CuGenDBv2

Gene ID	Lag0007842
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr9:6205959..6206996
RNA-Seq Expression	Lag0007842
Synteny	Lag0007842
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

1.0e-42

33.24

Show/hide

Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------
        MA  R+++ KF+G GDF LW+ KIRA+L Q K    L E   LP  ++E +K  ++++                                          
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------

Query:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK
                   MD +K L +NLD+F+K+ ++  N+GEK+ D+N+A +LLNSLPE Y+EVK  +KYG  S+T   ++ A++T+ LE++ ++K+  + L A+
Subjt:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK

Query:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTGECNNQSACMERFD--------
        G+S     K KE   +S+ KG  + KC  CHKEGH K++C              NK  EAS  E  +T  Y+ A  T G C++     E  +        
Subjt:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTGECNNQSACMERFD--------

Query:  ----WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
            W++DSGC+FHMT  + + + +++ DGG V +G+N TC V G GSV +   DG +++L NV
Subjt:  ----WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

2.6e-43

33.88

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Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------
        MA  R+++ KF+G GDF LW+ KIRA+L Q K    L E   LP  ++E +K  ++++                                          
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------

Query:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK
                   MD +K+L +NLD+F+K+ ++  N+GEK+ D+N+A +LLNSLPE Y+EVK  +KYG+ S+T   ++ A++T+ LE++ ++K+  + L A+
Subjt:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK

Query:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTG----ECNNQSA---CMERFD-
        G+S     K KE   +S+ KG  + KC  CHKEGH K++C              NK  EAS  E  +T  Y+ A  T G    E   +SA    +   D 
Subjt:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTG----ECNNQSA---CMERFD-

Query:  ---WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
           W++DSGC+FHMT  + + + +++ DGG V +G+N TC V G GSV +   DG +++L NV
Subjt:  ---WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.5e-41

33.04

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Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQIMDAT--------------------------------------
        M   +++IEKFDG GDF LW  +I A+L  QKA+ AL +   LP TL++ ++ET+ ++  +T                                      
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQIMDAT--------------------------------------

Query:  ---------------KTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK
                       K L +NLD+FKK+T      GEK+G +NEA +L+NS+ + YKEVKT LKYG+ +IT +++I+ +++KELEL+++ K ++    A+
Subjt:  ---------------KTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK

Query:  GKSKHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGECNNQSACMERFDWVIDSGCSFHMTSSK
        GK+  ++   +    G      N  H             ++    R +++ +    VG     Y++ LA T +        E  D V+DSGC++HMTS K
Subjt:  GKSKHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGECNNQSACMERFDWVIDSGCSFHMTSSK

Query:  GWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
         WF  YK  +G  VYMGNN  C++IG+GSV LKLS     LL+ V
Subjt:  GWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

4.5e-43

33.88

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Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------
        MA  R+++ KF+G GDF LW+ KIRA+L Q K    L E   LP  ++E +K  ++++                                          
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------

Query:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK
                   MD +K+L +NLD+F+K+ ++  N+GEK+ D+N+A +LLNSLPE Y+EVK  +KYG+ S+T   ++ A++T+ LE++ ++K+  + L A+
Subjt:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK

Query:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTG----ECNNQSA---CMERFD-
        G+S     K KE   +S+ KG  + KC  CHKEGH K++C              NK  EAS  E  +T  Y+ A  T G    E   +SA    +   D 
Subjt:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTG----ECNNQSA---CMERFD-

Query:  ---WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
           W++DSGC+FHMT  + + + +++ DGG V +G+N TC V G GSV +   DG +++L NV
Subjt:  ---WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.2e-45

32.8

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Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------
        M   +++IEKFDG GDF L   +I A L  QKA+ AL +   LP TL++ ++ET+ ++                                          
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------

Query:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKK--ETSKGLY
                   M+  K L +NLD+FKK+T       EK+G ++EA +L+N + + YKEVKT+LKYG+ +IT +++I+A+++KELEL+++ K    ++ L+
Subjt:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKK--ETSKGLY

Query:  AKGKSKHKE--NKNQSEDKGNGKVKCNYCHKEGHIKRDC--------------YSLKRKNQYHRNKKNKQPE-----------ASVGENTITYSDALATT
        +KG +  ++  NKNQ   +    +KC  CHKEGH KR+C              Y    +  ++RN+  ++ +             VG     Y+  LA T
Subjt:  AKGKSKHKE--NKNQSEDKGNGKVKCNYCHKEGHIKRDC--------------YSLKRKNQYHRNKKNKQPE-----------ASVGENTITYSDALATT

Query:  GECNNQSACMERFDWVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLR
         +       +E  DWV+DSGC+++MTS K WF  YK  +G  V MGNN  C++IG+GSV LK S+    LL+
Subjt:  GECNNQSACMERFDWVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

