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Lag0007772 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0007772
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr9:4512981..4513883
RNA-Seq ExpressionLag0007772
SyntenyLag0007772
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015382877.1 uncharacterized protein LOC107175700 [Citrus sinensis]1.8e-1726.12Show/hide
Query:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWR-WVVEYLIH
        C  C  + E  FHA++ C  AK  W+L+ F         +  + +L   ++       E    +CW +W  RN++VF  ++ +  + V     +VE  + 
Subjt:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWR-WVVEYLIH

Query:  FRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDS
         +    +  +G     +    NPP    YK+N DAAI V  + + LG +I+N  G+V+   ++   +  DV  +EA A+   +  A++A  F + +E+DS
Subjt:  FRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDS

Query:  ARVA-----------------AMIRANQEN------------CSEVAHAAARQVLKHGRQGVWLEDVP
          V                  A I+AN EN            C+ +AH+ A+  L    Q  WLE+ P
Subjt:  ARVA-----------------AMIRANQEN------------CSEVAHAAARQVLKHGRQGVWLEDVP

XP_015385738.1 uncharacterized protein LOC107177034 [Citrus sinensis]1.1e-1626.09Show/hide
Query:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVG-WRWVVEYLIH
        C ICK  +ETT H +L C  AK  WR +PF         +  ++++   +  +  +  E    +CW +W  RNK +F  +  E    +     VVE    
Subjt:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVG-WRWVVEYLIH

Query:  FRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDS
         +       A   S+ + +   PP    +K+N DAA+    + + LG +I++   +V +  ++S  F  DV   EA A+   L+VAK A F  + VE+D 
Subjt:  FRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDS

Query:  ARVAAMIRANQ-----------------------------ENCSEVAHAAARQVLKHGRQGVWLEDVPASLAWVYS
          V  +I  N+                              +C+  AH+ A+  L++    VWLE +P  +  V S
Subjt:  ARVAAMIRANQ-----------------------------ENCSEVAHAAARQVLKHGRQGVWLEDVPASLAWVYS

XP_024046693.1 uncharacterized protein LOC112101029 [Citrus clementina]6.7e-1726.12Show/hide
Query:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVF-SERDHEGGDVVGWRWVVEYLIH
        C IC  + E  FHA++ C  AK  W+L+ F         +  + +L   ++       E    +CW +W  RN++VF  + ++    V     +VE    
Subjt:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVF-SERDHEGGDVVGWRWVVEYLIH

Query:  FRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDS
         +    +   G     +    NPP    YK+N DAAI V  + + LG +I+N  G+V+   ++   +  DV  +EA A+   +  A++A  F + +E+DS
Subjt:  FRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDS

Query:  ARVAAM-----------------IRANQEN------------CSEVAHAAARQVLKHGRQGVWLEDVP
          V  +                 I+AN EN            C+ +AH+ A+  L    Q  WLE+ P
Subjt:  ARVAAM-----------------IRANQEN------------CSEVAHAAARQVLKHGRQGVWLEDVP

XP_024190234.1 uncharacterized protein LOC112194221 [Rosa chinensis]6.5e-2033.65Show/hide
Query:  SSICPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYL
        SS+C  C  +EETT H +  C W+K  W+ S  N         S +DL        +    E F+V+CW +WK RN+        E   +V W    E+L
Subjt:  SSICPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYL

Query:  IHFRAFQ--GKMVAGGGSQKET-IRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLE
         +F+  Q   + V    +QK   ++  PP+ P  KLNTDAAI  K K + LG ++++ +G++     + +     +VA+EA+A+   LL+ +EAGF  L 
Subjt:  IHFRAFQ--GKMVAGGGSQKET-IRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLE

Query:  VETDSARV
        VE+DS  V
Subjt:  VETDSARV

XP_024957833.1 uncharacterized protein LOC112499264 [Citrus sinensis]4.2e-1930.32Show/hide
Query:  ICPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFED---FAVMCWWV-WKRRNKVVFSER--DHEGGDVVGWRWV
        ICP CK++ E+T HA + C  AK  W+L+PF          S  DLL      +A  R ++     V  WWV W  RN+ VF  +  D E         V
Subjt:  ICPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFED---FAVMCWWV-WKRRNKVVFSER--DHEGGDVVGWRWV

