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Lag0007690 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007690
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S ribosomal protein L23, chloroplastic
Genome locationchr9:3149683..3151028
RNA-Seq ExpressionLag0007690
SyntenyLag0007690
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAG7865606.1 unnamed protein product, partial [Brassica rapa]5.4e-1041.67Show/hide
Query:  NSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLV
        NSL  H FF  D TKK DPKA+ALK AKAVKS Q +++K ++                                                     + +LV
Subjt:  NSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLV

Query:  FIVDIRADKKKIKDAMKKMHDIETKKVTTLIR
        FIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Subjt:  FIVDIRADKKKIKDAMKKMHDIETKKVTTLIR

CAG7905614.1 unnamed protein product, partial [Brassica rapa]1.7e-1153.19Show/hide
Query:  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE------------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR
        D TKKADPKA+ALK AKAVKS Q +++K ++                          + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Subjt:  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE------------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR

KAG7030529.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma]6.4e-1154.35Show/hide
Query:  ADSTKKADPKAEALKTAKAVKSV---QHLRRKRRE------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR
        A++TKKADPKA+ALKTAKAVK +     L R + +                    + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Subjt:  ADSTKKADPKAEALKTAKAVKSV---QHLRRKRRE------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR

KZV20942.1 hypothetical protein F511_40125 [Dorcoceras hygrometricum]7.6e-1253.26Show/hide
Query:  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR
        ADSTKK+DPKA+ALKT+KAVK     ++K ++                       + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Subjt:  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR

VDD57439.1 unnamed protein product, partial [Brassica oleracea]1.2e-0941.6Show/hide
Query:  FFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRA
        FF  D TKKADPKA+ALK AKAVKS Q +++K ++                                                     + +LVFIVDIRA
Subjt:  FFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRA

Query:  DKKKIKDAMKKMHDIETKKVTTLIR
        DKKKIKDA+KKM+DI+TKKV TLIR
Subjt:  DKKKIKDAMKKMHDIETKKVTTLIR

TrEMBL top hitse value%identityAlignment
A0A1S3CJE6 50S ribosomal protein L23, chloroplastic1.0e-0942.62Show/hide
Query:  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKK
        ADSTKKADPKA+ALKTAKAVKS    ++K ++                                                     + +LVFIVDIRADKK
Subjt:  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKK

Query:  KIKDAMKKMHDIETKKVTTLIR
        KIKDA+KKM+DI+TKKV TLIR
Subjt:  KIKDAMKKMHDIETKKVTTLIR

A0A2Z7AP73 Uncharacterized protein3.7e-1253.26Show/hide
Query:  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR
        ADSTKK+DPKA+ALKT+KAVK     ++K ++                       + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Subjt:  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------SGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR

A0A3P6GUY6 3-oxoacyl-[acyl-carrier-protein] reductase (Fragment)5.8e-1041.6Show/hide
Query:  FFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRA
        FF  D TKKADPKA+ALK AKAVKS Q +++K ++                                                     + +LVFIVDIRA
Subjt:  FFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRA

Query:  DKKKIKDAMKKMHDIETKKVTTLIR
        DKKKIKDA+KKM+DI+TKKV TLIR
Subjt:  DKKKIKDAMKKMHDIETKKVTTLIR

A0A5D3C5W3 50S ribosomal protein L23, chloroplastic1.0e-0942.62Show/hide
Query:  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKK
        ADSTKKADPKA+ALKTAKAVKS    ++K ++                                                     + +LVFIVDIRADKK
Subjt:  ADSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKK

Query:  KIKDAMKKMHDIETKKVTTLIR
        KIKDA+KKM+DI+TKKV TLIR
Subjt:  KIKDAMKKMHDIETKKVTTLIR

R0HEE5 Ribosomal_L23eN domain-containing protein1.0e-0937.11Show/hide
Query:  AVRLGLGFTWDAISLI---------HSNSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRK----------------------------------
        AV     F W  + L+            SLR  S    D+TKKADPKA+ALK AKAVKS Q  ++K                                  
Subjt:  AVRLGLGFTWDAISLI---------HSNSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRK----------------------------------

