| GenBank top hits | e value | %identity | Alignment |
|---|
| RVW59875.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 1.1e-80 | 34.08 | Show/hide |
Query: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
ME+++ NG H+ L + Q NP+ ++W++++R+++SW+YSSL + +G+I+G SS W L ++ +SS AR+M LR + Q RK SL
Subjt: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
Query: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
T+ +Y+ K+K + D AAIGEP++ RD + +L GL ++YN V S+ R D +SL V S+LL ++ R + N A P++ + N+
Subjt: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
Query: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
+RPQCQ+CGK GHT CY+R + + NP + T ++ N + +A+ +S DE+WF D
Subjt: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
Query: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
+GATHH++ L Y GN++V+ GN K L ILH G+T PSS + ++ +L F + D ++K ILL+
Subjt: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
Query: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
G L+ GLY+ SP SS ++ LS LWHSRLG+PA I++ +L CN+ + + C CQ AKSH+LPF+VS+SR+ P AL++
Subjt: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
Query: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
+D+WGP+ + S GARYF+LF+DD++R++W+Y L
Subjt: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| RVW64314.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.1e-80 | 34.08 | Show/hide |
Query: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
ME+++ NG H+ L + Q NP+ ++W++++R+++SW+YSSL + +G+I+G SS W L ++ +SS AR+M LR + Q RK SL
Subjt: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
Query: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
T+ +Y+ K+K + D AAIGEP++ RD + +L GL ++YN V S+ R D +SL V S+LL ++ R + N A P++ + N+
Subjt: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
Query: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
+RPQCQ+CGK GHT CY+R + + NP + T ++ N + +A+ +S DE+WF D
Subjt: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
Query: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
+GATHH++ L Y GN++V+ GN K L ILH G+T PSS + ++ +L F + D ++K ILL+
Subjt: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
Query: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
G L+ GLY+ SP SS ++ LS LWHSRLG+PA I++ +L CN+ + + C CQ AKSH+LPF+VS+SR+ P AL++
Subjt: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
Query: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
+D+WGP+ + S GARYF+LF+DD++R++W+Y L
Subjt: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 4.6e-95 | 41.89 | Show/hide |
Query: FLDVAQTQVNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSLTVSQYLAKIKDIIDQFAAIGE
+LD A QVNP + W + N+++MSW+YSSL +G+I+ ++ +IW L YES S A +M+L S+LQ+++K + +S+YL+++K + D+FA IGE
Subjt: FLDVAQTQVNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSLTVSQYLAKIKDIIDQFAAIGE
Query: PLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDARSTTNS---------APPKWPNDNSNRPQCQICGKLGHTAFVCYNRHNPLYHA
PLSYRD L ILEGL EY+ FVTSI NR+D SL +V SLL Y+ R + S A P+ P N++ PQCQICGK GH A Y+R N YH
Subjt: PLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDARSTTNS---------APPKWPNDNSNRPQCQICGKLGHTAFVCYNRHNPLYHA
Query: SNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMDSGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSR
P AF T+S S++ T S S D SW+MDSGATHH TP+ ++ + Y + + GNDK + I H+G + SS+
Subjt: SNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMDSGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSR
Query: NVKLIL----------------------------FCILLDLLSKTILLRGHLDGGLYKLSTPS-------HRSPGSSSQPA----ALLSTFQDVQLWHSR
++ +L F ++ D +K +LL+GHL+ GLYKL+ P+ SP + PA A LS V LWH+R
Subjt: NVKLIL----------------------------FCILLDLLSKTILLRGHLDGGLYKLSTPS-------HRSPGSSSQPA----ALLSTFQDVQLWHSR
Query: LGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWL
LG+PA +V +VL+ CNL F S C+ CQLAKSHRLPF +S SR+ +PF L+YSD+WGPSP+ S+ G +YFLLFID++TR+TWL
Subjt: LGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWL
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| RVX01903.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 4.5e-82 | 34.64 | Show/hide |
Query: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
ME+++ NG H+ L + Q NP+ ++W++++R+++SW+YSSL + +G+I+G SS W L ++ +SS AR+M LR + Q RK SL
