| GenBank top hits | e value | %identity | Alignment |
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| PNX96445.1 copia LTR rider [Trifolium pratense] | 5.1e-43 | 68.6 | Show/hide |
Query: ATHGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKL
A G ARH T AG PQQNG AER+NRTILE+VRCML+++ L ++FW EAVST YLINR PSTAL+ KTP+E+WSGHPP L L VFGC AYAH RQDK+
Subjt: ATHGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKL
Query: QPRAKKCVFIGYSQGVKAYKL
+PRA KC+F+GY +GVKAY+L
Subjt: QPRAKKCVFIGYSQGVKAYKL
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| RVW99173.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.3e-43 | 54.17 | Show/hide |
Query: KNRLDYIHSDLWGPSRIATHGG------------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTV
+N+LDYIHSDLWGPSR+ + GG A H T PQQNG AER NRTILE++RCMLS+S L ++FW EA TV
Subjt: KNRLDYIHSDLWGPSRIATHGG------------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTV
Query: VYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
V+LINRSPS+AL FKTPQE W+G +HL VFGC AY HT+ DKL+PRA KC+F+GY +GVK YKL
Subjt: VYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
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| RZB42800.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja] | 1.4e-48 | 57.32 | Show/hide |
Query: LDYIHSDLWGPSRIATHGG-----------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLI
LDY+H+D WGP++ +H G ARH T AG PQQNG AER+NRTILE+VRCML ++ LP+IFW EA VVYLI
Subjt: LDYIHSDLWGPSRIATHGG-----------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLI
Query: NRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
N+ PST LNFKTP+EIWSGHPP LK L VFGC AYAH +QDKL+PRA KC+F+GY +GVK YKL
Subjt: NRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
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| RZB65625.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja] | 1.2e-47 | 56.29 | Show/hide |
Query: KNRLDYIHSDLWGPSRIATHGG-----------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVV
K LDY+H+DLWG ++ +H G ARH T AG PQQNG AER+NRTIL++VRCM + LP+IFW EA T V
Subjt: KNRLDYIHSDLWGPSRIATHGG-----------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVV
Query: YLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
YLIN+ PSTALNFKTP+EIWSGHPP LK L VFGC AYAH +QDKL+PRA KC+F+GY +GVK YKL
Subjt: YLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
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| RZB80697.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja] | 6.6e-43 | 71.43 | Show/hide |
Query: HGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQP
+G ARH T AG PQQNG AER+N TILE+VRCML ++ LP+IF EA TVVYLIN+ PSTALNFKTP+EIWSGHPP LK L VFGC AYAH +QDKL+P
Subjt: HGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQP
Query: RAKKCVFIGYSQGVKAYKL
RA KC+F+GY +GVK YKL
Subjt: RAKKCVFIGYSQGVKAYKL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2K3N065 Copia LTR rider | 2.5e-43 | 68.6 | Show/hide |
Query: ATHGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKL
A G ARH T AG PQQNG AER+NRTILE+VRCML+++ L ++FW EAVST YLINR PSTAL+ KTP+E+WSGHPP L L VFGC AYAH RQDK+
Subjt: ATHGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKL
Query: QPRAKKCVFIGYSQGVKAYKL
+PRA KC+F+GY +GVKAY+L
Subjt: QPRAKKCVFIGYSQGVKAYKL
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| A0A438IR25 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.5e-44 | 54.17 | Show/hide |
Query: KNRLDYIHSDLWGPSRIATHGG------------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTV
+N+LDYIHSDLWGPSR+ + GG A H T PQQNG AER NRTILE++RCMLS+S L ++FW EA TV
Subjt: KNRLDYIHSDLWGPSRIATHGG------------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTV
Query: VYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
V+LINRSPS+AL FKTPQE W+G +HL VFGC AY HT+ DKL+PRA KC+F+GY +GVK YKL
Subjt: VYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
