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Lag0007737 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007737
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr9:4017362..4017679
RNA-Seq ExpressionLag0007737
SyntenyLag0007737
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026116.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-1856.1Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI  S  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

KAA0047233.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1856.1Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI  S  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

TYJ99726.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1856.1Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI  S  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

TYK10662.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1856.1Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI  S  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

TYK26918.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1854.88Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A L++CL +LV +GGWR DNETFRPG+ NQ+ +MM  ++PGCNI  +  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

TrEMBL top hitse value%identityAlignment
A0A5A7TUJ7 Retrotransposon protein6.7e-1956.1Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI  S  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

A0A5D3BKP9 Retrotransposon protein6.7e-1956.1Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI  S  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

A0A5D3CHB8 Retrotransposon protein6.7e-1956.1Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A LV+CL +LV  GGWR DN TFRPG+ NQ+ +MM  ++PGCNI  S  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

A0A5D3CQS4 Retrotransposon protein8.7e-1958.54Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A LV+CL +LV  GGWR +N TFRPG+  Q+ +MM E+LP  NI  SP I+ RVK LKK Y  IAEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

A0A5D3DTP5 Retrotransposon protein6.7e-1954.88Show/hide
Query:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM
        S SR  KH WT EE+A L++CL +LV +GGWR DNETFRPG+ NQ+ +MM  ++PGCNI  +  I+SR+KL+K+ +  +AEM
Subjt:  SGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATGGCTACACCGGGATCAGGATCTAGAAAGGAGAAACATGTATGGACGCCCGAGGAGGATGCCGTTCTCGTGCAGTGCCTATTTGACCTCGTCCAAATGGGAGG
ATGGCGGGGAGATAATGAGACATTTCGCCCGGGATTCCAGAACCAGATTGGGAAGATGATGAAAGAACGATTGCCCGGCTGCAACATTGTTGTCAGTCCAAATATCGAGT
CTAGGGTGAAGCTACTGAAAAAACAGTACATGGAAATCGCCGAGATGATGGACCTGCTTGTAGTGGGTTCGGTTGGAACGAGGAGAAGAAGTGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGATGGCTACACCGGGATCAGGATCTAGAAAGGAGAAACATGTATGGACGCCCGAGGAGGATGCCGTTCTCGTGCAGTGCCTATTTGACCTCGTCCAAATGGGAGG
ATGGCGGGGAGATAATGAGACATTTCGCCCGGGATTCCAGAACCAGATTGGGAAGATGATGAAAGAACGATTGCCCGGCTGCAACATTGTTGTCAGTCCAAATATCGAGT
CTAGGGTGAAGCTACTGAAAAAACAGTACATGGAAATCGCCGAGATGATGGACCTGCTTGTAGTGGGTTCGGTTGGAACGAGGAGAAGAAGTGTATAG
Protein sequenceShow/hide protein sequence
MQMATPGSGSRKEKHVWTPEEDAVLVQCLFDLVQMGGWRGDNETFRPGFQNQIGKMMKERLPGCNIVVSPNIESRVKLLKKQYMEIAEMMDLLVVGSVGTRRRSV