Subjt: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
Query: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
T+ +Y+ K+K + D AAIGEP++ RD + +L GL ++YN V S+ R D +SL V S+LL ++ R + N A P++ + N+
Subjt: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
Query: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
+RPQCQ+CGK GHT CY+R + + NP + T ++ N + +A+ +S DE+WF D
Subjt: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
Query: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL--------------FC--------------ILLDLLSKTILLR
+GATHH++ L Y GN++V+ GN K L ILH G+T PSS + ++ +L FC + D ++K ILL+
Subjt: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL--------------FC--------------ILLDLLSKTILLR
Query: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
G L+ GLY+ SP SS ++ LS LWHSRLG+PA I++ +L CN+P + + C CQ AKSH+LPF+VS+SR+ P AL++
Subjt: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
Query: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
+D+WGP+ + S GARYF+LF+DD++RY+W+Y L
Subjt: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| RVX06084.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.1e-80 | 34.08 | Show/hide |
Query: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
ME+++ NG H+ L + Q NP+ ++W++++R+++SW+YSSL + +G+I+G SS W L ++ +SS AR+M LR + Q RK SL
Subjt: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
Query: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
T+ +Y+ K+K + D AAIGEP++ RD + +L GL ++YN V S+ R D +SL V S+LL ++ R + N A P++ + N+
Subjt: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
Query: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
+RPQCQ+CGK GHT CY+R + + NP + T ++ N + +A+ +S DE+WF D
Subjt: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
Query: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
+GATHH++ L Y GN++V+ GN K L ILH G+T PSS + ++ +L F + D ++K ILL+
Subjt: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
Query: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
G L+ GLY+ SP SS ++ LS LWHSRLG+PA I++ +L CN+ + + C CQ AKSH+LPF+VS+SR+ P AL++
Subjt: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
Query: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
+D+WGP+ + S GARYF+LF+DD++R++W+Y L
Subjt: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438FIP9 Retrovirus-related Pol polyprotein from transposon RE1 | 5.4e-81 | 34.08 | Show/hide |
Query: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
ME+++ NG H+ L + Q NP+ ++W++++R+++SW+YSSL + +G+I+G SS W L ++ +SS AR+M LR + Q RK SL
Subjt: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
Query: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
T+ +Y+ K+K + D AAIGEP++ RD + +L GL ++YN V S+ R D +SL V S+LL ++ R + N A P++ + N+
Subjt: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
Query: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
+RPQCQ+CGK GHT CY+R + + NP + T ++ N + +A+ +S DE+WF D
Subjt: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
Query: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
+GATHH++ L Y GN++V+ GN K L ILH G+T PSS + ++ +L F + D ++K ILL+
Subjt: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
Query: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
G L+ GLY+ SP SS ++ LS LWHSRLG+PA I++ +L CN+ + + C CQ AKSH+LPF+VS+SR+ P AL++
Subjt: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
Query: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
+D+WGP+ + S GARYF+LF+DD++R++W+Y L
Subjt: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| A0A438FWJ3 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.4e-81 | 34.08 | Show/hide |
Query: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
ME+++ NG H+ L + Q NP+ ++W++++R+++SW+YSSL + +G+I+G SS W L ++ +SS AR+M LR + Q RK SL
Subjt: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
Query: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
T+ +Y+ K+K + D AAIGEP++ RD + +L GL ++YN V S+ R D +SL V S+LL ++ R + N A P++ + N+
Subjt: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
Query: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
+RPQCQ+CGK GHT CY+R + + NP + T ++ N + +A+ +S DE+WF D
Subjt: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
