CuGenDBv2

Gene ID	Lag0007566
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	chloroplast stem-loop binding protein of 41 kDa a, chloroplastic
Genome location	chr9:1149009..1151017
RNA-Seq Expression	Lag0007566
Synteny	Lag0007566
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005829 - cytosol (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR001509 - NAD-dependent epimerase/dehydratase IPR036291 - NAD(P)-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571471.1 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-204

90.32

Show/hide

Query:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL
        MAALA SSSSLF+SKPSIHL  SLSPCL R SL   S PSAL+SSF+ISHSFL +PS+SR SNVCSFSVRASSA+KK VLIVNTNSGGHA+IGFYFA+QL
Subjt:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL

Query:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
        LGSGHEVTILTVGEE SDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP

Query:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD
        HVEGDTVKA+AGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+H RDLSSMLTLAVEK DEAH+NIFNCVSD
Subjt:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA
        RAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFRNMHFYAEPRAA++ILGWK +TNLPEDLKERFEEYVKIGRDKKAIKFELDD ILESLKV 
Subjt:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA

Query:  VAA
        VAA
Subjt:  VAA

XP_022963688.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita moschata]

1.4e-204

90.57

Show/hide

Query:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL
        MAALA SSSSLF+SKPSIHL  SLSPCL R SL   S  SAL+SSF+ISHSFL +PS+SR SNVCSFSVRASSA+KK VLIVNTNSGGHA+IGFYFAKQL
Subjt:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL

Query:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
        LGSGHEVTILTVGEE SDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP

Query:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD
        HVEGDTVKA+AGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+H RDLSSMLTLAVEK DEAH+NIFNCVSD
Subjt:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA
        RAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFRNMHFYAEPRAA++ILGWK +TNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKV 
Subjt:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA

Query:  VAA
        VAA
Subjt:  VAA

XP_022967430.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita maxima]

4.8e-205

90.57

Show/hide

Query:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLS---LSHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL
        MAALA SSSSLF+SKPSIHL  SLSPCL R S   +S PSAL+SSF+ISHSFL +PS+SR SNVCSFSVRASSA+KK VLIVNTNSGGHA+IGFYFAKQL
Subjt:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLS---LSHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL

Query:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
        LGSGHEVTILTVGEE SDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP

Query:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD
        HVEGDTVKA+AGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAH RDLSSMLTLAVEK DEAH+NIFNCVSD
Subjt:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA
        RAVTLDGMAKLCAQAAGR VNIVHYDPK VG+DAKKAFPFRNMHFYAEPRAA++ILGWK +TNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKV 
Subjt:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA

Query:  VAA
        VAA
Subjt:  VAA

XP_023554314.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Cucurbita pepo subsp. pepo]

7.0e-204

90.57

Show/hide

Query:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL
        MAALA SSSSLF+SKPSIHL  SLSPCL R SL   S PSAL+SSF+ISHSFL +PS+SR SNVCSFSVRASSA+KK VLIVNTNSGGHA+IGFYFAKQL
Subjt:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL

Query:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
        LGSGHEVTILTVGEE SDKMKKPPFNRFSEIVSAGGKTVWG PAEVGKVVAGASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP

Query:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD
        HVEGDTVKA+AGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAH RDLSSMLTLAVEK DEA +NIFNCVSD
Subjt:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA
        RAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFRNMHFYAEPRAA++ILGWK +TNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKV 
Subjt:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA

Query:  VAA
        VAA
Subjt:  VAA

XP_038888331.1 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic-like [Benincasa hispida]

6.7e-207

92.04

Show/hide

Query:  MAALASSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQLL
        MAALASSSSLFSSKPSIHL  SLSP  P LSL   SHPS LSSS SISHSFLSYPS  RPSNVCSFSVRA+S +KKKVLIVNTNSGGHA+IGFYFAKQLL
Subjt:  MAALASSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQLL

Query:  GSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH
        GSGHEVTILTVGEE SDKMKKPPFNRFSEIVS GGKTVWGDPAE+GKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH
Subjt:  GSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPH

Query:  VEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDR
        VEGD VKA+AGHVGVE+YIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVR+RPVPIPGSGMQLTNIAH RDLSSMLTLAVEK DEAHSNIFNCVSDR
Subjt:  VEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDR

Query:  AVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVAV
        AVTLDGMAKLCAQAAGR V+IVH+DPKAVG+DAKKAFPFRNMHFYAEPRAA+DILGWKGTTNLPEDLKERFEEYVKIGRDKK IKFELDDKILESLKV V
Subjt:  AVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVAV

Query:  AA
        AA
Subjt:  AA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLW3 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

2.2e-195

86.98

Show/hide

Query:  MAALASSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHS-FLS-YPSTS---RPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYF
        MAAL  SSSLFSSKPSI+    +SP    LSL   S+ S +SSSFSISHS FLS Y S+S   RPS VCSFSVRASS+ KKKVLIVNTNSGGHA+IGFYF
Subjt:  MAALASSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHS-FLS-YPSTS---RPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYF

Query:  AKQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
        AK+LLGSGHEVTILTVGE+ SDKM KPPFNRFSEIVS GGKTVWGDPAE+GKV+ GASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
Subjt:  AKQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT

Query:  DEPPHVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFN
        DEPPHVEGD VKA+AGHVGVE+Y+AEVF SWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAH RDLSSMLTLAVEK DEAHSNIFN
Subjt:  DEPPHVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFN

Query:  CVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILES
        CV+DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFRNMHFYAEPRAA++ILGWK TTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILES
Subjt:  CVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILES

Query:  LKVAVAA
        LKV VAA
Subjt:  LKVAVAA

A0A5D3E2H3 Chloroplast stem-loop binding protein of 41 kDa a

2.2e-195

86.98

Show/hide

Query:  MAALASSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHS-FLS-YPSTS---RPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYF
        MAAL  SSSLFSSKPSI+    +SP    LSL   S+ S +SSSFSISHS FLS Y S+S   RPS VCSFSVRASS+ KKKVLIVNTNSGGHA+IGFYF
Subjt:  MAALASSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHS-FLS-YPSTS---RPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYF

Query:  AKQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
        AK+LLGSGHEVTILTVGE+ SDKM KPPFNRFSEIVS GGKTVWGDPAE+GKV+ GASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT
Subjt:  AKQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPT

Query:  DEPPHVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFN
        DEPPHVEGD VKA+AGHVGVE+Y+AEVF SWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAH RDLSSMLTLAVEK DEAHSNIFN
Subjt:  DEPPHVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFN

Query:  CVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILES
        CV+DRAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFRNMHFYAEPRAA++ILGWK TTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILES
Subjt:  CVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILES

Query:  LKVAVAA
        LKV VAA
Subjt:  LKVAVAA

A0A6J1DN04 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

4.9e-203

90.5

Show/hide

Query:  MAALASSSSLFSSKPSIHLTPSLSPCLPRLSLSHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAE-KKKVLIVNTNSGGHAIIGFYFAKQLLGS
        MAALASS SLFSS PSIHL PS+SP LPRLSLS PSALSS+FSISHSF S+PS SRPSNV SF++RA+SA+ KKKVLIVNTNSGGHAIIGFYFAKQLLGS
Subjt:  MAALASSSSLFSSKPSIHLTPSLSPCLPRLSLSHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAE-KKKVLIVNTNSGGHAIIGFYFAKQLLGS

Query:  GHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE
        GHEVTILTVGE+GSDKM KPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKD++TV PVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE
Subjt:  GHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVE

Query:  GDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDRAV
        GDTV ANA HVGVE+YIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAH RDLSSMLTLAVEK DEAHSNIFNCVS RAV
Subjt:  GDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDRAV

