; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007640 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007640
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr9:2321417..2323069
RNA-Seq ExpressionLag0007640
SyntenyLag0007640
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023902041.1 uncharacterized protein LOC112013897 [Quercus suber]1.2e-6345.86Show/hide
Query:  ISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVI
        IS+V+ A+P KVT EMN  L+Q F REEIE  +   HPTKAPG D+F ++ +  + K  K G+AA+KLDMSK YDRVEW +++++M+K+GFH KW+ +V+
Subjt:  ISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVI

Query:  ECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFEFGIFNGLLHDYE
         C+++ ++SI++NG A G I  +RG R+GDP+SPY+FLL ++G SS++N  +R  R+ G+ + R  P +THLFFADD+L+F KA++ E      +L  YE
Subjt:  ECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFEFGIFNGLLHDYE

Query:  KASGQCVNFGKSIIFYSPSVGLDQK-EFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
         ASGQ +N  KS +F+S +   +++ E L  + HMQ       YLGL S   +SK + F  + +RV
Subjt:  KASGQCVNFGKSIIFYSPSVGLDQK-EFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

XP_023917066.1 uncharacterized protein LOC112028602 [Quercus suber]5.2e-5943.17Show/hide
Query:  FHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKIMQK
        F++ +      +I +V  A+P KVT EMN+ L++ F REE+   +K  HP KAPGPD    V         K G+ A+KLDMSKT+DRVEW ++ K+M++
Subjt:  FHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKIMQK

Query:  LGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFE
        +GF  +W D+V++C++  ++SI++NG A  +I  SRGFR+GDP SP LFLL +EGLS++I++ +R+  + GI + R  P +THLFFA+DS+ F KA+  E
Subjt:  LGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFE

Query:  FGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFIL-HMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
          +   +L  YE+AS Q +N  KS IF+SP+   + ++ +  IL HMQ    +  YLGL S   RSKS+ F  + ++V
Subjt:  FGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFIL-HMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

XP_024178392.1 uncharacterized protein LOC112184366 [Rosa chinensis]1.1e-5940.61Show/hide
Query:  QLLPSNCRCFIVGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSK
        Q+ PS  +  ++         +  ++  I+ ++ A P KV+ E+N+ L+QP+  EEI+  +   HP+K+PGPD+  V  F    ++   G+ +LKLD+SK
Subjt:  QLLPSNCRCFIVGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSK

Query:  TYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHL
         YDR+EW YL+ I+ KLGFH  W+ MV+  V++ ++SI++ GE   HI+ +RG R+GDPLSPYLF+L +EGLS++I +  +SN ++G+ +   APT+ HL
Subjt:  TYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHL

Query:  FFADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
        FFADDSL+F  A+  E   F  +L+ YE+A GQ VNF KS + +S +V +D +  L  IL +   +    YLGL     +SK+  F YI D++
Subjt:  FFADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

XP_030958760.1 uncharacterized protein LOC115980671 [Quercus lobata]4.3e-6141.13Show/hide
Query:  VGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLR
        V +  F   +   +  +I++V+ A+  KV+ EMN  L++ F REE+E  +K  HP+K+PGPD+F ++ +  + K  K  Y A+KLDMSK +DRVEW ++ 
Subjt:  VGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLR

Query:  KIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLK
        ++M KLGFH  W  +++ C+++ ++S+++NG A G+I+ SRG R+GDPLSPYLFLL ++G SS+I++  R+  L G+ + R  P ++HLFFADDSL+F K
Subjt:  KIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLK

Query:  ASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
        A++ E      +L  YE  SGQ +N  KS +F+S +   +++  +  IL     +  G YLGL S   +SK++ F  I +RV
Subjt:  ASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

XP_030970961.1 uncharacterized protein LOC115991405 [Quercus lobata]1.5e-6141.49Show/hide
Query:  VGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLR
        V +  F   +   +  +I++V+ A+  KV+ EMN  L++ F REE+E  +K  HP+K+PGPD+F ++ +  + K  K  Y A+KLDMSK +DRVEW ++ 
Subjt:  VGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLR

Query:  KIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLK
        ++M KLGFH  W  +++ C+++ ++S+++NG A G+I+ SRG R+GDPLSPYLFLL ++G SS+I++  R+  L G+ + R  P ++HLFFADDSL+F K
Subjt:  KIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLK

Query:  ASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
        A++ E      +L  YE ASGQ +N  KS +F+S +   +++  +  IL     +  G YLGL S   +SK++ F  I +RV
Subjt:  ASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

