| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0036866.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 2.7e-44 | 38.48 | Show/hide |
Query: HSQANQNKLSSSEEARYPQDSKKYDPQSSLIRQSVDSSAVISQNLPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW-
H + L+S + R S +P ++R D LP REV F+IELEP T PI +A YRMA A+L+ELKVQ+QELL K I L VSPW
Subjt: HSQANQNKLSSSEEARYPQDSKKYDPQSSLIRQSVDSSAVISQNLPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW-
Query: --------------------------IKDEDIPKTAFRSRYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRV
IKD D+PKTAFRSRY HYEF VM FGL APAVFMDLM E+ H+R V
Subjt: --------------------------IKDEDIPKTAFRSRYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRV
Query: LST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVEIVSEWPCLITVNEARS----SSVVYSDASKKSLGYVLTQDEKVVVYVFHQ------
L T ++ Y S EFW +QVS LGH VV + G+ VD +E V+ W TV+E RS + DASKK LGYVL Q KVV YV HQ
Subjt: LST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVEIVSEWPCLITVNEARS----SSVVYSDASKKSLGYVLTQDEKVVVYVFHQ------
Query: ---------------------------------SQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAP
+ K F KELN+R RR L LVKDY EILYH ++ V +D L KV A + AP
Subjt: ---------------------------------SQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAP
|
|
| KAA0046956.1 pol protein [Cucumis melo var. makuwa] | 1.2e-41 | 37.78 | Show/hide |
Query: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW--------------------------------IKDEDIPKTAFRS
LP RE+ F+IELE T PI +A +MA +L+ELKVQ+QELL K I VSPW I+D +IPKTAFRS
Subjt: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW--------------------------------IKDEDIPKTAFRS
Query: RYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVD
RY HYEF VM FGL AP VFMDLM E+ H+ +VL T + Y S EFW ++VS LGH VV G+ VD
Subjt: RYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVD
Query: STMVEIVSEWPCLITVNEARS-------------------------------------SSVVYSDASKKSLGYVLTQDEKVVVYVFHQSQEPKVFLHPKE
+E+V+ WP TV++ RS S V+YSDASKK +GYVL Q K+ ++ H+S K F KE
Subjt: STMVEIVSEWPCLITVNEARS-------------------------------------SSVVYSDASKKSLGYVLTQDEKVVVYVFHQSQEPKVFLHPKE
Query: LNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAPRL
LN+R RR L LVKDY EILYH + V +D L K+ A + AP L
Subjt: LNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAPRL
|
|
| KAA0054231.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.2e-41 | 37.9 | Show/hide |
Query: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW---------------------------IKDEDIPKTAFRSRYDHY
LP REV F+IELEP T PI +A YRMA A+L+ELKVQ+QELL K I VSPW IKD D+PKT FRSRY HY
Subjt: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW---------------------------IKDEDIPKTAFRSRYDHY
Query: EFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVE
EF VM FGL APAVFMDLM E+ H+R VL T + Y S EFW +QVS LGH VV + G+ VD +E
Subjt: EFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVE
Query: IVSEWPCLITVNEARS-------------------------SSVVYSDASKKSLGYVLTQDEKVVVY---------------------------------
V+ W TV+E+++ S V+YSDASKK LG VL Q KVV Y
Subjt: IVSEWPCLITVNEARS-------------------------SSVVYSDASKKSLGYVLTQDEKVVVY---------------------------------
Query: ------VFHQSQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAP
+F + K F KELN+R RR L LVKDY EILYH ++ V +D L KV A + AP
Subjt: ------VFHQSQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAP
|
|
| TYK04826.1 pol protein [Cucumis melo var. makuwa] | 1.2e-41 | 37.78 | Show/hide |
Query: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW--------------------------------IKDEDIPKTAFRS
LP RE+ F+IELE T PI +A +MA +L+ELKVQ+QELL K I VSPW I+D +IPKTAFRS
Subjt: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW--------------------------------IKDEDIPKTAFRS