Query:  VEYLIHFRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRL
        VE     +  + KM AG    + +    PP    +K+N +AAI   T+   LG +I+++ GRV+ T ++ I+F  DV  +EA AI   + VAK+AG+  L
Subjt:  VEYLIHFRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRL

Query:  EVETDSARVAAMIRANQ-----------------------------ENCSEVAHAAARQVLKHGRQGVWLEDVPASL
         VE+DS  V  ++   +                               C+ +AHA A+  L      VW E  P  +
Subjt:  EVETDSARVAAMIRANQ-----------------------------ENCSEVAHAAARQVLKHGRQGVWLEDVPASL

TrEMBL top hitse value%identityAlignment
A0A2N9EHR8 F-box domain-containing protein1.6e-1629.47Show/hide
Query:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHF
        C ICK+  ETT HA+  C   +  WR   +          + +DL  +   N     FE FA++CW +W  RNK   S+       +V      E L  F
Subjt:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHF

Query:  R-AFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDS
          A Q +M      +   I  NPP L   K+N D A+  +T+ + +G II+N  G  M  + + I +   V A+EA A   +  +A + G   +E+E DS
Subjt:  R-AFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDS

Query:  ARVAAMI
        + + + +
Subjt:  ARVAAMI

A0A2N9EYC3 Reverse transcriptase domain-containing protein4.3e-1727.4Show/hide
Query:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHF
        C  C  + E+T HA+  C      W   P+    +  +    +DL++  ++ ++   F+ FAV+CW +W RRN++   +       ++  R   E L+ F
Subjt:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHF

Query:  RAFQ--GKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETD
           Q  GK  +   +    I+  PP    YK+N D A+      + +G II+N +G VM  + + I +   V A+EA A   ++  AK++GF  +++E D
Subjt:  RAFQ--GKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETD

Query:  SARVAAMI
        S  +   I
Subjt:  SARVAAMI

A0A2N9G0G1 Uncharacterized protein5.6e-1727.27Show/hide
Query:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHF
        C  C  + E+T HA+  C      W   P+    +  +    +DL++  ++ ++    + FAV+CW +W RRN++   +       +V  R   E L+ F
Subjt:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHF

Query:  RAFQ--GKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETD
         A Q  GK  +   +    I+  PP +  +K+N D A+      + +G II+N +G VM  + + I +   V A+EA A   ++  AK++GF  +++E D
Subjt:  RAFQ--GKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETD

Query:  SARVAAMIR
        S  +   I+
Subjt:  SARVAAMIR

A0A2N9H1N4 RNase H domain-containing protein1.8e-1526.96Show/hide
Query:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHF
        C IC  + E+T HA+  C   ++ W+   +    A  T    +DLL      ++ +  + F+++CW +W RRN++   +       +V  +   + +  F
Subjt:  CPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHF

Query:  RAFQGK--MVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETD
        +  Q +   +    S   T++ NPP+   YK+N D AI   +  + +G II+N +G VM ++ +   F   V A+EA A   ++  A++ GF ++++E D
Subjt:  RAFQGK--MVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETD

Query:  SARV
        S  V
Subjt:  SARV

A0A6J1DAR4 uncharacterized protein LOC1110189544.7e-1625.63Show/hide
Query:  MDFSSICPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHE----GGDVVGW
        ++ ++ C  C    E + H    C +A+A W  S F         R   +     S++ AD  FE+  V+ W +W +RN   F++        G ++V  
Subjt:  MDFSSICPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHE----GGDVVGW

Query:  RWVVEYLIHFRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGF
         W  +Y + FR  +   + G  +    I   PP    YK+NTDA+     + + LG II N++G+VM    + ++ +Q V   EA+A  + L +A E G 
Subjt:  RWVVEYLIHFRAFQGKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGF

Query:  F-RLEVETDSARVA------------AMIRANQENCSEVAHAAARQVLKHGRQGVWLEDVPASLAWVYSREVLDRNL
           LE  +++  +             A     +   ++ AH  AR+ L      +W+ED P  L      E L+  L
Subjt:  F-RLEVETDSARVA------------AMIRANQENCSEVAHAAARQVLKHGRQGVWLEDVPASLAWVYSREVLDRNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTTCATCTATATGCCCTATATGCAAAGTGAAGGAGGAAACCACCTTTCATGCTATTTTGGGTTGTTGGTGGGCGAAAGCGCAGTGGCGTCTATCACCTTTCAA
TCCATTTCCTGCTCCCCAAACATGTAGAAGTGGTGTAGACCTATTATGGTGGAGTAGCATAAATATGGCTGATACCCGCTTTGAGGATTTTGCGGTAATGTGCTGGTGGG
TGTGGAAGAGGAGGAACAAGGTGGTGTTTAGTGAAAGGGATCATGAAGGGGGCGATGTGGTTGGGTGGAGATGGGTTGTAGAGTACTTGATCCATTTTAGGGCTTTCCAA
GGGAAAATGGTGGCTGGGGGAGGGAGTCAGAAGGAGACAATTCGACGGAATCCTCCTAGTCTTCCTAACTACAAACTTAACACAGATGCAGCAATATGTGTCAAGACGAA
AACCAGCAGTTTAGGGGCCATTATTCAAAATGAAAAAGGAAGAGTGATGCTTACCGTGATGAGAAGTATCCAATTTGTCCAGGATGTGGTTGCATTGGAGGCAATGGCAA
TCTGTGATAGCCTATTAGTGGCAAAGGAAGCTGGCTTTTTTAGACTGGAGGTGGAGACTGATTCAGCTCGTGTGGCGGCTATGATTCGCGCAAATCAGGAAAACTGTTCA
GAGGTGGCGCATGCGGCGGCCCGCCAAGTACTAAAGCACGGCCGACAAGGGGTCTGGCTAGAGGATGTGCCGGCGTCGTTAGCATGGGTATATAGTAGAGAGGTTTTAGA
CAGGAATCTTGATGTAATGAGTTCTGGGTCCGATTTCTTCGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTTCATCTATATGCCCTATATGCAAAGTGAAGGAGGAAACCACCTTTCATGCTATTTTGGGTTGTTGGTGGGCGAAAGCGCAGTGGCGTCTATCACCTTTCAA
TCCATTTCCTGCTCCCCAAACATGTAGAAGTGGTGTAGACCTATTATGGTGGAGTAGCATAAATATGGCTGATACCCGCTTTGAGGATTTTGCGGTAATGTGCTGGTGGG
TGTGGAAGAGGAGGAACAAGGTGGTGTTTAGTGAAAGGGATCATGAAGGGGGCGATGTGGTTGGGTGGAGATGGGTTGTAGAGTACTTGATCCATTTTAGGGCTTTCCAA
GGGAAAATGGTGGCTGGGGGAGGGAGTCAGAAGGAGACAATTCGACGGAATCCTCCTAGTCTTCCTAACTACAAACTTAACACAGATGCAGCAATATGTGTCAAGACGAA
AACCAGCAGTTTAGGGGCCATTATTCAAAATGAAAAAGGAAGAGTGATGCTTACCGTGATGAGAAGTATCCAATTTGTCCAGGATGTGGTTGCATTGGAGGCAATGGCAA
TCTGTGATAGCCTATTAGTGGCAAAGGAAGCTGGCTTTTTTAGACTGGAGGTGGAGACTGATTCAGCTCGTGTGGCGGCTATGATTCGCGCAAATCAGGAAAACTGTTCA
GAGGTGGCGCATGCGGCGGCCCGCCAAGTACTAAAGCACGGCCGACAAGGGGTCTGGCTAGAGGATGTGCCGGCGTCGTTAGCATGGGTATATAGTAGAGAGGTTTTAGA
CAGGAATCTTGATGTAATGAGTTCTGGGTCCGATTTCTTCGGTTAG
Protein sequenceShow/hide protein sequence
MDFSSICPICKVKEETTFHAILGCWWAKAQWRLSPFNPFPAPQTCRSGVDLLWWSSINMADTRFEDFAVMCWWVWKRRNKVVFSERDHEGGDVVGWRWVVEYLIHFRAFQ
GKMVAGGGSQKETIRRNPPSLPNYKLNTDAAICVKTKTSSLGAIIQNEKGRVMLTVMRSIQFVQDVVALEAMAICDSLLVAKEAGFFRLEVETDSARVAAMIRANQENCS
EVAHAAARQVLKHGRQGVWLEDVPASLAWVYSREVLDRNLDVMSSGSDFFG