; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0007749 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007749
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr9:4269270..4269836
RNA-Seq ExpressionLag0007749
SyntenyLag0007749
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR40694.1 hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]7.2e-1834.87Show/hide
Query:  WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSEVGGL
        W SP   W+KVNVDA+    E  AGI +++ ++ G V+  +I  +  +   ++ E  AV  G  +  ++G  P I+E+DS  VV L N+ I    EVG L
Subjt:  WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSEVGGL

Query:  ISNFRNQTSLPPSPCQ--FVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKI
        IS+ +   S   S  Q  F  ++ N  AH L++LA    ++ +WLE+ P +I
Subjt:  ISNFRNQTSLPPSPCQ--FVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKI

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]2.0e-2036.05Show/hide
Query:  PLAQPSKGSRPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLF
        PL    +G R S W  PL P+FKVNVDA+F+     AG+ I+IRD+   VLL+ + ++   +    AE  A  EG  +A E G  P  +ETDS +V  L 
Subjt:  PLAQPSKGSRPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLF

Query:  NDPIDDLSEVGGLISNFRNQTSL--PPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISE
            +D SE+G L S+ R+  S         FV++ GN  AH LA++        +W+E+W + + +VI ++
Subjt:  NDPIDDLSEVGGLISNFRNQTSL--PPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISE

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]5.1e-2439.88Show/hide
Query:  WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSEVGGL
        W  P    +K+N DASF  ++  AG+ IIIR++ G+V+ +  KYL    S D AE    +EG  +A ++G  P+I+ETDS R+  LF+ P +DLSE G +
Subjt:  WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSEVGGL

Query:  ISNFRN-QTSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISECLYPL
        +   +N  T    +   FV + GN AAH LA+ A   R   IW+EDWP ++   +  ECL  L
Subjt:  ISNFRN-QTSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISECLYPL

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.0e-2343.11Show/hide
Query:  RPSR---WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDD
        RP R   W  P  P  KVNVDA+FR    VAG+ +IIRD+ G V LT I+ L   +  D+ EG AV EG  +A E GF    +ETDSLR+  L      D
Subjt:  RPSR---WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDD

Query:  LSEVGGLISNFRNQTSLPPS--PCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISEC
         SEVG L S  +   S         F  +NGN  AH LAQLA       IW+E+WP +I  V+  +C
Subjt:  LSEVGGLISNFRNQTSLPPS--PCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISEC

XP_024041966.1 uncharacterized protein LOC112099096 [Citrus clementina]1.4e-1634.78Show/hide
Query:  RPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSE
        R  +WS P + W KVNVDA+      +AG+ +++RD+ G      IK L L  S   AE  A+  G  +A++      I E+DSL V+ L N     L+E
Subjt:  RPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSE

Query:  VGGLISNFR-NQTSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIIS
        +G LIS+ + N  +      Q   ++ N AAH LA+LA  ++   IWL++ P +I+ + +S
Subjt:  VGGLISNFR-NQTSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIIS

TrEMBL top hitse value%identityAlignment
A0A2P6SAP1 Putative RNA-directed DNA polymerase1.5e-1632.16Show/hide
Query:  PLAQPSKGSRPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLF
        P  Q   G   ++W +P     K+N+D S+RP  G  GI ++IRD+ G  +    +Y     SA + E +A   G  +A    +   I+E+D   +V   
Subjt:  PLAQPSKGSRPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLF

Query:  NDPIDDLSEVGGLISNFRNQ-TSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISE
        N  ++D SEVG +I + ++  TSL       V +  N  A+RLA LA  + L+ +WLE+ P  I DV+  +
Subjt:  NDPIDDLSEVGGLISNFRNQ-TSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISE

A0A6J1C467 uncharacterized protein LOC1110077759.8e-2136.05Show/hide
Query:  PLAQPSKGSRPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLF
        PL    +G R S W  PL P+FKVNVDA+F+     AG+ I+IRD+   VLL+ + ++   +    AE  A  EG  +A E G  P  +ETDS +V  L 
Subjt:  PLAQPSKGSRPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLF

Query:  NDPIDDLSEVGGLISNFRNQTSL--PPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISE
            +D SE+G L S+ R+  S         FV++ GN  AH LA++        +W+E+W + + +VI ++
Subjt:  NDPIDDLSEVGGLISNFRNQTSL--PPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISE

A0A6J1CIF1 uncharacterized protein LOC1110112372.5e-2439.88Show/hide
Query:  WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSEVGGL
        W  P    +K+N DASF  ++  AG+ IIIR++ G+V+ +  KYL    S D AE    +EG  +A ++G  P+I+ETDS R+  LF+ P +DLSE G +
Subjt:  WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSEVGGL

Query:  ISNFRN-QTSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISECLYPL
        +   +N  T    +   FV + GN AAH LA+ A   R   IW+EDWP ++   +  ECL  L
Subjt:  ISNFRN-QTSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISECLYPL

A0A6J1DBJ7 uncharacterized protein LOC1110189739.5e-2443.11Show/hide
Query:  RPSR---WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDD
        RP R   W  P  P  KVNVDA+FR    VAG+ +IIRD+ G V LT I+ L   +  D+ EG AV EG  +A E GF    +ETDSLR+  L      D
Subjt:  RPSR---WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDD

