CuGenDBv2

Gene ID	Lag0007781
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	J domain-containing protein
Genome location	chr9:4594261..4598625
RNA-Seq Expression	Lag0007781
Synteny	Lag0007781
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605274.1 hypothetical protein SDJN03_02591, partial [Cucurbita argyrosperma subsp. sororia]

5.6e-23

85.29

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Query:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
        S L   HVA FHSTP SCDKWKSKWKFD G +GKEPSKNYVRYVTRQRRAD KKALKDLLYNSGSTFQ
Subjt:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ

KAG7035233.1 hypothetical protein SDJN02_02028 [Cucurbita argyrosperma subsp. argyrosperma]

5.6e-23

85.29

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Query:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
        S L   HVA FHSTP SCDKWKSKWKFD G +GKEPSKNYVRYVTRQRRAD KKALKDLLYNSGSTFQ
Subjt:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ

XP_022158416.1 uncharacterized protein LOC111024907 [Momordica charantia]

4.3e-23

86.89

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Query:  HVAFFHSTPVSCDKWKSKWKFDGGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
        HVAFFHSTP SCDKWK+ W+FDG  GKEPSKNYVRYVTRQRRAD KKALKDLLYN+GSTFQ
Subjt:  HVAFFHSTPVSCDKWKSKWKFDGGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ

XP_023007277.1 uncharacterized protein LOC111499819 [Cucurbita maxima]

2.5e-23

86.76

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Query:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
        S L   HVA FHSTP SCDKWKSKWKFD G  GKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
Subjt:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ

XP_038902947.1 uncharacterized protein LOC120089520 [Benincasa hispida]

1.5e-23

91.8

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Query:  HVAFFHSTPVSCDKWKSKWKFDGGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
        HVA FHST  SCDKWKSKWKFDGGNGKE SKNYVRYVTRQRRAD KKALKDLLYNSGSTFQ
Subjt:  HVAFFHSTPVSCDKWKSKWKFDGGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMX8 J domain-containing protein

2.6e-21

85.25

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Query:  HVAFFHSTPVSCDKWKSKWKFD-GGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTF
        HVA FHSTP SCDKW+SKWKFD GG+GKEPSK+YVRYVTRQ+RAD KKALK+LLYNSGSTF
Subjt:  HVAFFHSTPVSCDKWKSKWKFD-GGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTF

A0A1S3CDI7 uncharacterized protein LOC103499655

1.3e-20

83.61

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Query:  HVAFFHSTPVSCDKWKSKWKFD-GGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTF
        HVA FHSTP SC+KWKSKWKFD GG+GKEP K+YVRYVTRQRR+D KKALK+LLYNSGSTF
Subjt:  HVAFFHSTPVSCDKWKSKWKFD-GGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTF

A0A6J1E0U6 uncharacterized protein LOC111024907

2.1e-23

86.89

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Query:  HVAFFHSTPVSCDKWKSKWKFDGGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
        HVAFFHSTP SCDKWK+ W+FDG  GKEPSKNYVRYVTRQRRAD KKALKDLLYN+GSTFQ
Subjt:  HVAFFHSTPVSCDKWKSKWKFDGGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ

A0A6J1G8G0 uncharacterized protein LOC111451811

1.4e-22

83.82

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Query:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
        S L   HVA FHSTP  CDKWKSKWKFD G +GKEPSKNYVRYVTRQRRAD KKALKDLLYNSGSTFQ
Subjt:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ

A0A6J1KY84 uncharacterized protein LOC111499819

1.2e-23

86.76

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Query:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
        S L   HVA FHSTP SCDKWKSKWKFD G  GKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ
Subjt:  SGLWTNHVAFFHSTPVSCDKWKSKWKFDGG-NGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

1.3e-14

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Query:  WAIWSDRNKCV-HGEEIPSSQIRSKWIRDYLESFRRLNDQSSSGRRIRSNDASLSSISFNRWSPPNRDFWKLNSDAACSNEVAMTSIKMICRDFEGKAMV
        W +W +RN+ V  G E  + ++  +   D LE +R   +  S G + + N +S       RW PP   + K N+DA  + +     I  + R+ +G+   
Subjt:  WAIWSDRNKCV-HGEEIPSSQIRSKWIRDYLESFRRLNDQSSSGRRIRSNDASLSSISFNRWSPPNRDFWKLNSDAACSNEVAMTSIKMICRDFEGKAMV