Query: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
+GATHH++ L Y GN++V+ GN K L ILH G+T PSS + ++ +L F + D ++K ILL+
Subjt: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
Query: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
G L+ GLY+ SP SS ++ LS LWHSRLG+PA I++ +L CN+ + + C CQ AKSH+LPF+VS+SR+ P AL++
Subjt: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
Query: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
+D+WGP+ + S GARYF+LF+DD++R++W+Y L
Subjt: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE1 | 2.3e-95 | 41.89 | Show/hide |
Query: FLDVAQTQVNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSLTVSQYLAKIKDIIDQFAAIGE
+LD A QVNP + W + N+++MSW+YSSL +G+I+ ++ +IW L YES S A +M+L S+LQ+++K + +S+YL+++K + D+FA IGE
Subjt: FLDVAQTQVNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSLTVSQYLAKIKDIIDQFAAIGE
Query: PLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDARSTTNS---------APPKWPNDNSNRPQCQICGKLGHTAFVCYNRHNPLYHA
PLSYRD L ILEGL EY+ FVTSI NR+D SL +V SLL Y+ R + S A P+ P N++ PQCQICGK GH A Y+R N YH
Subjt: PLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDARSTTNS---------APPKWPNDNSNRPQCQICGKLGHTAFVCYNRHNPLYHA
Query: SNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMDSGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSR
P AF T+S S++ T S S D SW+MDSGATHH TP+ ++ + Y + + GNDK + I H+G + SS+
Subjt: SNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMDSGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSR
Query: NVKLIL----------------------------FCILLDLLSKTILLRGHLDGGLYKLSTPS-------HRSPGSSSQPA----ALLSTFQDVQLWHSR
++ +L F ++ D +K +LL+GHL+ GLYKL+ P+ SP + PA A LS V LWH+R
Subjt: NVKLIL----------------------------FCILLDLLSKTILLRGHLDGGLYKLSTPS-------HRSPGSSSQPA----ALLSTFQDVQLWHSR
Query: LGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWL
LG+PA +V +VL+ CNL F S C+ CQLAKSHRLPF +S SR+ +PF L+YSD+WGPSP+ S+ G +YFLLFID++TR+TWL
Subjt: LGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWL
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| A0A438IYY8 Retrovirus-related Pol polyprotein from transposon RE1 | 2.2e-82 | 34.64 | Show/hide |
Query: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
ME+++ NG H+ L + Q NP+ ++W++++R+++SW+YSSL + +G+I+G SS W L ++ +SS AR+M LR + Q RK SL
Subjt: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
Query: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
T+ +Y+ K+K + D AAIGEP++ RD + +L GL ++YN V S+ R D +SL V S+LL ++ R + N A P++ + N+
Subjt: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
Query: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
+RPQCQ+CGK GHT CY+R + + NP + T ++ N + +A+ +S DE+WF D
Subjt: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
Query: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL--------------FC--------------ILLDLLSKTILLR
+GATHH++ L Y GN++V+ GN K L ILH G+T PSS + ++ +L FC + D ++K ILL+
Subjt: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL--------------FC--------------ILLDLLSKTILLR
Query: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
G L+ GLY+ SP SS ++ LS LWHSRLG+PA I++ +L CN+P + + C CQ AKSH+LPF+VS+SR+ P AL++
Subjt: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
Query: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
+D+WGP+ + S GARYF+LF+DD++RY+W+Y L
Subjt: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| A0A438JAU4 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 5.4e-81 | 34.08 | Show/hide |
Query: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
ME+++ NG H+ L + Q NP+ ++W++++R+++SW+YSSL + +G+I+G SS W L ++ +SS AR+M LR + Q RK SL
Subjt: MESLI--NGTSAHVHFLDVAQTQ------VNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSL
Query: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
T+ +Y+ K+K + D AAIGEP++ RD + +L GL ++YN V S+ R D +SL V S+LL ++ R + N A P++ + N+
Subjt: TVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDAR------------STTNSAPPKWPNDNS----
Query: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
+RPQCQ+CGK GHT CY+R + + NP + T ++ N + +A+ +S DE+WF D
Subjt: -----------------------NRPQCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMD
Query: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
