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Lag0007539 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007539
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr9:803088..805005
RNA-Seq ExpressionLag0007539
SyntenyLag0007539
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597333.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.9e-2083.87Show/hide
Query:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        +N D ISWNSIICGFAHHGNGKEALEM EKMR ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

KAG7028799.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-2083.87Show/hide
Query:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        +N D ISWNSIICGFAHHGNGKEALEM EKMR ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

XP_022937344.1 pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata]2.9e-2083.87Show/hide
Query:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        +N D ISWNSIICGFAHHGNGKEALEM EKMR ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

XP_022974531.1 pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita maxima]8.6e-2086.44Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        D ISWNSIICGFAHHGNGKEALEM EKMR ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

XP_038895091.1 pentatricopeptide repeat-containing protein At4g02750-like [Benincasa hispida]5.0e-2082.26Show/hide
Query:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        +N D ISWNSIICGFAHHGNG+EAL+MFEKMR ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

TrEMBL top hitse value%identityAlignment
A0A0A0L9N2 Uncharacterized protein9.2e-2083.05Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        D ISWNS+ICGFAHHGNG++ALEMFEKMR ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

A0A1S3AWI6 pentatricopeptide repeat-containing protein At4g02750-like2.1e-1986.79Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL
        D ISWNSIICGFAHHGNG++ALEMFEKM+ ANIEPNHITFIGVLSACSH+GL+
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL

A0A5D3D160 Pentatricopeptide repeat-containing protein1.2e-1983.05Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        D ISWNSIICGFAHHGNG++ALEMFEKM+ ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

A0A6J1FAX2 pentatricopeptide repeat-containing protein At4g02750-like1.4e-2083.87Show/hide
Query:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        +N D ISWNSIICGFAHHGNGKEALEM EKMR ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  TNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

A0A6J1IBL8 pentatricopeptide repeat-containing protein At4g02750-like4.2e-2086.44Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY
        D ISWNSIICGFAHHGNGKEALEM EKMR ANIEPNHITFIGVLSACSH+GL+   RYY
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL-LFRYY

SwissProt top hitse value%identityAlignment
Q9FK33 Pentatricopeptide repeat-containing protein At5g50390, chloroplastic1.4e-1256Show/hide
Query:  ISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGL
        ISWN+++ G+A+HG G +A+++FEKM +AN+ PNH+TF+ VLSAC++ GL
Subjt:  ISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGL

Q9FWA6 Pentatricopeptide repeat-containing protein At3g02330, mitochondrial5.1e-1556.6Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL
        D ++WN++ICG+AHHG G+EA+++FE+M   NI+PNH+TFI +L AC+H GL+
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL

Q9LFI1 Pentatricopeptide repeat-containing protein At3g53360, mitochondrial9.5e-1458.18Show/hide
Query:  NGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL
        N D +SW+++I G+A  G G+EAL +F++M+SA IEPNH+TF+GVL+ACSH GL+
Subjt:  NGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL

Q9SIL5 Pentatricopeptide repeat-containing protein At2g205401.8e-1247.14Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLLL--FRYYEKPRSPSAIE
        D ISW+++I G+A+HGN   A+E F +M+ A ++PN ITF+G+LSACSH G+     RY++  R    IE
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLLL--FRYYEKPRSPSAIE

Q9SVA5 Pentatricopeptide repeat-containing protein At4g395308.6e-1564.15Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL
        D + WNS+I  +A+HG GK+AL+M EKM S  IEPN+ITF+GVLSACSH GL+
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL

Arabidopsis top hitse value%identityAlignment
AT2G20540.1 mitochondrial editing factor 211.3e-1347.14Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLLL--FRYYEKPRSPSAIE
        D ISW+++I G+A+HGN   A+E F +M+ A ++PN ITF+G+LSACSH G+     RY++  R    IE
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLLL--FRYYEKPRSPSAIE

AT3G02330.1 Pentatricopeptide repeat (PPR) superfamily protein3.6e-1656.6Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL
        D ++WN++ICG+AHHG G+EA+++FE+M   NI+PNH+TFI +L AC+H GL+
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL

AT3G53360.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.8e-1558.18Show/hide
Query:  NGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL
        N D +SW+++I G+A  G G+EAL +F++M+SA IEPNH+TF+GVL+ACSH GL+
Subjt:  NGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL

AT4G39530.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.1e-1664.15Show/hide
Query:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL
        D + WNS+I  +A+HG GK+AL+M EKM S  IEPN+ITF+GVLSACSH GL+
Subjt:  DEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLL

AT5G50390.1 Pentatricopeptide repeat (PPR-like) superfamily protein9.8e-1456Show/hide
Query:  ISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGL
        ISWN+++ G+A+HG G +A+++FEKM +AN+ PNH+TF+ VLSAC++ GL
Subjt:  ISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCCCAGAGCGTCGAGACGCTAAGGCTAGCGTCTCAACAGTAAGCCTCAGTTCTCTTCCATGTCGAACTAACGGGGATGAAATTTCGTGGAATTCTATTATCTGTGG
GTTTGCTCACCATGGAAATGGCAAAGAAGCACTGGAAATGTTTGAAAAAATGAGATCAGCTAACATAGAACCTAATCATATAACCTTTATTGGTGTTCTGTCTGCCTGTA
GCCATGAAGGTCTGCTACTATTTCGATATTATGAAAAACCAAGGTCCCCTTCAGCCATTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCCCAGAGCGTCGAGACGCTAAGGCTAGCGTCTCAACAGTAAGCCTCAGTTCTCTTCCATGTCGAACTAACGGGGATGAAATTTCGTGGAATTCTATTATCTGTGG
GTTTGCTCACCATGGAAATGGCAAAGAAGCACTGGAAATGTTTGAAAAAATGAGATCAGCTAACATAGAACCTAATCATATAACCTTTATTGGTGTTCTGTCTGCCTGTA
GCCATGAAGGTCTGCTACTATTTCGATATTATGAAAAACCAAGGTCCCCTTCAGCCATTGAGTGA
Protein sequenceShow/hide protein sequence
MVPERRDAKASVSTVSLSSLPCRTNGDEISWNSIICGFAHHGNGKEALEMFEKMRSANIEPNHITFIGVLSACSHEGLLLFRYYEKPRSPSAIE