TrEMBL top hitse value%identityAlignment
A0A2N9ENX3 Reverse transcriptase domain-containing protein4.2e-6243.06Show/hide
Query:  IVEFHHRHDKPSN-GEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRK
        IV ++      SN GE+ +V+  V   V+ EMN  L Q F   E+E+ +    P KAPGPD+F  +      K+ K G+ ALKLDMSK  DRVEW++L K
Subjt:  IVEFHHRHDKPSN-GEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRK

Query:  IMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKA
        IM K+GFH KWV +V+ CV + ++S+++NGE KG+   SRG R+GDP+SPYLFLL +EGL +++ R + S +++G+ ++R  P +THLFFADDS++F +A
Subjt:  IMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKA

Query:  STFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
        +  +      +L  YE+ASGQ +N  K+ IF+S S  L  ++ +   LH+  +    +YLGL S   RSKS  F  + +R+
Subjt:  STFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

A0A2N9F9E4 Reverse transcriptase domain-containing protein3.3e-5937.24Show/hide
Query:  IVEFHHRHDKPSN-GEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQR--------------NC--------------
        ++E+++     SN   +++ ++ +P  VT +MN+ L++ F+ EE+E+ IK   P+KAPGPD  P +F+Q+              +C              
Subjt:  IVEFHHRHDKPSN-GEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQR--------------NC--------------

Query:  ------------------------KRSKHGYAALKLDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPL
                                K  + G  ALKLDMSK YDRVEW+YL  +M+K+GFH KW+ +++EC+S+ ++S+++NGE  G+I  SRG R+GDPL
Subjt:  ------------------------KRSKHGYAALKLDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPL

Query:  SPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFIL
        SPYLFLL +EGL S+I +   S  ++G+ + R  P +THLFFADDSL+F KA+T      + +L  YE+ASGQ VN  K+ IF+S S+ +  +  +   L
Subjt:  SPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFIL

Query:  HMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
        ++  +     YLGL S   R+K++ F  I +RV
Subjt:  HMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

A0A2N9FBK3 Reverse transcriptase domain-containing protein4.2e-6243.06Show/hide
Query:  IVEFHHRHDKPSN-GEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRK
        IV ++      SN GE+ +V+  V   V+ EMN  L Q F   E+E+ +    P KAPGPD+F  +      K+ K G+ ALKLDMSK  DRVEW++L K
Subjt:  IVEFHHRHDKPSN-GEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRK

Query:  IMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKA
        IM K+GFH KWV +V+ CV + ++S+++NGE KG+   SRG R+GDP+SPYLFLL +EGL +++ R + S +++G+ ++R  P +THLFFADDS++F +A
Subjt:  IMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKA

Query:  STFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
        +  +      +L  YE+ASGQ +N  K+ IF+S S  L  ++ +   LH+  +    +YLGL S   RSKS  F  + +R+
Subjt:  STFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

A0A2N9FKE9 Protein kinase domain-containing protein4.9e-6342.61Show/hide
Query:  IVEFHHRHDKPSN-GEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPD----------SFPVVFFQRNCKRSKHGYAALKLDMSKTY
        +VE+++     SN   +++ ++ VP  VT +MN+ L++ F+ EE+E+ IK   P+KAPGPD          +F  +    N K  + G  ALKLDMSK Y
Subjt:  IVEFHHRHDKPSN-GEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPD----------SFPVVFFQRNCKRSKHGYAALKLDMSKTY

Query:  DRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFF
        DRVEW YL  +M+++GFH KW+++++EC+S+ ++S+++NGE  G+I  SRG R+GDPLSPYLFLL +EGL S+I +   S  ++G+ + R  P +THLFF
Subjt:  DRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFF

Query:  ADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV
        ADDSL+F+KA+T        +L  YE+ASGQ VN  K+ IF+S S+ +  +  +  IL++  +     YLGL S   R+K++ F  I +RV
Subjt:  ADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDRV

A0A2N9GWJ4 Reverse transcriptase domain-containing protein8.7e-6043.37Show/hide
Query:  PSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPD----------SFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKI
        P+N  + +V+  VP  VT EMN+ L++ FK EE+E+ I    P+KAPGP+          +F  +    N K  + G  ALKLDMSK YD+VEW YL +I
Subjt:  PSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKAPGPD----------SFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKI

Query:  MQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKAS
        M+K GFH KW+ ++IEC+S  ++SI++NGE  G I+ SRG R+GDPLSPYLFLL +EGL S+I +   S  ++G+ + R  P +TH+FFADDSL+F+KA+
Subjt:  MQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKAS

Query:  TFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDR
        T        +L  YE+ASGQ VN  K+ IF+S ++    +  +   L++  +     YLGL S   R++ + F  I +R
Subjt:  TFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKSKDFQYILDR

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein1.4e-0621.86Show/hide
Query:  LPSNCRCFIVGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKA---PGPDSFPVVFFQRN----CKRSKHGYAALK
        LP +CR  ++ ++        P  G++  + +  P  + +    I+ +         + +  HP ++   PG   F  VF  R+     +R+    A L 
Subjt:  LPSNCRCFIVGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKGFHPTKA---PGPDSFPVVFFQRN----CKRSKHGYAALK

Query:  LDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAP
        LD  K +DRV+  YL   +Q   F  ++V  +    ++    + +N      +   RG R+G PLS  L+ L  E    ++ +     RL G+ +     
Subjt:  LDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAP

Query:  TMTHLFFADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLD--QKEFLTFILHMQALNSLGSYL
         +    +ADD +I +     +          Y  AS   +N+ KS      S+ +D     F       + +  LG YL
Subjt:  TMTHLFFADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLD--QKEFLTFILHMQALNSLGSYL

P92555 Uncharacterized mitochondrial protein AtMg012502.6e-1350Show/hide
Query:  ILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDS
        I+NG  +G +  SRG R+GDPLSPYLF+L +E LS +  R     RL GI+V+ ++P + HL FADD+
Subjt:  ILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDS

Q03274 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)1.3e-0421.77Show/hide
Query:  PSNGEISQVISAVPCKVTTEMNDILLQPFKRE-----EIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKIMQKLG
        P +G++    +  P  + + +  +L +   +      E+    KG+        +S  +  +  + +  +  Y  + LD+ K +D V  + + + +Q+LG
Subjt:  PSNGEISQVISAVPCKVTTEMNDILLQPFKRE-----EIEKVIKGFHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKIMQKLG

Query:  FHLKWVDMVIECVSTTTFSIILN-GEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFEF
              + +   +S +T +I +  G     I   RG ++GDPLSP+LF   +  L  ++  +  +  + G       P    L FADD L+ L+ +    
Subjt:  FHLKWVDMVIECVSTTTFSIILN-GEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFEF

Query:  GIFNGLLHDYEKASGQCVNFGKSI-IFYSPSVGL---DQKEFL---TFIL----HMQALNSLGSYLGLTSS
              + ++ +  G  +N  KS+ I  + S G+     K FL     +L     MQ    LG + GL+ +
Subjt:  GIFNGLLHDYEKASGQCVNFGKSI-IFYSPSVGL---DQKEFL---TFIL----HMQALNSLGSYLGLTSS

Q05118 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)7.0e-0625.5Show/hide
Query:  YAALKLDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQV
        Y  + LD+ K +D V    + + M+  G      D ++  ++    +I++ G     I    G ++GDPLSP LF +  + L      V+R N  +    
Subjt:  YAALKLDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQV

Query:  ARSAPTMTHLFFADDSLIF---------LKASTFEFGIFNGLLHDYEKAS--GQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFT
           A  +  L FADD L+            A+T  +    G+  + EK +        G+S+    PS  +D +    +I  +  +N+   YLGLT S T
Subjt:  ARSAPTMTHLFFADDSLIF---------LKASTFEFGIFNGLLHDYEKAS--GQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFT

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.9e-1450Show/hide
Query:  ILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDS
        I+NG  +G +  SRG R+GDPLSPYLF+L +E LS +  R     RL GI+V+ ++P + HL FADD+
Subjt:  ILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLSSIINRVSRSNRLKGIQVARSAPTMTHLFFADDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTCTCAACCTCTCTCTCCCTCTTCATCTCCGATCATTTTCTTACCGCCGACGACCAACCACCACTGGAAGCGTCGCTGCAGTCCAACCATCGTCATTGCAAACTC
GAACAAGCAGCACCCACGGATACCGCTAGCCCAGTTATTGCCCTCAAATTGTCGTTGTTTTATCGTGGGTATCGTTGAATTTCACCACCGCCATGACAAGCCGTCAAATG
GGGAAATTTCACAGGTCATTTCGGCAGTGCCATGTAAAGTGACTACGGAGATGAATGACATTCTTCTCCAACCTTTCAAGCGAGAAGAAATTGAAAAGGTTATTAAAGGG
TTTCATCCAACAAAGGCACCTGGTCCGGATAGTTTCCCTGTTGTTTTCTTTCAAAGAAATTGCAAGAGGTCAAAGCATGGTTATGCAGCTTTAAAGCTAGATATGAGCAA
GACATATGATAGAGTGGAGTGGACTTACTTAAGGAAAATTATGCAAAAGTTAGGGTTCCATCTGAAATGGGTTGATATGGTGATTGAATGTGTATCTACAACTACTTTTT
CTATCATTCTTAATGGGGAAGCTAAAGGACACATTGTCCAATCGCGAGGCTTCAGAAAAGGTGACCCACTTTCACCCTACTTATTTCTGCTTTGGTCTGAAGGTTTGTCA
TCCATAATCAATAGGGTCTCTCGGTCCAATCGGCTAAAAGGTATTCAAGTGGCCAGATCTGCTCCGACAATGACTCATCTTTTCTTTGCGGATGATAGCCTTATTTTTCT
TAAGGCTTCGACTTTTGAATTTGGTATTTTTAATGGTCTGCTCCATGACTATGAGAAGGCTTCGGGTCAATGTGTTAACTTTGGAAAGTCTATTATATTTTATTCTCCAT
CGGTTGGCTTGGATCAAAAGGAGTTCCTAACGTTTATTCTGCATATGCAAGCCCTAAATAGTTTAGGGAGTTATCTAGGATTGACTTCATCATTTACTAGAAGTAAGAGT
AAAGACTTCCAGTATATTTTGGATAGAGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCTCTCAACCTCTCTCTCCCTCTTCATCTCCGATCATTTTCTTACCGCCGACGACCAACCACCACTGGAAGCGTCGCTGCAGTCCAACCATCGTCATTGCAAACTC
GAACAAGCAGCACCCACGGATACCGCTAGCCCAGTTATTGCCCTCAAATTGTCGTTGTTTTATCGTGGGTATCGTTGAATTTCACCACCGCCATGACAAGCCGTCAAATG
GGGAAATTTCACAGGTCATTTCGGCAGTGCCATGTAAAGTGACTACGGAGATGAATGACATTCTTCTCCAACCTTTCAAGCGAGAAGAAATTGAAAAGGTTATTAAAGGG
TTTCATCCAACAAAGGCACCTGGTCCGGATAGTTTCCCTGTTGTTTTCTTTCAAAGAAATTGCAAGAGGTCAAAGCATGGTTATGCAGCTTTAAAGCTAGATATGAGCAA
GACATATGATAGAGTGGAGTGGACTTACTTAAGGAAAATTATGCAAAAGTTAGGGTTCCATCTGAAATGGGTTGATATGGTGATTGAATGTGTATCTACAACTACTTTTT
CTATCATTCTTAATGGGGAAGCTAAAGGACACATTGTCCAATCGCGAGGCTTCAGAAAAGGTGACCCACTTTCACCCTACTTATTTCTGCTTTGGTCTGAAGGTTTGTCA
TCCATAATCAATAGGGTCTCTCGGTCCAATCGGCTAAAAGGTATTCAAGTGGCCAGATCTGCTCCGACAATGACTCATCTTTTCTTTGCGGATGATAGCCTTATTTTTCT
TAAGGCTTCGACTTTTGAATTTGGTATTTTTAATGGTCTGCTCCATGACTATGAGAAGGCTTCGGGTCAATGTGTTAACTTTGGAAAGTCTATTATATTTTATTCTCCAT
CGGTTGGCTTGGATCAAAAGGAGTTCCTAACGTTTATTCTGCATATGCAAGCCCTAAATAGTTTAGGGAGTTATCTAGGATTGACTTCATCATTTACTAGAAGTAAGAGT
AAAGACTTCCAGTATATTTTGGATAGAGTCTAG
Protein sequenceShow/hide protein sequence
MVSQPLSPSSSPIIFLPPTTNHHWKRRCSPTIVIANSNKQHPRIPLAQLLPSNCRCFIVGIVEFHHRHDKPSNGEISQVISAVPCKVTTEMNDILLQPFKREEIEKVIKG
FHPTKAPGPDSFPVVFFQRNCKRSKHGYAALKLDMSKTYDRVEWTYLRKIMQKLGFHLKWVDMVIECVSTTTFSIILNGEAKGHIVQSRGFRKGDPLSPYLFLLWSEGLS
SIINRVSRSNRLKGIQVARSAPTMTHLFFADDSLIFLKASTFEFGIFNGLLHDYEKASGQCVNFGKSIIFYSPSVGLDQKEFLTFILHMQALNSLGSYLGLTSSFTRSKS
KDFQYILDRV