4.9e-43

33.24

Show/hide

Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------
        MA  R+++ KF+G GDF LW+ KIRA+L Q K    L E   LP  ++E +K  ++++                                          
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------

Query:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK
                   MD +K L +NLD+F+K+ ++  N+GEK+ D+N+A +LLNSLPE Y+EVK  +KYG  S+T   ++ A++T+ LE++ ++K+  + L A+
Subjt:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK

Query:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTGECNNQSACMERFD--------
        G+S     K KE   +S+ KG  + KC  CHKEGH K++C              NK  EAS  E  +T  Y+ A  T G C++     E  +        
Subjt:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTGECNNQSACMERFD--------

Query:  ----WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
            W++DSGC+FHMT  + + + +++ DGG V +G+N TC V G GSV +   DG +++L NV
Subjt:  ----WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.0e-42

33.04

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Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQIMDAT--------------------------------------
        M   +++IEKFDG GDF LW  +I A+L  QKA+ AL +   LP TL++ ++ET+ ++  +T                                      
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQIMDAT--------------------------------------

Query:  ---------------KTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK
                       K L +NLD+FKK+T      GEK+G +NEA +L+NS+ + YKEVKT LKYG+ +IT +++I+ +++KELEL+++ K ++    A+
Subjt:  ---------------KTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK

Query:  GKSKHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGECNNQSACMERFDWVIDSGCSFHMTSSK
        GK+  ++   +    G      N  H             ++    R +++ +    VG     Y++ LA T +        E  D V+DSGC++HMTS K
Subjt:  GKSKHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGECNNQSACMERFDWVIDSGCSFHMTSSK

Query:  GWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
         WF  YK  +G  VYMGNN  C++IG+GSV LKLS     LL+ V
Subjt:  GWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

A0A5A7UB25 Putative gag-pol polyprotein

1.3e-43

33.88

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Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------
        MA  R+++ KF+G GDF LW+ KIRA+L Q K    L E   LP  ++E +K  ++++                                          
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------

Query:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK
                   MD +K+L +NLD+F+K+ ++  N+GEK+ D+N+A +LLNSLPE Y+EVK  +KYG+ S+T   ++ A++T+ LE++ ++K+  + L A+
Subjt:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK

Query:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTG----ECNNQSA---CMERFD-
        G+S     K KE   +S+ KG  + KC  CHKEGH K++C              NK  EAS  E  +T  Y+ A  T G    E   +SA    +   D 
Subjt:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTG----ECNNQSA---CMERFD-

Query:  ---WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
           W++DSGC+FHMT  + + + +++ DGG V +G+N TC V G GSV +   DG +++L NV
Subjt:  ---WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

A0A5D3DNU1 Putative gag-pol polyprotein

2.2e-43

33.88

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Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------
        MA  R+++ KF+G GDF LW+ KIRA+L Q K    L E   LP  ++E +K  ++++                                          
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------

Query:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK
                   MD +K+L +NLD+F+K+ ++  N+GEK+ D+N+A +LLNSLPE Y+EVK  +KYG+ S+T   ++ A++T+ LE++ ++K+  + L A+
Subjt:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAK

Query:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTG----ECNNQSA---CMERFD-
        G+S     K KE   +S+ KG  + KC  CHKEGH K++C              NK  EAS  E  +T  Y+ A  T G    E   +SA    +   D 
Subjt:  GKS-----KHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTIT--YSDALATTG----ECNNQSA---CMERFD-

Query:  ---WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
           W++DSGC+FHMT  + + + +++ DGG V +G+N TC V G GSV +   DG +++L NV
Subjt:  ---WVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.0e-45

32.8

Show/hide

Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------
        M   +++IEKFDG GDF L   +I A L  QKA+ AL +   LP TL++ ++ET+ ++                                          
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQI------------------------------------------

Query:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKK--ETSKGLY
                   M+  K L +NLD+FKK+T       EK+G ++EA +L+N + + YKEVKT+LKYG+ +IT +++I+A+++KELEL+++ K    ++ L+
Subjt:  -----------MDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKK--ETSKGLY

Query:  AKGKSKHKE--NKNQSEDKGNGKVKCNYCHKEGHIKRDC--------------YSLKRKNQYHRNKKNKQPE-----------ASVGENTITYSDALATT
        +KG +  ++  NKNQ   +    +KC  CHKEGH KR+C              Y    +  ++RN+  ++ +             VG     Y+  LA T
Subjt:  AKGKSKHKE--NKNQSEDKGNGKVKCNYCHKEGHIKRDC--------------YSLKRKNQYHRNKKNKQPE-----------ASVGENTITYSDALATT

Query:  GECNNQSACMERFDWVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLR
         +       +E  DWV+DSGC+++MTS K WF  YK  +G  V MGNN  C++IG+GSV LK S+    LL+
Subjt:  GECNNQSACMERFDWVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.4e-07

