CuGenDBv2

Gene ID	Lag0007676
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RNase H domain-containing protein
Genome location	chr9:2989139..2989735
RNA-Seq Expression	Lag0007676
Synteny	Lag0007676
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_015384077.1 uncharacterized protein LOC107176301 [Citrus sinensis]

5.1e-14

35.21

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Query:  QWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKVE
        +WKPP  N +K+N DA    K  + GLG  I DS  + +  G  +   K ++ Y E EAI  GL+       +  R    +L++ESD  +VV +VN+   
Subjt:  QWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKVE

Query:  DQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAA
        ++  L +I+EEI + K +   V  +  PR CN  AH LA+ A
Subjt:  DQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

6.2e-20

39.73

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Query:  AQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKV
        AQWKPP  N WKLN +A W      GG+GW + D  G +I+  C  I  +  I YLEV AI EGLRA      I    C+P + +ESDS + + +++ + 
Subjt:  AQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKV

Query:  EDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFN
        +DQ E+ +++EEI  +     IV      R  N +AH LAR A  N
Subjt:  EDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFN

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]

8.7e-14

40.37

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Query:  SSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVN
        ++ A+WKPP  N WKLN DA W       G+GW + D  G +I+ GC  I  +  I YLEV AI EGLRA      I    C+P + +ESDS + + +++
Subjt:  SSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVN

Query:  HKVEDQLEL
          V+ +L+L
Subjt:  HKVEDQLEL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]

1.4e-16

36.67

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Query:  ETHSSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVG
        +T ++  +W+PP  + W LNADA+W      GG+GW I   +G ++  G   +     +K LE  AI+EGLR     G +        L +E+DSA+V  
Subjt:  ETHSSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVG

Query:  VVNHKVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAAS
        ++N K ED  +  ++VEEI +L+ S  I+ F+K  R  N  AH LA+ AS
Subjt:  VVNHKVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAAS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]

9.6e-21

39.86

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Query:  AQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGR--FGDIEGRRCKPSLVVESDSAKVVGVVNH
        A+WKPP  N WKLN DA W      GG+GW + D  G +I+  C  I  +  I YLEV AI EGLRA  +     I+   C+P + +ESDS + + +++ 
Subjt:  AQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGR--FGDIEGRRCKPSLVVESDSAKVVGVVNH

Query:  KVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFN
        + +DQ E+ +++EEI  +     IV      R  N +AHDLAR A  N
Subjt:  KVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFN

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP26 uncharacterized protein LOC111013412

3.0e-20

39.73

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Query:  AQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKV
        AQWKPP  N WKLN +A W      GG+GW + D  G +I+  C  I  +  I YLEV AI EGLRA      I    C+P + +ESDS + + +++ + 
Subjt:  AQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKV

Query:  EDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFN
        +DQ E+ +++EEI  +     IV      R  N +AH LAR A  N
Subjt:  EDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFN

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X1

4.2e-14

40.37

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Query:  SSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVN
        ++ A+WKPP  N WKLN DA W       G+GW + D  G +I+ GC  I  +  I YLEV AI EGLRA      I    C+P + +ESDS + + +++
Subjt:  SSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVN

Query:  HKVEDQLEL
          V+ +L+L
Subjt:  HKVEDQLEL

A0A6J1DNV9 uncharacterized protein LOC111022403

6.9e-17

36.67

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Query:  ETHSSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVG
        +T ++  +W+PP  + W LNADA+W      GG+GW I   +G ++  G   +     +K LE  AI+EGLR     G +        L +E+DSA+V  
Subjt:  ETHSSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVG

Query:  VVNHKVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAAS
        ++N K ED  +  ++VEEI +L+ S  I+ F+K  R  N  AH LA+ AS
Subjt:  VVNHKVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAAS

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X2

4.2e-14

40.37

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Query:  SSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVN
        ++ A+WKPP  N WKLN DA W       G+GW + D  G +I+ GC  I  +  I YLEV AI EGLRA      I    C+P + +ESDS + + +++
Subjt:  SSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVN

Query:  HKVEDQLEL
          V+ +L+L
Subjt:  HKVEDQLEL

A0A6J1DSV1 uncharacterized protein LOC111023608

4.6e-21

39.86

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Query:  AQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGR--FGDIEGRRCKPSLVVESDSAKVVGVVNH
        A+WKPP  N WKLN DA W      GG+GW + D  G +I+  C  I  +  I YLEV AI EGLRA  +     I+   C+P + +ESDS + + +++ 
Subjt:  AQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGR--FGDIEGRRCKPSLVVESDSAKVVGVVNH

Query:  KVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFN
        + +DQ E+ +++EEI  +     IV      R  N +AHDLAR A  N
Subjt:  KVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G52990.1 thioredoxin family protein

1.6e-05

26.28

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Query:  PNC-WKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKVEDQLEL
        P+C  K N DA+  + + + GLGW I +S G+++  G  K   +   +  E  A++  ++A   FG          ++ E D++ V  ++N K  D   L
Subjt:  PNC-WKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKVEDQLEL

Query:  NFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAA
           ++ I S   S     F    R  N  A  L + A
Subjt:  NFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAA

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

7.6e-08

25.34

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Query:  SSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVN
        S + +W PP  +  K N DA+  ++  + GLGW + +S G++I  G  K   +   +  E   ++  ++A   FG          ++ E D+  +  ++N
Subjt:  SSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVN

Query:  HKVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAA
         K  +   L   ++ I S   S   + FS   R  N  A  LA+ A
Subjt:  HKVEDQLELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAA

Sequences

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CDS sequence

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ATGGAGACCCATTCAAGTCACGCGCAGTGGAAGCCTCCGGATCCCAATTGCTGGAAGCTAAACGCCGACGCCACCTGGTTCAAGAAAGAAGGAATAGGCGGTTTGGGTTG
GGCCATTCATGACTCTAACGGGTCTTTAATCAGAGTTGGATGCACGAAAATCACAAGGAAGTGGGCAATTAAGTACCTGGAAGTCGAGGCAATTGTTGAAGGTTTGAGAG
CGTACGGTAGGTTTGGAGACATCGAAGGAAGAAGATGTAAACCATCGCTGGTTGTTGAATCCGACTCCGCCAAAGTTGTAGGAGTCGTTAATCACAAAGTCGAGGATCAA
TTGGAACTCAACTTCATTGTCGAGGAGATCGATTCTCTCAAGCTTTCGAATTTGATTGTATATTTCTCCAAATGCCCGAGGAATTGTAACACCTTGGCACACGATCTTGC
TCGAGCTGCATCTTTCAATGGTGATTTAACTTTTTTTGGTCGCTCACTTCTTCTCTGTGAGGAAGGCGAAGCGTTTTGGAGGGAAATTTCTTTCCCCAGCTGGTTTTCAT
CTGTTCTACTCGATGGGTTTGGTGTAACAAACTCTCATTTTAGTTAA

mRNA sequence

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Protein sequence

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METHSSHAQWKPPDPNCWKLNADATWFKKEGIGGLGWAIHDSNGSLIRVGCTKITRKWAIKYLEVEAIVEGLRAYGRFGDIEGRRCKPSLVVESDSAKVVGVVNHKVEDQ
LELNFIVEEIDSLKLSNLIVYFSKCPRNCNTLAHDLARAASFNGDLTFFGRSLLLCEEGEAFWREISFPSWFSSVLLDGFGVTNSHFS

Lag0007676 (gene) of Sponge gourd (AG-4) v1 genome