Query:  TLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVAVAA
        TLDGMAKLCAQAAGRSV IVHYDPKAVGIDAKKAFPFR  HFYAEPRAA+DILGWKG T LP+DLKERFEEYVKIGRDKK+I+F+LDDKILESLKV VAA
Subjt:  TLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVAVAA

A0A6J1HIM8 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

6.8e-205

90.57

Show/hide

Query:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL
        MAALA SSSSLF+SKPSIHL  SLSPCL R SL   S  SAL+SSF+ISHSFL +PS+SR SNVCSFSVRASSA+KK VLIVNTNSGGHA+IGFYFAKQL
Subjt:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLSL---SHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL

Query:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
        LGSGHEVTILTVGEE SDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP

Query:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD
        HVEGDTVKA+AGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNI+H RDLSSMLTLAVEK DEAH+NIFNCVSD
Subjt:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA
        RAVTLDGMAKLCAQAAGR VNIVHYDPKAVG+DAKKAFPFRNMHFYAEPRAA++ILGWK +TNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKV 
Subjt:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA

Query:  VAA
        VAA
Subjt:  VAA

A0A6J1HUG4 chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

2.3e-205

90.57

Show/hide

Query:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLS---LSHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL
        MAALA SSSSLF+SKPSIHL  SLSPCL R S   +S PSAL+SSF+ISHSFL +PS+SR SNVCSFSVRASSA+KK VLIVNTNSGGHA+IGFYFAKQL
Subjt:  MAALA-SSSSLFSSKPSIHLTPSLSPCLPRLS---LSHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQL

Query:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
        LGSGHEVTILTVGEE SDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDID+VRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP
Subjt:  LGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPP

Query:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD
        HVEGDTVKA+AGHVGVE+YIAEVF SWA+FRPQYMIGSGNNKDCEEWFFDRIVRDRP+PIPGSGMQLTNIAH RDLSSMLTLAVEK DEAH+NIFNCVSD
Subjt:  HVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSD

Query:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA
        RAVTLDGMAKLCAQAAGR VNIVHYDPK VG+DAKKAFPFRNMHFYAEPRAA++ILGWK +TNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKV 
Subjt:  RAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVA

Query:  VAA
        VAA
Subjt:  VAA

SwissProt top hits

e value

%identity

Alignment

Q9LYA9 Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic

1.4e-167

75.37

Show/hide

Query:  MAALASSSSLFSSKPSIHLTPSL-SPCLPRLSL----SHPSALSSSFSISHSFLSYP-STSRPSNVCSFSVRASS-AEKKKVLIVNTNSGGHAIIGFYFA
        MAAL+SSS  FSSK +  ++  L  P L R SL    S  S+LSSS S S S L++   TSR  +   F+V+ASS  EKK VLIVNTNSGGHA+IGFYFA
Subjt:  MAALASSSSLFSSKPSIHLTPSL-SPCLPRLSL----SHPSALSSSFSISHSFLSYP-STSRPSNVCSFSVRASS-AEKKKVLIVNTNSGGHAIIGFYFA

Query:  KQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTD
        K+LL +GH VTILTVG+E S+KMKKPPFNRFSEIVS GGKTVWG+PA V  VV G +FDVVLDNNGKD+DTVRPV+DWAKSSGVKQFLFISSAGIYK T+
Subjt:  KQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTD

Query:  EPPHVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNC
        +PPHVEGD VKA+AGHV VE+Y+AE FG+WA FRPQYMIGSGNNKDCEEWFFDRIVRDR VPIPGSG+QLTNI+H RDLSSMLT AV   + A  NIFNC
Subjt:  EPPHVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNC

Query:  VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESL
        VSDRAVTLDGMAKLCA AAG++V IVHYDPKA+G+DAKKAF FRNMHFYAEPRAA+D+LGW+  TNLPEDLKERFEEYVKIGRDKK IKFELDDKILE+L
Subjt:  VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESL

Query:  KVAVAA
        K  VAA
Subjt:  KVAVAA

Q9SA52 Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic

7.8e-49

34.94

Show/hide

Query:  SSAEKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVW--GDPAE---VGKVVAGASFDVVLDNNGKDI
        S++ +KK+LI+    GG   IG + ++ L+  GH+VT+ T G+  S   K+ P     +      K +   GD  +   V   ++   FDVV D NG++ 
Subjt:  SSAEKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVW--GDPAE---VGKVVAGASFDVVLDNNGKDI

Query:  DTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKANAGHVG---VEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGS
        + V P+++      ++Q+++ SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RP+P+P S
Subjt:  DTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKANAGHVG---VEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGS

Query:  GMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDRAVTLDGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTT
        G+Q++ + H +DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G     IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK   
Subjt:  GMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDRAVTLDGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTT

Query:  NLPEDLKERFEEYVKIGRDKKAIKFELDDKIL
        +L E L + +      G  +K   F  DD IL
Subjt:  NLPEDLKERFEEYVKIGRDKKAIKFELDDKIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G09340.1 chloroplast RNA binding

5.5e-50

34.94

Show/hide

Query:  SSAEKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVW--GDPAE---VGKVVAGASFDVVLDNNGKDI
        S++ +KK+LI+    GG   IG + ++ L+  GH+VT+ T G+  S   K+ P     +      K +   GD  +   V   ++   FDVV D NG++ 
Subjt:  SSAEKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVW--GDPAE---VGKVVAGASFDVVLDNNGKDI

Query:  DTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKANAGHVG---VEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGS
        + V P+++      ++Q+++ SSAG+Y  +D  PH E D V   + H G    E  +     +W   RP Y+ G  N    EEWFF R+   RP+P+P S
Subjt:  DTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKANAGHVG---VEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGS

Query:  GMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDRAVTLDGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTT
        G+Q++ + H +DL++   L V   ++A   IFN   ++ VT DG+AK CA+A G     IVHY+PK      KKAFPFR+ HF+A    A+ +LGWK   
Subjt:  GMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDRAVTLDGMAKLCAQAAG-RSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTT

Query:  NLPEDLKERFEEYVKIGRDKKAIKFELDDKIL
        +L E L + +      G  +K   F  DD IL
Subjt:  NLPEDLKERFEEYVKIGRDKKAIKFELDDKIL

AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa

1.0e-168

75.37

Show/hide

Query:  MAALASSSSLFSSKPSIHLTPSL-SPCLPRLSL----SHPSALSSSFSISHSFLSYP-STSRPSNVCSFSVRASS-AEKKKVLIVNTNSGGHAIIGFYFA
        MAAL+SSS  FSSK +  ++  L  P L R SL    S  S+LSSS S S S L++   TSR  +   F+V+ASS  EKK VLIVNTNSGGHA+IGFYFA
Subjt:  MAALASSSSLFSSKPSIHLTPSL-SPCLPRLSL----SHPSALSSSFSISHSFLSYP-STSRPSNVCSFSVRASS-AEKKKVLIVNTNSGGHAIIGFYFA

Query:  KQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTD
        K+LL +GH VTILTVG+E S+KMKKPPFNRFSEIVS GGKTVWG+PA V  VV G +FDVVLDNNGKD+DTVRPV+DWAKSSGVKQFLFISSAGIYK T+
Subjt:  KQLLGSGHEVTILTVGEEGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTD

Query:  EPPHVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNC
        +PPHVEGD VKA+AGHV VE+Y+AE FG+WA FRPQYMIGSGNNKDCEEWFFDRIVRDR VPIPGSG+QLTNI+H RDLSSMLT AV   + A  NIFNC
Subjt:  EPPHVEGDTVKANAGHVGVEEYIAEVFGSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNC

Query:  VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESL
        VSDRAVTLDGMAKLCA AAG++V IVHYDPKA+G+DAKKAF FRNMHFYAEPRAA+D+LGW+  TNLPEDLKERFEEYVKIGRDKK IKFELDDKILE+L
Subjt:  VSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDAKKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESL

Query:  KVAVAA
        K  VAA
Subjt:  KVAVAA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGCTCTTGCTTCTTCATCTTCCCTCTTCTCGTCTAAGCCCTCCATCCATCTTACACCTTCTCTTTCTCCTTGTCTTCCTCGTCTATCACTCTCTCACCCTTCTGC
TCTTTCATCCTCTTTCTCCATTTCCCATTCTTTTCTCTCTTACCCTTCCACTTCCAGACCCTCCAATGTTTGCTCCTTCAGTGTCAGGGCTAGCTCTGCTGAGAAAAAAA
AGGTCTTGATTGTCAACACAAACAGCGGTGGACATGCAATAATTGGCTTCTATTTTGCAAAACAGCTTCTGGGTTCCGGCCATGAAGTCACAATTTTGACTGTCGGTGAA
GAGGGTTCAGACAAGATGAAGAAGCCTCCATTTAACAGATTCTCAGAAATTGTGAGTGCTGGAGGCAAGACGGTGTGGGGGGATCCAGCAGAAGTTGGGAAGGTTGTGGC
AGGAGCATCATTTGATGTGGTATTAGATAACAATGGCAAGGATATTGACACAGTGAGGCCTGTCATTGATTGGGCAAAGAGCTCTGGTGTGAAGCAGTTTCTATTTATCA
GCAGTGCTGGAATTTATAAGCCAACTGATGAGCCTCCTCATGTTGAAGGGGATACTGTTAAAGCCAATGCTGGTCATGTTGGTGTTGAAGAATATATTGCAGAGGTTTTC
GGCAGCTGGGCTATTTTCCGTCCACAGTACATGATTGGATCCGGCAACAACAAGGATTGTGAAGAGTGGTTCTTTGATCGAATCGTCCGGGACAGGCCCGTTCCAATTCC
AGGCTCTGGGATGCAGCTGACGAACATCGCTCATGCCAGGGACTTGTCTTCCATGTTGACACTAGCAGTAGAGAAGGCAGATGAAGCACACTCTAACATATTCAACTGCG
TAAGCGATCGGGCCGTGACTCTTGATGGTATGGCCAAGCTATGTGCTCAAGCGGCAGGGCGTTCGGTCAACATTGTGCATTATGATCCAAAAGCAGTTGGAATTGATGCA
AAGAAGGCTTTTCCTTTCAGGAATATGCATTTCTATGCAGAGCCAAGAGCAGCCGAGGATATTTTAGGGTGGAAAGGTACCACAAATCTTCCTGAAGATTTGAAGGAGCG
TTTTGAAGAGTACGTGAAGATTGGTAGAGACAAGAAAGCTATAAAGTTTGAGTTGGATGATAAGATACTCGAGTCCCTAAAAGTTGCAGTAGCTGCTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAALASSSSLFSSKPSIHLTPSLSPCLPRLSLSHPSALSSSFSISHSFLSYPSTSRPSNVCSFSVRASSAEKKKVLIVNTNSGGHAIIGFYFAKQLLGSGHEVTILTVGE
EGSDKMKKPPFNRFSEIVSAGGKTVWGDPAEVGKVVAGASFDVVLDNNGKDIDTVRPVIDWAKSSGVKQFLFISSAGIYKPTDEPPHVEGDTVKANAGHVGVEEYIAEVF
GSWAIFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGMQLTNIAHARDLSSMLTLAVEKADEAHSNIFNCVSDRAVTLDGMAKLCAQAAGRSVNIVHYDPKAVGIDA
KKAFPFRNMHFYAEPRAAEDILGWKGTTNLPEDLKERFEEYVKIGRDKKAIKFELDDKILESLKVAVAA

Lag0007566 (gene) of Sponge gourd (AG-4) v1 genome