+GATHH++ L Y GN++V+ GN K L ILH G+T PSS + ++ +L F + D ++K ILL+
Subjt: SGATHHMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLIL----------------------------FCILLDLLSKTILLR
Query: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
G L+ GLY+ SP SS ++ LS LWHSRLG+PA I++ +L CN+ + + C CQ AKSH+LPF+VS+SR+ P AL++
Subjt: GHLDGGLYKLSTPSHRSP----GSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMY
Query: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
+D+WGP+ + S GARYF+LF+DD++R++W+Y L
Subjt: SDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 9.6e-11 | 21.99 | Show/hide |
Query: WQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDS-LTVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEG
W+K R S + L++ + ++ +I E+L VYE S A +ALR +L ++ S +++ + ++I + A G + D ++++L
Subjt: WQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDS-LTVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEG
Query: LDSEYNLFVTSIQNRT-DHLSLADVKSLLL------AYDARSTTNSAPPKWPNDNSN------------------------RPQCQICGKLGHTAFVCYN
L S Y+ +T+I+ + ++L+LA VK+ LL D T+ ++N+N + +C CG+ GH C++
Subjt: LDSEYNLFVTSIQNRT-DHLSLADVKSLLL------AYDARSTTNSAPPKWPNDNSN------------------------RPQCQICGKLGHTAFVCYN
Query: RHNPLYHASNPPIPQAFFTQVQSSTN-------SSPSSVATIDNVSHPHFSAHSPH--PDESWFMDSGATHHMTPDATNLQQSTTYYGNEQVVS-GNDKS
L + + + QVQ++T+ ++ + +DN S S H DES + DS A Q Y +V ND
Subjt: RHNPLYHASNPPIPQAFFTQVQSSTN-------SSPSSVATIDNVSHPHFSAHSPH--PDESWFMDSGATHHMTPDATNLQQSTTYYGNEQVVS-GNDKS
Query: LPILHV--GSTSIPSSIPSRNVKLILFCILLDLLSKTILLRGHLDGGLYKLSTPSHRSPGSSSQPAALLSTFQ-DVQLWHSRLGNPAFPIVQRVLKVCNL
+ + V + + + + ++ I D TI G + + K S + P + Q ++ + + + +LWH R G+ + + + K N+
Subjt: LPILHV--GSTSIPSSIPSRNVKLILFCILLDLLSKTILLRGHLDGGLYKLSTPSHRSPGSSSQPAALLSTFQ-DVQLWHSRLGNPAFPIVQRVLKVCNL
Query: PFKQS-------GSQFCNYCQLAKSHRLPFSVSLSRS--CEPFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLLK
QS + C C K RLPF ++ P +++SD+ GP ++++ YF++F+D +T Y YL+K
Subjt: PFKQS-------GSQFCNYCQLAKSHRLPFSVSLSRS--CEPFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLLK
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.2e-21 | 23.17 | Show/hide |
Query: WQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVR-KDSLTVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEG
W + S + L++D + II ++ IW L +Y S + + L+ +L + + +L +I Q A +G + D +L
Subjt: WQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVR-KDSLTVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEG
Query: LDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDARS----------TTNSAPPKWPNDNSNRPQCQICGKLGHTAFV----CYNRHNPLYHASNPPIPQ--
L S Y+ T+I + + L DV S LL + T + ++N + GK + + CYN + P + + P P+
Subjt: LDSEYNLFVTSIQNRTDHLSLADVKSLLLAYDARS----------TTNSAPPKWPNDNSNRPQCQICGKLGHTAFV----CYNRHNPLYHASNPPIPQ--
Query: AFFTQVQSSTNSSPSSVATIDNV----SHPHFSAHSPHPDESWFMDSGATHHMTP-----------DATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTS
T Q + +++ + V DNV + H P+ W +D+ A+HH TP D ++ T Y ++G +VG T
Subjt: AFFTQVQSSTNSSPSSVATIDNV----SHPHFSAHSPHPDESWFMDSGATHHMTP-----------DATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTS
Query: IPSS---IPSRNVKLILFCILLD---------------LLSKTILLRGHLDGGLYKLSTPSHRSPGSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVL
+ +P + LI I LD ++ +G G LY+ + + +++Q V LWH R+G+ + +Q +
Subjt: IPSS---IPSRNVKLILFCILLD---------------LLSKTILLRGHLDGGLYKLSTPSHRSPGSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVL
Query: KVCNLPF-KQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLLK
K + + K + + C+YC K HR+ F S R L+YSD+ GP + S+ G +YF+ FIDD +R W+Y+LK
Subjt: KVCNLPF-KQSGSQFCNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLLK
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| Q12112 Transposon Ty1-NL1 Gag-Pol polyprotein | 1.6e-05 | 21.36 | Show/hide |
Query: SLTVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAY-----------------------DARSTTNSA
S + A++ +I+D+ G P++ + +I+ GL EY F+ ++R H+++AD+ S + + D+R+ TN+
Subjt: SLTVSQYLAKIKDIIDQFAAIGEPLSYRDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLLAY-----------------------DARSTTNSA
Query: PPKWPNDNSNRP-QCQICGKLGHTAFVCYNRHNP----LYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDES----WFMDSGATH
PK NS +P Q H N P + ++ PI Q+++ + T V+H + H D+ +DSGA+
