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Lag0007642 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007642
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr9:2325477..2326055
RNA-Seq ExpressionLag0007642
SyntenyLag0007642
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.7e-0451.06Show/hide
Query:  WIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAPQYGEWLR
        W P+RYE+LPD C  CG IGH  R+C    K    ++S  QYG+WLR
Subjt:  WIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAPQYGEWLR

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]4.0e-0858.18Show/hide
Query:  MFGSWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSA-PQYGEWLRYGG
        M G WIPI+YERLPD C FCGVIGH S DC   Y   +  S A  +YG WLR+ G
Subjt:  MFGSWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSA-PQYGEWLRYGG

XP_023880219.1 uncharacterized protein LOC111992570 [Quercus suber]1.4e-0545.16Show/hide
Query:  WIPIRYERLPDNCSFCGVIGHISRDC-GYFYKFTRASSSAPQYGEWLRYGGRGEMIARSQAK
        W+  +YERLP  C FCG +GH  R C GYF    R  S   QYGEWLR  G    ++  + K
Subjt:  WIPIRYERLPDNCSFCGVIGHISRDC-GYFYKFTRASSSAPQYGEWLRYGGRGEMIARSQAK

XP_023918419.1 uncharacterized protein LOC112029969 [Quercus suber]2.1e-0448.15Show/hide
Query:  SWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAP-QYGEWLR-YGGR
        SWI  +YERLP  C FCG++GH  R C   +  TR+      QYG+WL+  GGR
Subjt:  SWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAP-QYGEWLR-YGGR

XP_035545013.1 uncharacterized protein LOC108979776 [Juglans regia]2.7e-0431.63Show/hide
Query:  WIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAPQYGEWLRYGGRGEMIARSQAKDLRLESIVPLSPVNPLLSQSSVAMDTSTSNDSPLLMP
        W+   YE+LPD C  C  IGH  RDC     F    +  P YG+WLR GGRG    +    + R      ++PV+     + V ++   +  +P + P
Subjt:  WIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAPQYGEWLRYGGRGEMIARSQAKDLRLESIVPLSPVNPLLSQSSVAMDTSTSNDSPLLMP

TrEMBL top hitse value%identityAlignment
A0A2N9GB96 Uncharacterized protein2.2e-0448.98Show/hide
Query:  SWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASS-SAPQYGEWLR
        SW+  RYERLP+ C  CG + H  +DC    +   A S  APQYG WLR
Subjt:  SWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASS-SAPQYGEWLR

A0A2N9H0J9 Uncharacterized protein2.2e-0448.98Show/hide
Query:  SWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASS-SAPQYGEWLR
        SW+  RYERLP+ C  CG + H  +DC    +   A S  APQYG WLR
Subjt:  SWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASS-SAPQYGEWLR

A0A6J1D765 uncharacterized protein LOC1110179021.3e-0451.06Show/hide
Query:  WIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAPQYGEWLR
        W P+RYE+LPD C  CG IGH  R+C    K    ++S  QYG+WLR
Subjt:  WIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAPQYGEWLR

A0A6J1DU55 uncharacterized protein LOC1110231352.0e-0858.18Show/hide
Query:  MFGSWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSA-PQYGEWLRYGG
        M G WIPI+YERLPD C FCGVIGH S DC   Y   +  S A  +YG WLR+ G
Subjt:  MFGSWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSA-PQYGEWLRYGG

A0A6P9E2G0 uncharacterized protein LOC1183446881.3e-0446.94Show/hide
Query:  SWIPIRYERLPDNCSFCGVIGHISRDCG-YFYKFTRASSSAPQYGEWLR
        SWIP +YERLP  C +CG++ H    C  +F   +  + S PQYG WLR
Subjt:  SWIPIRYERLPDNCSFCGVIGHISRDCG-YFYKFTRASSSAPQYGEWLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGTAGTTGGATCCCGATTCGGTATGAACGCTTACCGGATAACTGTTCGTTTTGTGGCGTTATTGGCCATATATCGAGGGATTGTGGGTACTTTTATAAGTTTAC
TCGAGCAAGTAGTTCGGCCCCTCAGTATGGCGAATGGCTACGATATGGAGGAAGAGGAGAAATGATTGCACGATCGCAGGCGAAGGACCTCAGGCTTGAATCCATTGTTC
CTCTTTCACCGGTTAATCCACTTTTATCTCAATCTTCGGTGGCTATGGATACCAGCACCTCAAATGACTCACCTCTTCTCATGCCCAGAGGATTTAGCCGGTCAGGGTGG
TCTTTGCCGAAGAGAAGGAAGAGTTTTTTCGGATACCAACCAACCAACATTCTATCGTCTTTCTGGTGGCCCGTTTTTTCTCCCACTAGACGAAAAGATCTCAGTCTGGT
GTCCAGCATGCAACAATGGAAGCCTAAGCTAACCGGAGTCGTGATCGGCGCATCGCGACCACTGCCTAGTCTGGTGGGTGAAGGAAATGTTAATGGAGCAATTAATGCGG
TTGTCGTTGAAGAGCTCGAGCAGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGTAGTTGGATCCCGATTCGGTATGAACGCTTACCGGATAACTGTTCGTTTTGTGGCGTTATTGGCCATATATCGAGGGATTGTGGGTACTTTTATAAGTTTAC
TCGAGCAAGTAGTTCGGCCCCTCAGTATGGCGAATGGCTACGATATGGAGGAAGAGGAGAAATGATTGCACGATCGCAGGCGAAGGACCTCAGGCTTGAATCCATTGTTC
CTCTTTCACCGGTTAATCCACTTTTATCTCAATCTTCGGTGGCTATGGATACCAGCACCTCAAATGACTCACCTCTTCTCATGCCCAGAGGATTTAGCCGGTCAGGGTGG
TCTTTGCCGAAGAGAAGGAAGAGTTTTTTCGGATACCAACCAACCAACATTCTATCGTCTTTCTGGTGGCCCGTTTTTTCTCCCACTAGACGAAAAGATCTCAGTCTGGT
GTCCAGCATGCAACAATGGAAGCCTAAGCTAACCGGAGTCGTGATCGGCGCATCGCGACCACTGCCTAGTCTGGTGGGTGAAGGAAATGTTAATGGAGCAATTAATGCGG
TTGTCGTTGAAGAGCTCGAGCAGGAATAG
Protein sequenceShow/hide protein sequence
MFGSWIPIRYERLPDNCSFCGVIGHISRDCGYFYKFTRASSSAPQYGEWLRYGGRGEMIARSQAKDLRLESIVPLSPVNPLLSQSSVAMDTSTSNDSPLLMPRGFSRSGW
SLPKRRKSFFGYQPTNILSSFWWPVFSPTRRKDLSLVSSMQQWKPKLTGVVIGASRPLPSLVGEGNVNGAINAVVVEELEQE