CuGenDBv2

Gene ID	Lag0007530
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Pectin lyase-like superfamily protein
Genome location	chr9:724068..724934
RNA-Seq Expression	Lag0007530
Synteny	Lag0007530
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0004650 - polygalacturonase activity (molecular function)
InterPro domains	IPR011050 - Pectin lyase fold/virulence factor IPR012334 - Pectin lyase fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573613.1 putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

XP_022945523.1 probable polygalacturonase isoform X1 [Cucurbita moschata]

2.2e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

XP_022967081.1 probable polygalacturonase isoform X1 [Cucurbita maxima]

2.2e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

XP_023542118.1 probable polygalacturonase isoform X1 [Cucurbita pepo subsp. pepo]

2.2e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

XP_023542119.1 probable polygalacturonase isoform X2 [Cucurbita pepo subsp. pepo]

2.2e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DFX6 probable polygalacturonase isoform X1

2.9e-31

71.58

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Query:  QEDHNREDSPPLLVDVLLLLALFCIAPWVARNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        ++  NR      LVDVLLLLALFC+AP +AR++S+CKL N  EIRPH+VSI DFG VGDG+TLNTKAFQNAIFYLNSFA KGG KL VPA RWLT
Subjt:  QEDHNREDSPPLLVDVLLLLALFCIAPWVARNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

A0A6J1G153 probable polygalacturonase isoform X1

1.1e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

A0A6J1G174 probable polygalacturonase isoform X2

1.1e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

A0A6J1HPS3 probable polygalacturonase isoform X2

1.1e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

A0A6J1HR20 probable polygalacturonase isoform X1

1.1e-33

84.09

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Query:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        +P  LVDVLLLLALFCI+PWVA  ++SYCKLTNTGEIRPH+VSI DFG VGDGVTLNTKAFQNAIFYLNSFA KGG KLFVPA RWLT
Subjt:  SPPLLVDVLLLLALFCIAPWVA-RNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

SwissProt top hits

e value

%identity

Alignment

A7PZL3 Probable polygalacturonase

1.5e-11

56.86

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Query:  RPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        R H+ S++DFG VGDG TLNTKAFQ+A+  L+ +  +GG +L+VPA +WLT
Subjt:  RPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

Arabidopsis top hits

e value

%identity

Alignment

AT3G06770.2 Pectin lyase-like superfamily protein

2.4e-17

51.72

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Query:  VDVLLLLALFCIAPWVARNNSYCKLTN-----TGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        V  +L+LAL  + P  A  +   K+ +     +   RPH+VSI DFG VGDG TLNT AFQNA+FYL SFA KGG +L+VP   WLT
Subjt:  VDVLLLLALFCIAPWVARNNSYCKLTN-----TGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

AT3G16850.1 Pectin lyase-like superfamily protein

1.6e-18

62.5

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Query:  NNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        NN+ CK     + RPH+VSI++FG VGDG TLNT AFQNA+FYL SFA KGG +L+VP  +WLT
Subjt:  NNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

AT3G62110.1 Pectin lyase-like superfamily protein

2.1e-21

59.3

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Query:  LLVDVLLLLALFCIAPWVARNNS-YCKLTNTGEI-RPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        LL+ VLL+ A +    W +   S +C+ +N   + RPH+VSI +FG VGDGVTLNTKAFQNA+FYLNSF+ KGG KLFVPA +WLT
Subjt:  LLVDVLLLLALFCIAPWVARNNS-YCKLTNTGEI-RPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

AT5G49215.1 Pectin lyase-like superfamily protein

1.8e-17

51.14

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Query:  PLLVDVLLLLALFCIAPWVARN---NSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        P+ V ++LLL L  +     R+    + C        RPH+V I DFG VGDG TLNT AFQNA+FYL SFA KGG +L+VP  RWLT
Subjt:  PLLVDVLLLLALFCIAPWVARN---NSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

AT5G49215.2 Pectin lyase-like superfamily protein

6.9e-17

51.16

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Query:  PPLLVDVLLLLALFCIAPWVARNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT
        P  LV +L L ++  I        + C        RPH+V I DFG VGDG TLNT AFQNA+FYL SFA KGG +L+VP  RWLT
Subjt:  PPLLVDVLLLLALFCIAPWVARNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFVPAKRWLT

Sequences

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CDS sequence

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ATGAAGAGACCTCTCATCTTGTCTTTCTTTGCCCCCAAATTTCTTCGTGTTCTTTGCACCTTTGTACAAGAAGATCACAACAGGGAAGACTCACCCCCTCTGCTGGTGGA
CGTACTTCTGTTGCTTGCACTGTTTTGTATTGCTCCATGGGTTGCTAGGAACAACTCTTATTGCAAGCTGACTAATACAGGAGAAATACGACCCCACAATGTCTCTATCA
TTGATTTTGGGGAAGTTGGAGATGGCGTCACTCTCAACACAAAAGCATTCCAAAATGCTATTTTCTATCTCAACTCTTTTGCTCACAAGGGTGGTGGCAAGCTTTTTGTC
CCTGCTAAGCGTTGGTTGACATGA

mRNA sequence

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Protein sequence

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MKRPLILSFFAPKFLRVLCTFVQEDHNREDSPPLLVDVLLLLALFCIAPWVARNNSYCKLTNTGEIRPHNVSIIDFGEVGDGVTLNTKAFQNAIFYLNSFAHKGGGKLFV
PAKRWLT

Lag0007530 (gene) of Sponge gourd (AG-4) v1 genome