Query: RYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVD
RY HYEF VM FGL AP VFMDLM E+ H+ +VL T + Y S EFW ++VS LGH VV G+ VD
Subjt: RYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVD
Query: STMVEIVSEWPCLITVNEARS-------------------------------------SSVVYSDASKKSLGYVLTQDEKVVVYVFHQSQEPKVFLHPKE
+E+V+ WP TV++ RS S V+YSDASKK +GYVL Q K+ ++ H+S K F KE
Subjt: STMVEIVSEWPCLITVNEARS-------------------------------------SSVVYSDASKKSLGYVLTQDEKVVVYVFHQSQEPKVFLHPKE
Query: LNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAPRL
LN+R RR L LVKDY EILYH + V +D L K+ A + AP L
Subjt: LNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAPRL
|
|
| TYK09653.1 pol protein [Cucumis melo var. makuwa] | 2.8e-41 | 35.78 | Show/hide |
Query: LSSSEEARYPQDSKKYDPQSSLIRQSVDSSAVISQNLPLV---REVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW------
L+S + R P+ S +P ++R+ D V S LP + RE+ F+IELEPDT PI +A YR A A+L+E+KVQ+QELL K I SPW
Subjt: LSSSEEARYPQDSKKYDPQSSLIRQSVDSSAVISQNLPLV---REVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW------
Query: ---------------------------------------------------------IKDEDIPKTAFRSRYDHYEFTVMFFGLAEAPAVFMDLM-----
I+D DIPKTAFRSRY HYEF VM FGL APAVFMDLM
Subjt: ---------------------------------------------------------IKDEDIPKTAFRSRYDHYEFTVMFFGLAEAPAVFMDLM-----
Query: ---------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVEIVSEWPCLITVNEARS---------
E+ H+R+VL T + Y S EFW ++VS LGH VV G+ VD +E V+ WP TVNE RS
Subjt: ---------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVEIVSEWPCLITVNEARS---------
Query: -------------SSVVYSDASKKSLGYVLTQD---------------EKVVVYVFHQSQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPR
S V+YSD SKK LG VL Q EK+ ++ H+S K F KELN+R RR L LVKDY EILYH ++ V
Subjt: -------------SSVVYSDASKKSLGYVLTQD---------------EKVVVYVFHQSQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPR
Query: SDELKHKVLTEACNLFIDAPRL
+D L KV A + AP L
Subjt: SDELKHKVLTEACNLFIDAPRL
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7T407 Reverse transcriptase | 1.3e-44 | 38.48 | Show/hide |
Query: HSQANQNKLSSSEEARYPQDSKKYDPQSSLIRQSVDSSAVISQNLPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW-
H + L+S + R S +P ++R D LP REV F+IELEP T PI +A YRMA A+L+ELKVQ+QELL K I L VSPW
Subjt: HSQANQNKLSSSEEARYPQDSKKYDPQSSLIRQSVDSSAVISQNLPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW-
Query: --------------------------IKDEDIPKTAFRSRYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRV
IKD D+PKTAFRSRY HYEF VM FGL APAVFMDLM E+ H+R V
Subjt: --------------------------IKDEDIPKTAFRSRYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRV
Query: LST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVEIVSEWPCLITVNEARS----SSVVYSDASKKSLGYVLTQDEKVVVYVFHQ------
L T ++ Y S EFW +QVS LGH VV + G+ VD +E V+ W TV+E RS + DASKK LGYVL Q KVV YV HQ
Subjt: LST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVEIVSEWPCLITVNEARS----SSVVYSDASKKSLGYVLTQDEKVVVYVFHQ------
Query: ---------------------------------SQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAP
+ K F KELN+R RR L LVKDY EILYH ++ V +D L KV A + AP
Subjt: ---------------------------------SQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAP
|
|
| A0A5A7TYA3 Pol protein | 6.0e-42 | 37.78 | Show/hide |
Query: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW--------------------------------IKDEDIPKTAFRS
LP RE+ F+IELE T PI +A +MA +L+ELKVQ+QELL K I VSPW I+D +IPKTAFRS
Subjt: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW--------------------------------IKDEDIPKTAFRS
Query: RYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVD
RY HYEF VM FGL AP VFMDLM E+ H+ +VL T + Y S EFW ++VS LGH VV G+ VD
Subjt: RYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVD
Query: STMVEIVSEWPCLITVNEARS-------------------------------------SSVVYSDASKKSLGYVLTQDEKVVVYVFHQSQEPKVFLHPKE
+E+V+ WP TV++ RS S V+YSDASKK +GYVL Q K+ ++ H+S K F KE
Subjt: STMVEIVSEWPCLITVNEARS-------------------------------------SSVVYSDASKKSLGYVLTQDEKVVVYVFHQSQEPKVFLHPKE
Query: LNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAPRL
LN+R RR L LVKDY EILYH + V +D L K+ A + AP L
Subjt: LNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAPRL
|
|
| A0A5A7UL17 Reverse transcriptase | 6.0e-42 | 37.9 | Show/hide |
Query: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW---------------------------IKDEDIPKTAFRSRYDHY
LP REV F+IELEP T PI +A YRMA A+L+ELKVQ+QELL K I VSPW IKD D+PKT FRSRY HY
Subjt: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW---------------------------IKDEDIPKTAFRSRYDHY
Query: EFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVE
EF VM FGL APAVFMDLM E+ H+R VL T + Y S EFW +QVS LGH VV + G+ VD +E
Subjt: EFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVE
Query: IVSEWPCLITVNEARS-------------------------SSVVYSDASKKSLGYVLTQDEKVVVY---------------------------------
V+ W TV+E+++ S V+YSDASKK LG VL Q KVV Y
Subjt: IVSEWPCLITVNEARS-------------------------SSVVYSDASKKSLGYVLTQDEKVVVY---------------------------------
Query: ------VFHQSQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAP
+F + K F KELN+R RR L LVKDY EILYH ++ V +D L KV A + AP
Subjt: ------VFHQSQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAP
|
|
| A0A5D3C310 Pol protein | 6.0e-42 | 37.78 | Show/hide |
Query: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW--------------------------------IKDEDIPKTAFRS
LP RE+ F+IELE T PI +A +MA +L+ELKVQ+QELL K I VSPW I+D +IPKTAFRS
Subjt: LPLVREVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW--------------------------------IKDEDIPKTAFRS
Query: RYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVD
RY HYEF VM FGL AP VFMDLM E+ H+ +VL T + Y S EFW ++VS LGH VV G+ VD
Subjt: RYDHYEFTVMFFGLAEAPAVFMDLM--------------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVD
Query: STMVEIVSEWPCLITVNEARS-------------------------------------SSVVYSDASKKSLGYVLTQDEKVVVYVFHQSQEPKVFLHPKE
+E+V+ WP TV++ RS S V+YSDASKK +GYVL Q K+ ++ H+S K F KE
Subjt: STMVEIVSEWPCLITVNEARS-------------------------------------SSVVYSDASKKSLGYVLTQDEKVVVYVFHQSQEPKVFLHPKE
Query: LNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAPRL
LN+R RR L LVKDY EILYH + V +D L K+ A + AP L
Subjt: LNVRHRR-LSLVKDYVVEILYHSRRSCVPRSDELKHKVLTEACNLFIDAPRL
|
|
| A0A5D3CCS5 Pol protein | 1.3e-41 | 35.78 | Show/hide |
Query: LSSSEEARYPQDSKKYDPQSSLIRQSVDSSAVISQNLPLV---REVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW------
L+S + R P+ S +P ++R+ D V S LP + RE+ F+IELEPDT PI +A YR A A+L+E+KVQ+QELL K I SPW
Subjt: LSSSEEARYPQDSKKYDPQSSLIRQSVDSSAVISQNLPLV---REVGFSIELEPDTTPIPKALYRMALAKLRELKVQIQELLGKSLICLKVSPW------
Query: ---------------------------------------------------------IKDEDIPKTAFRSRYDHYEFTVMFFGLAEAPAVFMDLM-----
I+D DIPKTAFRSRY HYEF VM FGL APAVFMDLM
Subjt: ---------------------------------------------------------IKDEDIPKTAFRSRYDHYEFTVMFFGLAEAPAVFMDLM-----
Query: ---------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVEIVSEWPCLITVNEARS---------
E+ H+R+VL T + Y S EFW ++VS LGH VV G+ VD +E V+ WP TVNE RS
Subjt: ---------------------TENTRHVRRVLST-QEETSYLPSSLSEFWFQQVSLLGHDVVPRNGIRVDSTMVEIVSEWPCLITVNEARS---------
Query: -------------SSVVYSDASKKSLGYVLTQD---------------EKVVVYVFHQSQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPR
S V+YSD SKK LG VL Q EK+ ++ H+S K F KELN+R RR L LVKDY EILYH ++ V
Subjt: -------------SSVVYSDASKKSLGYVLTQD---------------EKVVVYVFHQSQEPKVFLHPKELNVRHRR-LSLVKDYVVEILYHSRRSCVPR
Query: SDELKHKVLTEACNLFIDAPRL
+D L KV A + AP L
Subjt: SDELKHKVLTEACNLFIDAPRL
|
|