26.64

Show/hide

Query:  KETINQIMDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLK-YGKVSITTDAIISAIRTKELELQSQKKETSK--------
        K  ++  + +  +L  +   F ++  E    G KI + ++   LL +LP  Y  + T ++   + ++T   + + +  +E+++++   +TSK        
Subjt:  KETINQIMDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLK-YGKVSITTDAIISAIRTKELELQSQKKETSK--------

Query:  ---GLYAKGKSKHKENKNQSEDKGNG--KVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGECNNQSACMERFDWVIDS
             Y     K++  K +   KGN   KVKC++C +EGHIK+DC+  KR      N KNK+ E  V   T T         E NN S  M+   +V+DS
Subjt:  ---GLYAKGKSKHKENKNQSEDKGNG--KVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGECNNQSACMERFDWVIDS

Query:  GCSFHMTSSKGWFS
        G S H+ + +  ++
Subjt:  GCSFHMTSSKGWFS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-20

25.42

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Query:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDD-----------------KETINQIMD---------------ATKTLS--
        M+  +Y++ KF+G   F  W+ ++R +L QQ     L   S  P T+  +D                  + +N I+D                +KTL+  
Subjt:  MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDD-----------------KETINQIMD---------------ATKTLS--

Query:  -------------------KNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKG----
                            +L+ F  +  +  NLG KI ++++A +LLNSLP +Y  + TT+ +GK +I    + SA+   E   + +KK  ++G    
Subjt:  -------------------KNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTLKYGKVSITTDAIISAIRTKELELQSQKKETSKG----

Query:  LYAKGKSKHKENKNQSEDKGNGKVK---------CNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGECNNQSACMERFDWV
           +G+S  + + N       GK K         C  C++ GH KRDC + ++       +KN    A++ +N       +    EC + S      +WV
Subjt:  LYAKGKSKHKENKNQSEDKGNGKVK---------CNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGECNNQSACMERFDWV

Query:  IDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV
        +D+  S H T  +  F  Y   D G V MGN    K+ GIG + +K + G   +L++V
Subjt:  IDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAGTGGCAAGGTACGATATCGAGAAGTTTGATGGGAAAGGAGATTTTGACCTATGGAAGGCCAAAATCAGAGCAGTTCTTCGACAACAAAAGGCAATTCATGCCCT
TACCGAATCATCAAACTTACCTACCACCTTATCTGAAGACGACAAAGAGACAATAAACCAGATAATGGATGCAACCAAGACATTATCCAAGAATCTTGATGACTTCAAGA
AGATGACCTTAGAGTTTAAGAACCTTGGAGAGAAAATAGGGGATGATAATGAAGCCTTTGTGCTTCTAAACTCGCTTCCAGAGGCCTATAAGGAAGTAAAGACAACATTG
AAATATGGCAAGGTCTCAATTACCACAGATGCCATAATTTCAGCCATCAGAACAAAGGAATTGGAACTACAATCACAGAAAAAGGAGACTTCCAAAGGTCTTTATGCCAA
GGGGAAATCCAAACATAAAGAAAATAAGAATCAGTCTGAAGACAAAGGGAATGGCAAAGTTAAGTGTAACTATTGCCACAAAGAAGGCCATATTAAAAGAGACTGCTACT
CTTTGAAAAGAAAGAACCAATACCATAGAAACAAGAAAAATAAACAGCCAGAAGCCTCGGTTGGAGAGAATACAATCACTTACTCGGATGCTCTTGCAACTACAGGAGAG
TGCAATAATCAATCAGCTTGTATGGAGAGGTTCGATTGGGTTATTGACTCAGGTTGTTCTTTTCACATGACCTCATCCAAAGGTTGGTTCAGCACCTACAAAGAATGGGA
TGGAGGAATGGTGTATATGGGGAACAACCATACTTGCAAGGTAATTGGTATTGGATCAGTTTCTTTGAAATTAAGTGATGGTTCAATCAAGCTTCTAAGGAATGTTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAVARYDIEKFDGKGDFDLWKAKIRAVLRQQKAIHALTESSNLPTTLSEDDKETINQIMDATKTLSKNLDDFKKMTLEFKNLGEKIGDDNEAFVLLNSLPEAYKEVKTTL
KYGKVSITTDAIISAIRTKELELQSQKKETSKGLYAKGKSKHKENKNQSEDKGNGKVKCNYCHKEGHIKRDCYSLKRKNQYHRNKKNKQPEASVGENTITYSDALATTGE
CNNQSACMERFDWVIDSGCSFHMTSSKGWFSTYKEWDGGMVYMGNNHTCKVIGIGSVSLKLSDGSIKLLRNV

Lag0007842 (gene) of Sponge gourd (AG-4) v1 genome