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| A0A445F227 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.7e-49 | 57.32 | Show/hide |
Query: LDYIHSDLWGPSRIATHGG-----------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLI
LDY+H+D WGP++ +H G ARH T AG PQQNG AER+NRTILE+VRCML ++ LP+IFW EA VVYLI
Subjt: LDYIHSDLWGPSRIATHGG-----------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLI
Query: NRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
N+ PST LNFKTP+EIWSGHPP LK L VFGC AYAH +QDKL+PRA KC+F+GY +GVK YKL
Subjt: NRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
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| A0A445GWE1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.6e-48 | 56.29 | Show/hide |
Query: KNRLDYIHSDLWGPSRIATHGG-----------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVV
K LDY+H+DLWG ++ +H G ARH T AG PQQNG AER+NRTIL++VRCM + LP+IFW EA T V
Subjt: KNRLDYIHSDLWGPSRIATHGG-----------------------------ARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVV
Query: YLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
YLIN+ PSTALNFKTP+EIWSGHPP LK L VFGC AYAH +QDKL+PRA KC+F+GY +GVK YKL
Subjt: YLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKKCVFIGYSQGVKAYKL
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| A0A445I3R1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.2e-43 | 71.43 | Show/hide |
Query: HGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQP
+G ARH T AG PQQNG AER+N TILE+VRCML ++ LP+IF EA TVVYLIN+ PSTALNFKTP+EIWSGHPP LK L VFGC AYAH +QDKL+P
Subjt: HGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQP
Query: RAKKCVFIGYSQGVKAYKL
RA KC+F+GY +GVK YKL
Subjt: RAKKCVFIGYSQGVKAYKL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.7e-23 | 50.44 | Show/hide |
Query: GGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTAL--NFKTPQEIWSGHPPCLKHLHVFGCAAYAH--TRQDK
G + HLT PQ NG +ER RTI EK R M+S +KL + FWGEAV T YLINR PS AL + KTP E+W P LKHL VFG Y H +Q K
Subjt: GGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTAL--NFKTPQEIWSGHPPCLKHLHVFGCAAYAH--TRQDK
Query: LQPRAKKCVFIGY
++ K +F+GY
Subjt: LQPRAKKCVFIGY
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.1e-28 | 49.19 | Show/hide |
Query: ATHGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHT---RQ
++HG T G PQ NG AER NRTI+EKVR ML +KLP+ FWGEAV T YLINRSPS L F+ P+ +W+ HL VFGC A+AH ++
Subjt: ATHGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHT---RQ
Query: DKLQPRAKKCVFIGYSQGVKAYKL
KL ++ C+FIGY Y+L
Subjt: DKLQPRAKKCVFIGYSQGVKAYKL
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| P92512 Uncharacterized mitochondrial protein AtMg00710 | 4.5e-18 | 51.22 | Show/hide |
Query: NRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKK
NRTI+EKVR ML LP+ F +A +T V++IN+ PSTA+NF P E+W P +L FGC AY H + KL+PRAKK
Subjt: NRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTRQDKLQPRAKK
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 8.5e-17 | 39.5 | Show/hide |
Query: GARHLTAAGN-PQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTR---QDKL
G HLT+ + P+ NG +ER +R I+E +LS++ +P+ +W A + VYLINR P+ L ++P + G P L VFGCA Y R Q KL
Subjt: GARHLTAAGN-PQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHPPCLKHLHVFGCAAYAHTR---QDKL
Query: QPRAKKCVFIGYSQGVKAY
++++CVF+GYS AY
Subjt: QPRAKKCVFIGYSQGVKAY
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.0e-18 | 34.72 | Show/hide |
Query: KNRLDYIHSDLWGP-----SRIATHGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHP
+ R+ ++SD G ++ HG + + P+ NG +ER +R I+E +LS++ +P+ +W A S VYLINR P+ L ++P + G P
Subjt: KNRLDYIHSDLWGP-----SRIATHGGARHLTAAGNPQQNGFAERYNRTILEKVRCMLSNSKLPRIFWGEAVSTVVYLINRSPSTALNFKTPQEIWSGHP
Query: PCLKHLHVFGCAAYAHTR---QDKLQPRAKKCVFIGYSQGVKAY
P + L VFGCA Y R + KL+ ++K+C F+GYS AY
Subjt: PCLKHLHVFGCAAYAHTR---QDKLQPRAKKCVFIGYSQGVKAY
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