Subjt: PPKWPNDNSNRP-QCQICGKLGHTAFVCYNRHNP----LYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDES----WFMDSGATH
Query: HMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLILFC--ILLDLLSKTILLRGHLDGGLYKLSTPSHRSPGSSSQPAALLSTF
+ A ++ +++ G VV +++PI +G ++ +L I DLLS L + K RS G+ P F
Subjt: HMTPDATNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLILFC--ILLDLLSKTILLRGHLDGGLYKLSTPSHRSPGSSSQPAALLSTF
Query: QDVQ---LWHSRLGNPA--------------FPIVQRVLKVCNLP-------------FKQSGSQF-------CNYCQLAKS----HRLPFSVSLSRSCE
V L S + P +P + R+L N F +S + C C + KS H + S E
Subjt: QDVQ---LWHSRLGNPA--------------FPIVQRVLKVCNLP-------------FKQSGSQF-------CNYCQLAKS----HRLPFSVSLSRSCE
Query: PFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
PF +++DI+GP L + YF+ F D+ T++ W+Y L
Subjt: PFALMYSDIWGPSPLLSINGARYFLLFIDDYTRYTWLYLL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 8.4e-47 | 27.24 | Show/hide |
Query: AQTQVNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSLTVSQYLAKIKDIIDQFAAIGEPLSY
A +VNP+ W++ ++++ S + +++ + ++ +IWE LR +Y + S + LR++L++ K + T+ Y+ + DQ A +G+P+ +
Subjt: AQTQVNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSLTVSQYLAKIKDIIDQFAAIGEPLSY
Query: RDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLL----------------------------------------AYDARSTTNSAPPKW------
+ + +LE L EY + I + +L ++ LL YD R+ N++ P W
Subjt: RDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADVKSLLL----------------------------------------AYDARSTTNSAPPKW------
Query: --PNDNSNRP---QCQICGKLGHTAFVCYNRHNPL--YHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMDSGATHHMTPDA
PN+N ++P +CQICG GH+A C + L ++ PP P FT Q N + SP+ +W +DSGATHH+T D
Subjt: --PNDNSNRP---QCQICGKLGHTAFVCYNRHNPL--YHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMDSGATHHMTPDA
Query: TNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLILFC----------------------------ILLDLLSKTILLRGHLDGGLYKLS
NL Y G + V+ + ++PI H GSTS+ + N+ IL+ + DL + LL+G LY+
Subjt: TNLQQSTTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLILFC----------------------------ILLDLLSKTILLRGHLDGGLYKLS
Query: TPSHRSPGSSSQPAALL---STFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQF--CNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLL
P +SSQP +L S+ WH+RLG+PA I+ V+ +L +F C+ C + KS+++PFS S S P +YSD+W SP+L
Subjt: TPSHRSPGSSSQPAALL---STFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQF--CNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLL
Query: SINGARYFLLFIDDYTRYTWLYLLK
S + RY+++F+D +TRYTWLY LK
Subjt: SINGARYFLLFIDDYTRYTWLYLLK
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.0e-41 | 25.53 | Show/hide |
Query: AQTQVNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSLTVSQYLAKIKDIIDQFAAIGEPLSY
A +VNP+ W++ ++++ S + +++ + ++ +IWE LR +Y + S + LR ++ + DQ A +G+P+ +
Subjt: AQTQVNPNCLVWQKYNRILMSWMYSSLNEDKIGEIIGCGSSFEIWEHLRVVYESSSTARLMALRSKLQKVRKDSLTVSQYLAKIKDIIDQFAAIGEPLSY
Query: RDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADV-------KSLLLAYDA-------------------RSTTNSAPPKWPNDNSNRP------------
+ + +LE L +Y + I + SL ++ +S LLA ++ R+ N + N+N+NR
Subjt: RDHLAYILEGLDSEYNLFVTSIQNRTDHLSLADV-------KSLLLAYDA-------------------RSTTNSAPPKWPNDNSNRP------------
Query: ----------QCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMDSGATHHMTPDATNLQQ
+CQIC GH+A C H Q QS+TN S+ + + +SP+ +W +DSGATHH+T D NL
Subjt: ----------QCQICGKLGHTAFVCYNRHNPLYHASNPPIPQAFFTQVQSSTNSSPSSVATIDNVSHPHFSAHSPHPDESWFMDSGATHHMTPDATNLQQ
Query: STTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLILFC----------------------------ILLDLLSKTILLRGHLDGGLYKLSTPSHR
Y G + V+ + ++PI H GS S+P+S S ++ +L+ + DL + LL+G LY+ S +
Subjt: STTYYGNEQVVSGNDKSLPILHVGSTSIPSSIPSRNVKLILFC----------------------------ILLDLLSKTILLRGHLDGGLYKLSTPSHR
Query: SPGSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQF--CNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLLSINGARYF
+ + P + + WHSRLG+P+ I+ V+ +LP + C+ C + KSH++PFS S S +P +YSD+W SP+LSI+ RY+
Subjt: SPGSSSQPAALLSTFQDVQLWHSRLGNPAFPIVQRVLKVCNLPFKQSGSQF--CNYCQLAKSHRLPFSVSLSRSCEPFALMYSDIWGPSPLLSINGARYF
Query: LLFIDDYTRYTWLYLLK
++F+D +TRYTWLY LK
Subjt: LLFIDDYTRYTWLYLLK
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