Query:  -----------------RRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR
                         ++   + +LVFIVDIRADKKKIKDA+KKM+DI+TKKV TLIR
Subjt:  -----------------RRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR

SwissProt top hitse value%identityAlignment
O22644 60S ribosomal protein L23A5.8e-0738.21Show/hide
Query:  ADSTKKADPKAEALKTAKAVKS-VQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADK
        A   KK D KA+ALK AKAVKS V  L++K ++                                                     + +LVFIVDIRADK
Subjt:  ADSTKKADPKAEALKTAKAVKS-VQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADK

Query:  KKIKDAMKKMHDIETKKVTTLIR
        KKIK A+KKM+DI+TKKV TLIR
Subjt:  KKIKDAMKKMHDIETKKVTTLIR

Q07761 60S ribosomal protein L23a7.3e-1038.52Show/hide
Query:  ADSTKKADPKAEALKTAKAVKSVQHLRRK---------------------------------------------------RRESGHQSLVFIVDIRADKK
        AD +KK+DPKA+A K AKAVKS   L++K                                                   ++   + +LVFIVDI+ADKK
Subjt:  ADSTKKADPKAEALKTAKAVKSVQHLRRK---------------------------------------------------RRESGHQSLVFIVDIRADKK

Query:  KIKDAMKKMHDIETKKVTTLIR
        KIKDA+KKM+DI+TKKV TLIR
Subjt:  KIKDAMKKMHDIETKKVTTLIR

Q8LD46 60S ribosomal protein L23a-12.3e-1141.32Show/hide
Query:  DSTKKADPKAEALKTAKAVKSVQHLRRK---------------------------------------------------RRESGHQSLVFIVDIRADKKK
        D+TKKADPKA+ALK AKAVKS Q  ++K                                                   ++   + +LVFIVDIRADKKK
Subjt:  DSTKKADPKAEALKTAKAVKSVQHLRRK---------------------------------------------------RRESGHQSLVFIVDIRADKKK

Query:  IKDAMKKMHDIETKKVTTLIR
        IKDA+KKM+DI+TKKV TLIR
Subjt:  IKDAMKKMHDIETKKVTTLIR

Q9AT35 60S ribosomal protein L23a1.1e-0839.67Show/hide
Query:  DSTKKADPKAEALKTAKAVKS-------VQHLRRK--------------------------------------------RRESGHQSLVFIVDIRADKKK
        D TKK+D KA+ALKTAKAVKS       V+ +R                                              ++   + +LVFIVDIRA+KKK
Subjt:  DSTKKADPKAEALKTAKAVKS-------VQHLRRK--------------------------------------------RRESGHQSLVFIVDIRADKKK

Query:  IKDAMKKMHDIETKKVTTLIR
        IKDA+KKM+DI+TKKV TLIR
Subjt:  IKDAMKKMHDIETKKVTTLIR

Q9M3C3 60S ribosomal protein L23a-21.9e-1040.5Show/hide
Query:  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKKK
        D TKKADPKA+ALK AKAVKS Q +++  ++                                                     + +LVFIVDIRADKKK
Subjt:  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKKK

Query:  IKDAMKKMHDIETKKVTTLIR
        IKDA+KKM+DI+TKKV TLIR
Subjt:  IKDAMKKMHDIETKKVTTLIR

Arabidopsis top hitse value%identityAlignment
AT2G39460.1 ribosomal protein L23AA1.6e-1241.32Show/hide
Query:  DSTKKADPKAEALKTAKAVKSVQHLRRK---------------------------------------------------RRESGHQSLVFIVDIRADKKK
        D+TKKADPKA+ALK AKAVKS Q  ++K                                                   ++   + +LVFIVDIRADKKK
Subjt:  DSTKKADPKAEALKTAKAVKSVQHLRRK---------------------------------------------------RRESGHQSLVFIVDIRADKKK