Query:  VASRSLDVRLEAHIAEL----WAILEGIRLAYSNLVVESDCQIAINFINKVSPTWSYSKALVVSIRSFLHLFRDISLIFAPRSCNRTAHEIVRYGKSINN
        + +R+L        AEL    WA+L   R  Y+ ++ ESD Q+ I  +N     W   K  +  ++  L  F ++  +F PR  N  A  + R   S  N
Subjt:  VASRSLDVRLEAHIAEL----WAILEGIRLAYSNLVVESDCQIAINFINKVSPTWSYSKALVVSIRSFLHLFRDISLIFAPRSCNRTAHEIVRYGKSINN

Sequences

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CDS sequence

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ATGGAAAACCTAGGCTTAATAGTTGTTTCGTGTTGGGCTATATGGAGCGATAGAAACAAGTGCGTTCATGGTGAAGAAATTCCATCCTCTCAAATTCGAAGCAAATGGAT
AAGAGATTACCTCGAATCCTTCCGGCGCCTCAACGACCAGTCCTCGTCTGGAAGGCGAATCAGAAGCAATGATGCCTCCCTTTCTTCGATCAGTTTCAATCGCTGGTCTC
CCCCAAATCGTGATTTTTGGAAACTAAACTCTGATGCTGCATGTTCGAATGAAGTGGCGATGACAAGTATCAAGATGATTTGTAGAGATTTCGAGGGTAAAGCGATGGTG
GTTGCGTCAAGATCTTTGGATGTGAGATTGGAGGCCCATATTGCGGAGTTATGGGCCATACTTGAGGGAATAAGGCTGGCCTACTCAAATTTGGTTGTGGAGTCAGATTG
TCAAATTGCCATAAATTTCATCAACAAGGTCTCTCCAACTTGGTCATATTCTAAGGCATTAGTTGTGTCCATCCGGAGCTTTTTGCATCTGTTTAGGGATATCTCTTTAA
TTTTTGCTCCTAGATCTTGCAATAGGACTGCCCATGAGATTGTTAGATATGGGAAATCCATAAACAATAATGAAGTTTGGGTATTAAATTTCCCAAACGTGAGAAGAGGC
GGCGAGGCCCAAGCGGACAGCAAGCTTAGTAGAAATTTGGCCCACGTATGGTTGCTTCCATGTTTAGCAAACTCTGGCCTCTGGACAAACCATGTCGCTTTTTTCCACTC
TACCCCTGTCTCTTGCGATAAATGGAAGAGCAAATGGAAATTTGATGGTGGAAATGGAAAGGAGCCGTCAAAGAATTATGTTAGATACGTAACCCGTCAAAGGCGTGCTG
ATACAAAAAAGGCTCTAAAGGACCTCCTCTACAACAGTGGATCTACCTTTCAGGTGTGCCCTCTGATCATCTGA

mRNA sequence

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Protein sequence

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MENLGLIVVSCWAIWSDRNKCVHGEEIPSSQIRSKWIRDYLESFRRLNDQSSSGRRIRSNDASLSSISFNRWSPPNRDFWKLNSDAACSNEVAMTSIKMICRDFEGKAMV
VASRSLDVRLEAHIAELWAILEGIRLAYSNLVVESDCQIAINFINKVSPTWSYSKALVVSIRSFLHLFRDISLIFAPRSCNRTAHEIVRYGKSINNNEVWVLNFPNVRRG
GEAQADSKLSRNLAHVWLLPCLANSGLWTNHVAFFHSTPVSCDKWKSKWKFDGGNGKEPSKNYVRYVTRQRRADTKKALKDLLYNSGSTFQVCPLII

Lag0007781 (gene) of Sponge gourd (AG-4) v1 genome