLFFQVLENERGRFGLLSMDNFRRKRMAIYVPERFKGKGW
GSLAWEISNVLYGSNKIGKSTTGPIGNSDRREEVKTLPNPNDQKGESGTTVVDEVFNKSEEFDFAFECSTTVIIERFSIKESWFSIKDSIQRESTIGWMFKSFCANLAVG
ICESESVAKKLVFVVKTRGESGYSFHEWNCKVLAEGRRQAFSGGRVTTLDVPPFLRTKSLISIVANLCGGIKEDGELEGDDVSMKEVSFKAKGNLHGLISVVSYLCHEGF
FFSVRLVVGCQLEKEEIEADGDKSGKVERIVLLSKDVVVGGQIVQKGRDHVGSAGNEANDKIIEKIGLWA