Query:  IKDAMKKMHDIETKKVTTLIR
        IKDA+KKM+DI+TKKV TLIR
Subjt:  IKDAMKKMHDIETKKVTTLIR

AT2G39460.2 ribosomal protein L23AA1.6e-1241.32Show/hide
Query:  DSTKKADPKAEALKTAKAVKSVQHLRRK---------------------------------------------------RRESGHQSLVFIVDIRADKKK
        D+TKKADPKA+ALK AKAVKS Q  ++K                                                   ++   + +LVFIVDIRADKKK
Subjt:  DSTKKADPKAEALKTAKAVKSVQHLRRK---------------------------------------------------RRESGHQSLVFIVDIRADKKK

Query:  IKDAMKKMHDIETKKVTTLIR
        IKDA+KKM+DI+TKKV TLIR
Subjt:  IKDAMKKMHDIETKKVTTLIR

AT3G55280.1 ribosomal protein L23AB1.4e-1140.5Show/hide
Query:  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKKK
        D TKKADPKA+ALK AKAVKS Q +++  ++                                                     + +LVFIVDIRADKKK
Subjt:  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKKK

Query:  IKDAMKKMHDIETKKVTTLIR
        IKDA+KKM+DI+TKKV TLIR
Subjt:  IKDAMKKMHDIETKKVTTLIR

AT3G55280.2 ribosomal protein L23AB1.4e-1140.5Show/hide
Query:  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKKK
        D TKKADPKA+ALK AKAVKS Q +++  ++                                                     + +LVFIVDIRADKKK
Subjt:  DSTKKADPKAEALKTAKAVKSVQHLRRKRRE---------------------------------------------------SGHQSLVFIVDIRADKKK

Query:  IKDAMKKMHDIETKKVTTLIR
        IKDA+KKM+DI+TKKV TLIR
Subjt:  IKDAMKKMHDIETKKVTTLIR

AT3G55280.3 ribosomal protein L23AB6.2e-1244.35Show/hide
Query:  DSTKKADPKAEALKTAKAVKSVQ-HLRRK--------------------------------------------RRESGHQSLVFIVDIRADKKKIKDAMK
        D TKKADPKA+ALK AKAVKS Q  +R K                                            ++   + +LVFIVDIRADKKKIKDA+K
Subjt:  DSTKKADPKAEALKTAKAVKSVQ-HLRRK--------------------------------------------RRESGHQSLVFIVDIRADKKKIKDAMK

Query:  KMHDIETKKVTTLIR
        KM+DI+TKKV TLIR
Subjt:  KMHDIETKKVTTLIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACACTAGCTTTCCCGATAGCAGCTGTTCGTCTGGGGTTAGGGTTTACTTGGGATGCCATTAGTCTGATTCATTCGAATAGTCTGAGATTTCACTCGTTTTTCAC
TGCTGACAGCACCAAAAAGGCTGACCCTAAGGCTGAAGCCTTGAAAACTGCAAAGGCAGTAAAATCGGTCCAACATTTAAGAAGAAAGCGAAGAGAATCAGGACATCAGT
CATTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAAAAAATCAAGGACGCCATGAAAAAGATGCACGACATCGAGACCAAGAAAGTGACCACGTTGATCAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAACACTAGCTTTCCCGATAGCAGCTGTTCGTCTGGGGTTAGGGTTTACTTGGGATGCCATTAGTCTGATTCATTCGAATAGTCTGAGATTTCACTCGTTTTTCAC
TGCTGACAGCACCAAAAAGGCTGACCCTAAGGCTGAAGCCTTGAAAACTGCAAAGGCAGTAAAATCGGTCCAACATTTAAGAAGAAAGCGAAGAGAATCAGGACATCAGT
CATTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAAAAAATCAAGGACGCCATGAAAAAGATGCACGACATCGAGACCAAGAAAGTGACCACGTTGATCAGGTAA
Protein sequenceShow/hide protein sequence
MVTLAFPIAAVRLGLGFTWDAISLIHSNSLRFHSFFTADSTKKADPKAEALKTAKAVKSVQHLRRKRRESGHQSLVFIVDIRADKKKIKDAMKKMHDIETKKVTTLIR