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Lag0007656 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007656
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionMediator of RNA polymerase II transcription subunit 33A-like
Genome locationchr9:2548849..2553958
RNA-Seq ExpressionLag0007656
SyntenyLag0007656
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458546.1 PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A-like [Cucumis melo]1.3e-0457.14Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   +   EHTVHYITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
XP_011657206.1 mediator of RNA polymerase II transcription subunit 33A isoform X1 [Cucumis sativus]1.3e-0457.14Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   +   EHTVHYITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
XP_038876266.1 mediator of RNA polymerase II transcription subunit 33A-like isoform X1 [Benincasa hispida]2.7e-0559.18Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   + F EHTVHYITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
XP_038876267.1 mediator of RNA polymerase II transcription subunit 33A-like isoform X2 [Benincasa hispida]2.7e-0559.18Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   + F EHTVHYITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
XP_038876268.1 mediator of RNA polymerase II transcription subunit 33A-like isoform X3 [Benincasa hispida]2.7e-0559.18Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   + F EHTVHYITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
TrEMBL top hitse value%identityAlignment
A0A0A0KHK6 Uncharacterized protein6.4e-0557.14Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   +   EHTVHYITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
A0A1S3C9B9 LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 33A-like6.4e-0557.14Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   +   EHTVHYITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
A0A5A7SQH3 Mediator of RNA polymerase II transcription subunit 33A-like6.4e-0557.14Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   +   EHTVHYITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
A0A6J1C952 mediator of RNA polymerase II transcription subunit 33A1.9e-0455.1Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   +   EHTVH+ITRLLSPPVPTDYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
A0A6J1KE52 mediator of RNA polymerase II transcription subunit 33A-like isoform X23.2e-0455.1Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  + C  ++   +   EHTVHYITRLLSPPVP DYSGCES
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G23590.1 REF4-related 11.1e-0446.94Show/hide
Query:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES
        GS      A  V C  ++   +   EHTV Y+TRLLSPPVP DYS  E+
Subjt:  GSSSTSEEALLVCCTLAV---YEFLEHTVHYITRLLSPPVPTDYSGCES

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCACGGCTGGAACTCAAAGTCTCAAACCCTCGTATTCTTCACCTTATAACCCTCGACGGCGACCAAATCTTCCACGACAGCTTCGACGGTGACCAGATCTCACC
GACGACGACCAGACCTTTGACAGTAGCTTCGACGGCGATGGACAGCGACATTTATGAGCTTCCTTCCCTCACAATCGACGACTGGATCAGAAGCGGAAGAATCAGAAGCG
GAAGCAGAACCAGGAGGGTCATTAAGGACTGGCGTGTTCTTGCCCCACCATGTGAACTACAACCGTCCAGCACCATCTCCTCAGCCACCACAGCCACTGCAGAAAAAGGA
TTTATTTTAGTTTTAGATACTATCATGTATTTCACAGGTGATGGAGAGCGACCTATAGCATCACCTATAAGGTTAACTATGTGCAGATCAGCTATAGAAGCTGCAAAGTT
GACTTCTAGGAGCGAATGCAAGGGAGATGACAGAATTCATGTTGAAGCTGCTAGTCAATTAGTGGTGATTAGTTTCTGCTTTGTTCCCGATTACATTTGGAACGGAAGTT
CTAGCACAAGTGAGGAGGCTTTGCTAGTGTGCTGCACACTAGCAGTCTATGAATTTCTTGAACATACTGTCCATTATATCACTAGATTACTTTCTCCTCCAGTTCCCACA
GATTACTCTGGATGTGAAAGTCTTGAGAATTTCGTCGCAAGACCTGAAAAAAAAAACCCGCGTTTTCCCCCTTATTTTTCATTTCATTTCTCTTCACCCATTTCATTCCC
TTCTCTTCTGTCATTCCGCCATTTCCTTTCCTCTTATTTCTCTTCGGCCATTCCTCCTACTTCATCTCCAACGAGTCGTTCACGTGGCGTTAGGCGTTCTGGCGAGCAAC
CATTGTTTTTCTTGCGGCTGGTGCGACTAGGAAGTGGCGGTAAGCTTCATTTTCCTGCGTTTTTAGCATTTTCAGGCGTGGGTTCCTTTCCCCTCTTATTTCGGACAACT
AACAAGCTTCTAGTAGCCTCGATTCCTTCGATTTCCAGCCATTCACAAAGGGTCTTCGATTCTATGTGGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCACGGCTGGAACTCAAAGTCTCAAACCCTCGTATTCTTCACCTTATAACCCTCGACGGCGACCAAATCTTCCACGACAGCTTCGACGGTGACCAGATCTCACC
GACGACGACCAGACCTTTGACAGTAGCTTCGACGGCGATGGACAGCGACATTTATGAGCTTCCTTCCCTCACAATCGACGACTGGATCAGAAGCGGAAGAATCAGAAGCG
GAAGCAGAACCAGGAGGGTCATTAAGGACTGGCGTGTTCTTGCCCCACCATGTGAACTACAACCGTCCAGCACCATCTCCTCAGCCACCACAGCCACTGCAGAAAAAGGA
TTTATTTTAGTTTTAGATACTATCATGTATTTCACAGGTGATGGAGAGCGACCTATAGCATCACCTATAAGGTTAACTATGTGCAGATCAGCTATAGAAGCTGCAAAGTT
GACTTCTAGGAGCGAATGCAAGGGAGATGACAGAATTCATGTTGAAGCTGCTAGTCAATTAGTGGTGATTAGTTTCTGCTTTGTTCCCGATTACATTTGGAACGGAAGTT
CTAGCACAAGTGAGGAGGCTTTGCTAGTGTGCTGCACACTAGCAGTCTATGAATTTCTTGAACATACTGTCCATTATATCACTAGATTACTTTCTCCTCCAGTTCCCACA
GATTACTCTGGATGTGAAAGTCTTGAGAATTTCGTCGCAAGACCTGAAAAAAAAAACCCGCGTTTTCCCCCTTATTTTTCATTTCATTTCTCTTCACCCATTTCATTCCC
TTCTCTTCTGTCATTCCGCCATTTCCTTTCCTCTTATTTCTCTTCGGCCATTCCTCCTACTTCATCTCCAACGAGTCGTTCACGTGGCGTTAGGCGTTCTGGCGAGCAAC
CATTGTTTTTCTTGCGGCTGGTGCGACTAGGAAGTGGCGGTAAGCTTCATTTTCCTGCGTTTTTAGCATTTTCAGGCGTGGGTTCCTTTCCCCTCTTATTTCGGACAACT
AACAAGCTTCTAGTAGCCTCGATTCCTTCGATTTCCAGCCATTCACAAAGGGTCTTCGATTCTATGTGGTTTTAG
Protein sequenceShow/hide protein sequence
MVSRLELKVSNPRILHLITLDGDQIFHDSFDGDQISPTTTRPLTVASTAMDSDIYELPSLTIDDWIRSGRIRSGSRTRRVIKDWRVLAPPCELQPSSTISSATTATAEKG
FILVLDTIMYFTGDGERPIASPIRLTMCRSAIEAAKLTSRSECKGDDRIHVEAASQLVVISFCFVPDYIWNGSSSTSEEALLVCCTLAVYEFLEHTVHYITRLLSPPVPT
DYSGCESLENFVARPEKKNPRFPPYFSFHFSSPISFPSLLSFRHFLSSYFSSAIPPTSSPTSRSRGVRRSGEQPLFFLRLVRLGSGGKLHFPAFLAFSGVGSFPLLFRTT
NKLLVASIPSISSHSQRVFDSMWF