Query:  LSEVGGLISNFRNQTSLPPS--PCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISEC
         SEVG L S  +   S         F  +NGN  AH LAQLA       IW+E+WP +I  V+  +C
Subjt:  LSEVGGLISNFRNQTSLPPS--PCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISEC

V4UMR3 RNase H domain-containing protein (Fragment)3.5e-1834.87Show/hide
Query:  WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSEVGGL
        W SP   W+KVNVDA+    E  AGI +++ ++ G V+  +I  +  +   ++ E  AV  G  +  ++G  P I+E+DS  VV L N+ I    EVG L
Subjt:  WSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDDLSEVGGL

Query:  ISNFRNQTSLPPSPCQ--FVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKI
        IS+ +   S   S  Q  F  ++ N  AH L++LA    ++ +WLE+ P +I
Subjt:  ISNFRNQTSLPPSPCQ--FVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-0526.43Show/hide
Query:  RWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDD------
        +W +P   W K N DA+++      GI  I+R+  G VL    + L  T +   AE +A+           +  II E+D+  +V L N   DD      
Subjt:  RWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDPIDD------

Query:  --LSEVGGLISNFRNQTSLPPSPCQFVSQNGNVAAHRLAQ
          L ++  L+ +F           +F  + GN  A R+A+
Subjt:  --LSEVGGLISNFRNQTSLPPSPCQFVSQNGNVAAHRLAQ

AT4G29090.1 Ribonuclease H-like superfamily protein8.2e-0424.64Show/hide
Query:  RWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLF-NDPI-----DD
        RW  P   W K N DA++  +    GI  ++R+  G V     + L    S   AE +A+           +  +I E+DS  ++ +  ND I       
Subjt:  RWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLF-NDPI-----DD

Query:  LSEVGGLISNFRNQTSLPPSPCQFVSQNGNVAAHRLAQ
        + ++  L+S F     +      F+ + GN  A R+A+
Subjt:  LSEVGGLISNFRNQTSLPPSPCQFVSQNGNVAAHRLAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCAGGGTCGATCGTCCTTTGGCTCAACCATCGAAGGGTAGTCGTCCATCTCGGTGGTCGTCGCCTCTGGACCCTTGGTTCAAAGTTAATGTCGATGCTAGTTT
TCGCCCGAATGAGGGAGTGGCGGGTATCAGCATTATCATTCGCGACAACTGTGGCAGAGTTCTTCTTACGACCATCAAGTATTTGGGTCTCACGGCATCTGCAGACTATG
CGGAAGGGAAGGCGGTTCTTGAAGGTTTTAGCATGGCGCAAGAGTTGGGTTTCTGGCCGATTATTGTGGAAACGGACTCTTTGCGTGTCGTTGGGCTTTTTAATGATCCG
ATTGACGACCTTTCAGAGGTGGGTGGTCTCATTTCGAATTTTCGTAACCAAACCTCCCTTCCTCCAAGTCCTTGTCAGTTTGTCTCTCAGAATGGGAATGTCGCAGCCCA
CCGTCTGGCGCAATTGGCTTCTCATCAGCGTTTAGACTGCATCTGGTTGGAAGATTGGCCTGCTAAAATTTTGGATGTCATTATTTCCGAATGTTTATACCCTTTATCTG
TTTCTGTTGTTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCAGGGTCGATCGTCCTTTGGCTCAACCATCGAAGGGTAGTCGTCCATCTCGGTGGTCGTCGCCTCTGGACCCTTGGTTCAAAGTTAATGTCGATGCTAGTTT
TCGCCCGAATGAGGGAGTGGCGGGTATCAGCATTATCATTCGCGACAACTGTGGCAGAGTTCTTCTTACGACCATCAAGTATTTGGGTCTCACGGCATCTGCAGACTATG
CGGAAGGGAAGGCGGTTCTTGAAGGTTTTAGCATGGCGCAAGAGTTGGGTTTCTGGCCGATTATTGTGGAAACGGACTCTTTGCGTGTCGTTGGGCTTTTTAATGATCCG
ATTGACGACCTTTCAGAGGTGGGTGGTCTCATTTCGAATTTTCGTAACCAAACCTCCCTTCCTCCAAGTCCTTGTCAGTTTGTCTCTCAGAATGGGAATGTCGCAGCCCA
CCGTCTGGCGCAATTGGCTTCTCATCAGCGTTTAGACTGCATCTGGTTGGAAGATTGGCCTGCTAAAATTTTGGATGTCATTATTTCCGAATGTTTATACCCTTTATCTG
TTTCTGTTGTTCTGTAA
Protein sequenceShow/hide protein sequence
MASRVDRPLAQPSKGSRPSRWSSPLDPWFKVNVDASFRPNEGVAGISIIIRDNCGRVLLTTIKYLGLTASADYAEGKAVLEGFSMAQELGFWPIIVETDSLRVVGLFNDP
IDDLSEVGGLISNFRNQTSLPPSPCQFVSQNGNVAAHRLAQLASHQRLDCIWLEDWPAKILDVIISECLYPLSVSVVL