; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007647 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007647
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr9:2354793..2355689
RNA-Seq ExpressionLag0007647
SyntenyLag0007647
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.3e-5048.78Show/hide
Query:  MKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHINLLTVKQ
        MK +VP KFK+P  K YDG  DPI HL+ Y  W D + + +AI CR F FTL GSTR WF++LKR+SIS FK+LARAF+ QF G     +P   LLT+KQ
Subjt:  MKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHINLLTVKQ

Query:  QPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEG
        +  ESL+DY+  FN E LQVEG ++   L+   +G++DE+L+ S GK    T++E  SRAQ YMS  EL+ SK+  +         Y     KR+R  E 
Subjt:  QPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEG

Query:  GRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRN
          G     R D+G+GR  Q   P  KFEKYTPT VP EQVLMEI++
Subjt:  GRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRN

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]2.6e-4647.03Show/hide
Query:  MKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHINLLTVKQ
        MK +   KFK+P    YDG  DPI HL+ Y+ W D +D+ +AI CR F FTL GS R+WF +LKR SIS FK+LA AF+ QF+G R   KP   LLT+KQ
Subjt:  MKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHINLLTVKQ

Query:  QPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLK-SKKSEREYKRFSSSNYDSKKDKRQRTDE
        +  ESL++Y+  FN+E LQVEG ++   L+A  +G++DERL+ S GK  P T+ E +SRAQKYMSA EL+  S+  ERE      +NY +K+++R     
Subjt:  QPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLK-SKKSEREYKRFSSSNYDSKKDKRQRTDE

Query:  GGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVV
          R R+   R D+G GR  Q  P   KFEK   +++
Subjt:  GGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVV

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]6.4e-6149.1Show/hide
Query:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG
        +EEL+DQ D PFTEE+M+ +VP KFK+PT K +D   DP+ HL+ Y+ WMD + V +A+ CR F  TL GS R WF +LKR SIS FK LARAF+ QF+G
Subjt:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG

Query:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS
         R   +P   LLT+KQ+  ESLRDY+  FN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+YMSA E   SK+          
Subjt:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS

Query:  SNYDSKKDKRQRTDEGGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRR
           D K+   +R   G + +  R      R R  Q  PP  KFEKYTPT VP EQVLMEI++  LLK+P RMK+S+ +R
Subjt:  SNYDSKKDKRQRTDEGGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRR

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]2.0e-4648.44Show/hide
Query:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG
        +EEL+ Q D PFTEE+M+ +VP KFK+PT K +DG  +P+ HL+ Y+ WMD + V DAI CR F  TL GS R WF +LKR SIS FK LARAF+ QF+G
Subjt:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG

Query:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS
         R   +P   LLT+KQ+  ESL DY+  FN+E LQ+EG ++  +L+A  +G+ DE L  S  K  P T++E +SRAQ+YMSA E   SK+ E + KR   
Subjt:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS

Query:  SNYDSKKDKRQRTDEGGR-GRADRG
           D K+++     +G R  + DRG
Subjt:  SNYDSKKDKRQRTDEGGR-GRADRG

XP_024047974.1 uncharacterized protein LOC112101548 [Citrus clementina]2.9e-4540.43Show/hide
Query:  EELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGA
        ++++ + +PPFT+E+M+A  P  F++P+ + YDG+K P++H+  Y+S M+   V  AI CRAF  TL+ + R WF  L+  SIS F +L R F   F  A
Subjt:  EELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGA

Query:  RELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSS
        R+  KP   LLTVKQ  GESLR+YI  +N E  QV+GY +G  L  +  GL+  RL  S+ K+ P TY+E +SRA+KY +AEE  +SKK     K  SS 
Subjt:  RELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSS

Query:  NYDSKKDKRQ----RTDEGGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRR
        N  +K+D+R     R D+    R D+ R  +     +  + P  +F  YT    P+E +LM+++N+ L K P  +KS   RR
Subjt:  NYDSKKDKRQ----RTDEGGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRR

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.1e-5048.78Show/hide
Query:  MKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHINLLTVKQ
        MK +VP KFK+P  K YDG  DPI HL+ Y  W D + + +AI CR F FTL GSTR WF++LKR+SIS FK+LARAF+ QF G     +P   LLT+KQ
Subjt:  MKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHINLLTVKQ

Query:  QPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEG
        +  ESL+DY+  FN E LQVEG ++   L+   +G++DE+L+ S GK    T++E  SRAQ YMS  EL+ SK+  +         Y     KR+R  E 
Subjt:  QPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEG

Query:  GRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRN
          G     R D+G+GR  Q   P  KFEKYTPT VP EQVLMEI++
Subjt:  GRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRN

A0A6J1DWY0 uncharacterized protein LOC1110252933.1e-6149.1Show/hide
Query:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG
        +EEL+DQ D PFTEE+M+ +VP KFK+PT K +D   DP+ HL+ Y+ WMD + V +A+ CR F  TL GS R WF +LKR SIS FK LARAF+ QF+G
Subjt:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG

Query:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS
         R   +P   LLT+KQ+  ESLRDY+  FN+E LQVEG ++  +L+A  +G+ DE L  S GK  P T++E +SRAQ+YMSA E   SK+          
Subjt:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS

Query:  SNYDSKKDKRQRTDEGGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRR
           D K+   +R   G + +  R      R R  Q  PP  KFEKYTPT VP EQVLMEI++  LLK+P RMK+S+ +R
Subjt:  SNYDSKKDKRQRTDEGGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRR

A0A6J1DZ49 uncharacterized protein LOC1110248511.3e-4647.03Show/hide
Query:  MKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHINLLTVKQ
        MK +   KFK+P    YDG  DPI HL+ Y+ W D +D+ +AI CR F FTL GS R+WF +LKR SIS FK+LA AF+ QF+G R   KP   LLT+KQ
Subjt:  MKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHINLLTVKQ

Query:  QPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLK-SKKSEREYKRFSSSNYDSKKDKRQRTDE
        +  ESL++Y+  FN+E LQVEG ++   L+A  +G++DERL+ S GK  P T+ E +SRAQKYMSA EL+  S+  ERE      +NY +K+++R     
Subjt:  QPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLK-SKKSEREYKRFSSSNYDSKKDKRQRTDE

Query:  GGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVV
          R R+   R D+G GR  Q  P   KFEK   +++
Subjt:  GGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVV

A0A6J1E1E7 uncharacterized protein LOC1110255489.7e-4748.44Show/hide
Query:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG
        +EEL+ Q D PFTEE+M+ +VP KFK+PT K +DG  +P+ HL+ Y+ WMD + V DAI CR F  TL GS R WF +LKR SIS FK LARAF+ QF+G
Subjt:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG

Query:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS
         R   +P   LLT+KQ+  ESL DY+  FN+E LQ+EG ++  +L+A  +G+ DE L  S  K  P T++E +SRAQ+YMSA E   SK+ E + KR   
Subjt:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS

Query:  SNYDSKKDKRQRTDEGGR-GRADRG
           D K+++     +G R  + DRG
Subjt:  SNYDSKKDKRQRTDEGGR-GRADRG

A0A7N2LNH8 Ribonuclease H2.9e-4339.43Show/hide
Query:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG
        +++L+++ D PFT  V    +P KF++P+  SYDG KDP+ HL T+K+ M    V DAI CRAF  TL G+ R WF R+   SIS FK+L+  F   F+G
Subjt:  MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMG

Query:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS
            +K    L+ +KQ+  E+LR YI+ FN EAL ++   +   + A T GL+  + L S+ K+ P+T +E + RA KYM+AE+ L S++ +R  KR   
Subjt:  ARELRKPHINLLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSS

Query:  SNYDSKKDKRQRTDEGGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRR
           DS++D+ ++    G  R DR        RP    P  G+F  +TP   P +QVLM+I++ G L FPG++KS   +R
Subjt:  SNYDSKKDKRQRTDEGGRGRADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAGTCGTATGATGGTAAGAA
AGACCCAATCCAACATCTAAATACCTACAAAAGCTGGATGGACTTCCACGACGTTTTAGATGCAATCAACTGTCGTGCCTTCTTTTTCACCCTAGCAGGATCAACCAGGC
ACTGGTTTGAGAGGTTGAAAAGGAGATCCATCAGTTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAATTCATGGGAGCCAGAGAACTGCGCAAGCCTCACATAAAC
CTCTTAACAGTCAAACAACAGCCAGGTGAGAGTTTACGTGATTACATAACGTGTTTTAACGATGAAGCATTGCAGGTTGAGGGATACAGCGAGGGAGCAACCCTAGTAGC
CATAACAGCCGGACTGGAAGACGAAAGACTGCTCAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAGG
AGTTACTTAAGTCAAAGAAGTCGGAACGAGAGTACAAGAGATTTTCTTCATCTAACTACGATAGTAAAAAGGACAAAAGGCAGCGGACCGACGAGGGAGGCCGGGGCCGA
GCAGACCGAGGTCGAGTAGACAATGGCCGAGGCCGACCAGACCAAGGAGCACCTCCTTTCGGTAAGTTTGAAAAATACACCCCAACTGTTGTTCCGCAGGAGCAAGTACT
GATGGAGATTCGAAATACGGGCCTCCTGAAATTCCCAGGGAGGATGAAGTCGAGTGCCGATAGAAGAGTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAA
TAATAAAGTGTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAGTCGTATGATGGTAAGAA
AGACCCAATCCAACATCTAAATACCTACAAAAGCTGGATGGACTTCCACGACGTTTTAGATGCAATCAACTGTCGTGCCTTCTTTTTCACCCTAGCAGGATCAACCAGGC
ACTGGTTTGAGAGGTTGAAAAGGAGATCCATCAGTTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAATTCATGGGAGCCAGAGAACTGCGCAAGCCTCACATAAAC
CTCTTAACAGTCAAACAACAGCCAGGTGAGAGTTTACGTGATTACATAACGTGTTTTAACGATGAAGCATTGCAGGTTGAGGGATACAGCGAGGGAGCAACCCTAGTAGC
CATAACAGCCGGACTGGAAGACGAAAGACTGCTCAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAGTATATGAGCGCAGAGG
AGTTACTTAAGTCAAAGAAGTCGGAACGAGAGTACAAGAGATTTTCTTCATCTAACTACGATAGTAAAAAGGACAAAAGGCAGCGGACCGACGAGGGAGGCCGGGGCCGA
GCAGACCGAGGTCGAGTAGACAATGGCCGAGGCCGACCAGACCAAGGAGCACCTCCTTTCGGTAAGTTTGAAAAATACACCCCAACTGTTGTTCCGCAGGAGCAAGTACT
GATGGAGATTCGAAATACGGGCCTCCTGAAATTCCCAGGGAGGATGAAGTCGAGTGCCGATAGAAGAGTGATGTGGACTTTTCCTAACCGCAAGCGCACGGGTCAAGTAA
TAATAAAGTGTTCGTAA
Protein sequenceShow/hide protein sequence
MEELIDQVDPPFTEEVMKAEVPQKFKVPTFKSYDGKKDPIQHLNTYKSWMDFHDVLDAINCRAFFFTLAGSTRHWFERLKRRSISCFKDLARAFLAQFMGARELRKPHIN
LLTVKQQPGESLRDYITCFNDEALQVEGYSEGATLVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLKSKKSEREYKRFSSSNYDSKKDKRQRTDEGGRGR
ADRGRVDNGRGRPDQGAPPFGKFEKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSSADRRVMWTFPNRKRTGQVIIKCS